mRNA_H-canaliculatus_M_contigs8046.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8046.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8046.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8046.1.1 vs.
Match: Cytochrome (b5 reductase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW3_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 4.440e-37
Identity = 112/230 (48.70%), Postives = 131/230 (56.96%), Query Frame = 1 
Query:  493 MGDWGQDDESGMEDAGVDMGTDMEMDALAEEEDWVEMDEA----TEDSR--QRXXXXXXXXXXXXXXXXRRYLSSSRPSLEVSLDTSVLPEPVGPLVVWGTPLAAVLGAVAVTARVSRLLGA----NNXXXXXXXTPLPSPSAVISD--------LRYGARLWGGSVSSWVSRRSQQWGRVFGPKEVVLPAEDWSVCSLLAKTREGGXXXXXXXXXXXXXXGVYRYRFGL 1128
            MG+W Q  E G  +         E +    EE+W E+ EA    TE  R  QR      XXXXXXXXXX    SSS P LEVSLD SV+PEPV P V+WGT  AA LG VAVTAR+ RLLGA    +         P+ +P+A ++         LRYGAR+W GS+ SW SRRSQQW   FGP+ VVLPA DWSVC+LL K REG               G+YRYRFGL
Sbjct:    1 MGEWRQRGEEGGAE---------ETEMNGAEEEWTEVREAATRETELRRRQQRLYREGEXXXXXXXXXXXVLASSSSPLLEVSLDRSVMPEPVVPPVMWGTTTAAFLGVVAVTARIPRLLGAVGKSSTVTVGNTLGPVATPAAGVAGKLASAFPGLRYGARVWAGSLGSWASRRSQQWAEAFGPEAVVLPANDWSVCTLLEKVREGDG-------------GLYRYRFGL 208
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BLAST of mRNA_H-canaliculatus_M_contigs8046.1.1 vs.
Match: Cytochrome (b5 reductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM13_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.060e-8
Identity = 45/136 (33.09%), Postives = 62/136 (45.59%), Query Frame = 1 
Query:  739 LPEPVGPLVVWGTPLAAVLGAVAVTARVSRLLGANNXXXXXXXTPLPSPSA------VISDLRYGARLWGGSVSSWVSRRSQQWGRVFGPKEVVLPAEDWSVCSLLAKTREGGXXXXXXXXXXXXXXGVYRYRFGL 1128
            +P PV P++V       V  AVA+ ARV  +LGA             + +A       + D RY  RL  GS  +W+      + R FGP++V+LPA DWSVC+L  + R G               G  +YRF L
Sbjct:    1 MPPPVPPVLVGAATTLLVCLAVALAARVPLVLGALGRAAAGAWGGAAALAARANVGGALGDARYALRLALGSAQAWMDEVHAAFNRAFGPEDVMLPANDWSVCTLQERMRVGN--------------GCVKYRFKL 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8046.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Cytochrome4.440e-3748.70b5 reductase domain-containing protein n=1 Tax=Ect... [more]
Cytochrome9.060e-833.09b5 reductase domain-containing protein n=1 Tax=Tri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8046contigH-canaliculatus_M_contigs8046:315..3175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMW3
PFAMsAn_peroxidase,Cyt-b5,DOMON,FAD_binding_6,Fer2,NAD_binding_1
Model size1128
Max annot lvl2759|Eukaryota
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.27e-38
EggNOG OGsCOG0543@1|root,KOG0534@2759|Eukaryota
EC1.6.2.2
Descriptioncytochrome-b5 reductase activity, acting on NAD(P)H
Cds size1128
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.683737-CDS-H-canaliculatus_M_contigs8046:314..6021696854132.683737-CDS-H-canaliculatus_M_contigs8046:314..602Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8046 315..602 -
1696854132.6962354-CDS-H-canaliculatus_M_contigs8046:1296..14451696854132.6962354-CDS-H-canaliculatus_M_contigs8046:1296..1445Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8046 1297..1445 -
