mRNA_H-canaliculatus_M_contigs8307.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8307.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8307.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8307.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8307contigH-canaliculatus_M_contigs8307:3702..4037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size337
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854146.3688934-CDS-H-canaliculatus_M_contigs8307:3701..40371696854146.3688934-CDS-H-canaliculatus_M_contigs8307:3701..4037Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8307 3702..4037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8307.2.1prot_H-canaliculatus_M_contigs8307.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8307 3702..4037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8307.2.1

>prot_H-canaliculatus_M_contigs8307.2.1 ID=prot_H-canaliculatus_M_contigs8307.2.1|Name=mRNA_H-canaliculatus_M_contigs8307.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
LPRLPGGKNAESLQRWSCRRVPRMAETFVPQQGRKLNLRVLLCSIRTRRA
VHTTVLRERSGWLPHWLHLYRLNGTRVVGIAISCKRGNVSCISTSESEAS
WCFRQNETIFP*
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mRNA from alignment at H-canaliculatus_M_contigs8307:3702..4037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8307.2.1 ID=mRNA_H-canaliculatus_M_contigs8307.2.1|Name=mRNA_H-canaliculatus_M_contigs8307.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8307:3702..4037+ (Hapterophycus canaliculatus Oshoro7m male)
CTGCCACGCCTTCCGGGAGGAAAAAACGCCGAATCGCTCCAACGCTGGTC
ATGCCGGAGGGTGCCAAGGATGGCGGAGACCTTCGTGCCTCAACAGGGAC
GCAAGCTGAACCTTCGAGTGCTGCTGTGTTCAATTCGCACGCGTCGGGCA
GTGCACACGACCGTGCTTCGAGAAAGAAGCGGTTGGCTCCCACACTGGTT
GCACCTCTATAGATTGAATGGAACTAGGGTAGTCGGGATTGCGATAAGTT
GTAAGCGCGGCAATGTATCGTGCATCAGCACGTCCGAGAGCGAGGCATCT
TGGTGTTTCCGTCAAAACGAAACAATTTTTCCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8307:3702..4037+

>mRNA_H-canaliculatus_M_contigs8307.2.1 ID=mRNA_H-canaliculatus_M_contigs8307.2.1|Name=mRNA_H-canaliculatus_M_contigs8307.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8307:3702..4037+ (Hapterophycus canaliculatus Oshoro7m male)
CTGCCACGCCTTCCGGGAGGAAAAAACGCCGAATCGCTCCAACGCTGGTC
ATGCCGGAGGGTGCCAAGGATGGCGGAGACCTTCGTGCCTCAACAGGGAC
GCAAGCTGAACCTTCGAGTGCTGCTGTGTTCAATTCGCACGCGTCGGGCA
GTGCACACGACCGTGCTTCGAGAAAGAAGCGGTTGGCTCCCACACTGGTT
GCACCTCTATAGATTGAATGGAACTAGGGTAGTCGGGATTGCGATAAGTT
GTAAGCGCGGCAATGTATCGTGCATCAGCACGTCCGAGAGCGAGGCATCT
TGGTGTTTCCGTCAAAACGAAACAATTTTTCCTTGA
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