1696854132.7078357-CDS-H-canaliculatus_M_contigs8046:2430..26821696854132.7078357-CDS-H-canaliculatus_M_contigs8046:2430..2682Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8046 2431..2682 -
1696854132.7192307-CDS-H-canaliculatus_M_contigs8046:2736..31751696854132.7192307-CDS-H-canaliculatus_M_contigs8046:2736..3175Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8046 2737..3175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8046.1.1prot_H-canaliculatus_M_contigs8046.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8046 315..3175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8046.1.1

>prot_H-canaliculatus_M_contigs8046.1.1 ID=prot_H-canaliculatus_M_contigs8046.1.1|Name=mRNA_H-canaliculatus_M_contigs8046.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=376bp
GDRHSFKNKGDLPSLVVGAGFLFARHRSSLRADGERREVVIDADSGGGSA
RSSSSSSSSSSSSSSNDKVARDEEEAAAEVESGVGKAAVSATSPGARVGS
GESSPASSTRRRSAAGRSGRGGGGRVRQQQEQQRQQQQQQQQQQRKRRRW
AAEQEESGGGDWQGMGDWGQDDESGMEDAGVDMGTDMEMDALAEEEDWVE
MDEATEDSRQRQQQQQQQQQQQQQRPRRRYLSSSRPSLEVSLDTSVLPEP
VGPLVVWGTPLAAVLGAVAVTARVSRLLGANNNNNNNNRTPLPSPSAVIS
DLRYGARLWGGSVSSWVSRRSQQWGRVFGPKEVVLPAEDWSVCSLLAKTR
EGGGGGGGGGGDGGGSGGVYRYRFGL
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mRNA from alignment at H-canaliculatus_M_contigs8046:315..3175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8046.1.1 ID=mRNA_H-canaliculatus_M_contigs8046.1.1|Name=mRNA_H-canaliculatus_M_contigs8046.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2861bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8046:315..3175- (Hapterophycus canaliculatus Oshoro7m male)
GGAGACCGCCATTCCTTCAAAAACAAGGGGGACTTGCCATCGCTGGTGGT
AGGCGCCGGCTTTCTCTTCGCCCGGCACCGTAGCTCGCTGCGGGCCGACG
GAGAGCGGAGGGAGGTGGTGATCGACGCCGACAGTGGTGGTGGTAGCGCC
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGA
CAAGGTCGCGCGCGACGAGGAAGAGGCGGCGGCCGAGGTCGAGAGCGGGG
TGGGGAAGGCAGCGGTGTCGGCGACCTCCCCCGGGGCAAGGGTGGGGTCT
GGGGAGTCTTCTCCCGCATCTTCTACGAGACGACGAAGCGCCGCCGGTCG
CTCTGGCAGGGGCGGCGGTGGTCGCGTGAGGCAACAGCAAGAGCAGCAGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGAAACGTCAGCGAGGG
AGAGTGGAAGAGTTCTCTCGTTCTCGGCCCACCCTTTCGCGAGGAAGGAG
ATGGGCGGCGGAGCAGGAGGAGAGCGGCGGCGGCGACTGGCAAGGGATGG
GGGACTGGGGGCAAGACGATGAGAGCGGGATGGAGGACGCGGGAGTGGAC
ATGGGAACCGACATGGAGATGGACGCGTTGGCGGAGGAGGAGGACTGGGT
TGAGATGGATGAAGCCACGGAGGACAGCCGGCAGCGGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGACCGCGGCGGCGTTATCGTGAA
GTGGAGGTAAGACGAAGAGGGGCGGGGGTGGGCTGGGCGATTATATTACC
TCTGCTGTTGTAGTATAAGATTGCATTTTCTGTGGAACACTAACCCATAC
ACCACTCACTCAGCCTGGAGCACAGGTCGGTCTTGTCCGCGCACGCCGTG
CTGCTGTAGTAGAATGCTTGCGTATATGCGGGTGGCTTGCCGGCGCGGCT
GGAGGAACAGGCCGGTCTCAAGGCAGCTCGGAAGAACCAGGCGTTGATCA
GGTTGCGAGGTACCCGCATTAACCGTGGCGGGCTCAGAATCGAACCGCCG
AACCGGCCGCACCGCAAGGCCGCTAGTGCCCACTGTCCCGCAGCAGCCTT
GAAAACTGAACGCCAAAACAGCACCGAAAAGGAACCGTGCTGGTGGGGCG
GAAGGGTGCGGTAGCGAGGGCAACGTCTTCAAGAGAGGTTGCGTGGAGAG
ACCAAGGGATGGCCGAGAGGCGGCACTTTTTCCCCCTTCCGCGTTTTTTT
TTTTTTTCTTCTTCATTTTGTGGCATATTTGAAGCGCTCGCGTTCCTTCC
CGGTGTGCCGAAAACTCAGACAGCAGAGGTAGCGGGCCCCGGCGGTTTGG
TGTCACGCTGGTTGCTCAGTAGACCATGCTGCTGATTACAGGTTGTAAAG
TCCCTCGTCCCTTCCACGGGGACTCCGGTTTTGCGCTCCTTCGCTTCCTC
GTCGGAGGAAAGTACTCAACGCCACAGGAGCAGAGCCTTACGCAGACAGG
ACAGGATTCCGCCCTCTCTGTGCAGTGAGAGTACGATACGGACGGTCGGC
ACAGAGGGCCGAGAGCCGTAGAGCACCGTGACGAAACCAATCCTCGCAGA
GCCTTGCAAAGCCCAGTCTTTTCCGTGGCGTCGCCGCCTCTGCGTCCGCG
TTCGCGTGTTTTCTTCCGTCACCGGCAGCAGAGGACGAAGACCCTGGCCG
CGGCGCGTACCGCCGGTCCCGCCTCCTCAGTCTCCTCGTCCCGCCCGTCC
TTGGAGGTCAGCCTGGACACCTCCGTCCTGCCCGAGCCCGTGGGGCCGCT
GGTGGTGTGGGGGACCCCGCTCGCGGCCGTGCTCGGTGCCGTGGCGGTGA
CCGCGCGAGTCTCTCGCTTGCTGGGAGCCGTTTTAGGGTGAGACAGGACG
AGAGGAAGGGGCAAAAGACGTGCGTGTGTGTGCGTGTGTGCGTGTGCGCG
TGTGTATGTGTGTGTGTGTGTGTGTGTGGTAAGACGTTGTTGTCTGGGTC
GAAGGAACCATTACTGGTTTTGTGGTGTGTCGAGAAAGTGGGGATTCCTC
TCGCTTGCCCGGGGTTGTTGGGTGAGAGGACTGGAAAGAGGAAAATGAGA
CCAGAAGAGGGGAGTGAGAGAGTATTCCTCTTTTTCTGGATGGAGGCGGC
GGGAGGGGGGAAGGGGGAGCTCGTCGTTAGTCGTGCCGGGTGATCAGAGC
CGGGTTGTCAAAAGTAGGGGCAGGGTGAGCCGTGTTGTTTTTTGCCGCAT
ACAGTCGGCGTGTTCTCGCCGACTCAAAGAGAACGTACAATTATCGTACA
AGTATCTCATTCGGATGGCAGAAGTTCGATACTGGTCTTGAAGTACAGCT
ACCCAGCTGCGTCGACTCTCTCTCTGCAATGACGCCGATCTCCCTCCGCT
CCCCCCCGCCCGTATCCCCTCCTCGAATCTCGCGGGATCGTCGACTGTAT
TCCACGACAAATGCCGTGACGACCTTTTCCCCCCTCGCTGGAATCCCGTG
CAGGCTGGTGAGCAGGGGCAGGGATGCGATGAGCAAGACGACCGTTCCAG
GCCCGGCCTACAACAACAACAAGAACAACAACAACAACAACAACAACAGG
ACCCCCCTCCCTTCCCCGTCCGCCGTGATAAGCGACCTCCGCTACGGCGC
ACGGCTGTGGGGGGGCTCCGTCAGTTCGTGGGTCTCCCGGCGCTCGCAGC
AGTGGGGGAGGGTGTTCGGGCCGAAGGAAGTGGTGCTGCCCGCGGAGGAC
TGGTCGGTGTGCTCGCTCCTCGCCAAGACGAGGGAGGGTGGCGGCGGCGG
CGGCGGCGGCGGCGGCGATGGCGGTGGGAGCGGCGGTGTATACCGCTACC
GGTTCGGCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8046:315..3175-

>mRNA_H-canaliculatus_M_contigs8046.1.1 ID=mRNA_H-canaliculatus_M_contigs8046.1.1|Name=mRNA_H-canaliculatus_M_contigs8046.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1128bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8046:315..3175- (Hapterophycus canaliculatus Oshoro7m male)
GGAGACCGCCATTCCTTCAAAAACAAGGGGGACTTGCCATCGCTGGTGGT
AGGCGCCGGCTTTCTCTTCGCCCGGCACCGTAGCTCGCTGCGGGCCGACG
GAGAGCGGAGGGAGGTGGTGATCGACGCCGACAGTGGTGGTGGTAGCGCC
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGA
CAAGGTCGCGCGCGACGAGGAAGAGGCGGCGGCCGAGGTCGAGAGCGGGG
TGGGGAAGGCAGCGGTGTCGGCGACCTCCCCCGGGGCAAGGGTGGGGTCT
GGGGAGTCTTCTCCCGCATCTTCTACGAGACGACGAAGCGCCGCCGGTCG
CTCTGGCAGGGGCGGCGGTGGTCGCGTGAGGCAACAGCAAGAGCAGCAGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGAAACGAAGGAGATGG
GCGGCGGAGCAGGAGGAGAGCGGCGGCGGCGACTGGCAAGGGATGGGGGA
CTGGGGGCAAGACGATGAGAGCGGGATGGAGGACGCGGGAGTGGACATGG
GAACCGACATGGAGATGGACGCGTTGGCGGAGGAGGAGGACTGGGTTGAG
ATGGATGAAGCCACGGAGGACAGCCGGCAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGACCGCGGCGGCGTTATCTCTCCTCGT
CCCGCCCGTCCTTGGAGGTCAGCCTGGACACCTCCGTCCTGCCCGAGCCC
GTGGGGCCGCTGGTGGTGTGGGGGACCCCGCTCGCGGCCGTGCTCGGTGC
CGTGGCGGTGACCGCGCGAGTCTCTCGCTTGCTGGGAGCCAACAACAACA
ACAACAACAACAACAGGACCCCCCTCCCTTCCCCGTCCGCCGTGATAAGC
GACCTCCGCTACGGCGCACGGCTGTGGGGGGGCTCCGTCAGTTCGTGGGT
CTCCCGGCGCTCGCAGCAGTGGGGGAGGGTGTTCGGGCCGAAGGAAGTGG
TGCTGCCCGCGGAGGACTGGTCGGTGTGCTCGCTCCTCGCCAAGACGAGG
GAGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGGCGGTGGGAGCGG
CGGTGTATACCGCTACCGGTTCGGCCTG
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