mRNA_H-canaliculatus_M_contigs8036.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8036.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8036.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: CYTH (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM87_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 7.070e-60
Identity = 104/140 (74.29%), Postives = 119/140 (85.00%), Query Frame = 1
Query:    1 ERYAYAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTWEQTRTRGKLLTSG 420
            +R+AYAYCHGFLSGP S+KGQALRKS+L V V+LSLLNLNG  NDPGAI+CSGA++AVRAFHL+ + A GD GLKLRLVGSSLGGF+VARYAELYP EVDRIFMLCPSFGLGTRA  F +EA M  WE+T  R   L++G
Sbjct:   39 QRFAYAYCHGFLSGPGSIKGQALRKSLLEVDVELSLLNLNGG-NDPGAITCSGAVEAVRAFHLQQKCALGDQGLKLRLVGSSLGGFVVARYAELYPEEVDRIFMLCPSFGLGTRAGKFASEAEMAEWERTGARVFSLSTG 177          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.110e-32
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    7 YAYAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTWEQTRTRGKL 408
            YAYAYCHGFLS P S KG  +RK +  +  D+ LL+LN P+   G ++ +  L A+  F  + R   G  G+KLRL+GSSLGG+IVAR+AEL+P  VDRIFMLCP+F +G RA  F     M  WE+   RG+L
Sbjct:   23 YAYAYCHGFLSYPRSTKGVHVRKELQHLA-DIELLDLNLPDGS-GVVTYASGLAAIERFLEQQRLLHGH-GVKLRLIGSSLGGYIVARFAELHPEAVDRIFMLCPAFSIGERASKFLPPEEMAEWERDGVRGEL 153          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P1I8_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 9.720e-22
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   13 YAYCHGFLSGPASVKGQALRKSMLA-VGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTR 342
            YAY HGFLSGP S KG  + +++ A   +DLSLL+LNGP          G L+  RA        +   G  LRL+GSS GG+ VARYAELYP  VDR+ +LCPSF LG+R
Sbjct:    8 YAYAHGFLSGPTSSKGLFIHRALQARFSLDLSLLDLNGPAG-------IGGLRPERALSAIDECYAAGSGTPLRLIGSSFGGWAVARYAELYPDRVDRMLLLCPSFRLGSR 111          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: CYTH (domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EN47_VITBC)

HSP 1 Score: 101 bits (251), Expect = 4.360e-20
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    7 YAYAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTWEQT 390
            + Y Y HG+LSGP S KG  L+  +  +G+DL L++LN  +  PG ++  GAL AV         A G+  +KLRL+GSSLGG+  ARYAEL+P  VDR+ +LCP+F        F N+   +T E T
Sbjct:    9 FRYVYLHGWLSGPQSFKGTFLKDKLSPLGIDLQLIDLNRGK-PPGQMTYDGALIAVDEVWEREAGAHGEGEVKLRLIGSSLGGYFAARYAELHPNRVDRMVLLCPAFD-------FHNQFRKLTGENT 128          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: Esterase (YqiA n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YLX8_9DELT)

HSP 1 Score: 93.6 bits (231), Expect = 2.850e-18
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    4 RYAYAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASG-DPGL-KLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTWEQ 387
            R  +AY HGF S P + KGQALR      G+DL   +LN P     A++ +G L A+ +   E+    G +PG  + R VGSS+GG++ AR+A L+P  VDR+ +LCP+F    R      +AG   W +
Sbjct:    2 RIRHAYLHGFASSPQARKGQALRSYYAEQGIDLHTPDLNAPSF--AALTYTGMLDALDSLDSELDATEGVEPGSSRWRFVGSSMGGYLAARWASLHPERVDRLLLLCPAFDFAARWPQILGQAGFDRWRE 129          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: Alpha/beta (fold hydrolase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IC20_9DELT)

HSP 1 Score: 89.4 bits (220), Expect = 2.110e-17
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    7 YAYAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTWE 384
            Y YAY HGF S P S+K + L +   A G  L L +LN P      ++ SGAL+A+     +I    G P    RLVGSS+GG++ AR+AEL+P  VDR+ +LCP F L  R  T   +  M  W+
Sbjct:    5 YRYAYLHGFASSPLSIKARRLAEIFAAHGHILHLPDLNQPSF--AKLTVSGALEALERLDAQIE---GGPW---RLVGSSMGGYLAARFAELHPQRVDRLVLLCPGFDLLQRWPTLFGKRRMDQWK 122          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: Alpha/beta (hydrolase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NP74_9DELT)

HSP 1 Score: 89.0 bits (219), Expect = 3.800e-17
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   13 YAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTW 381
            YAY HGF S P + KG AL K+    G D  L +LN P  +   +S    L A+ A H   R  + D G +  L+GSSLGG++ AR+AE++PA V+R+ +LCP F L  R         M  W
Sbjct:   10 YAYLHGFASSPKATKGVALAKAFRDRGHDFELPDLNQPAFE--GLSHDACLGALDAMH---RNRAADDGARWCLIGSSLGGWLAARWAEMHPARVERLVLLCPGFDLRDRWPAMLGSEKMAKW 127          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: CYTH (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CST7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.130e-17
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   13 YAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDP-GAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTW 381
            YAY HGFLS   S KG+ L++ + +    L LLNLNG   +  G IS S  L A+RA + +     G+  +KL LVGSSLGG++ AR+AELYP  V+++ + CP F L  R       A M  W
Sbjct:   46 YAYAHGFLSDENSFKGRHLQQFLASRNAHLHLLNLNGGVGEGMGGISYSRGLAAIRALYDKEGGREGN--VKLTLVGSSLGGYVAARFAELYPEAVEKLVLFCPGFDLQARWPRRLGGAAMRAW 167          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: Alpha/beta (hydrolase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E5HQR4_9DELT)

HSP 1 Score: 88.2 bits (217), Expect = 5.940e-17
Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   13 YAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASGDPGLKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTWE 384
            YA+ HGF S P S KG  + ++  A GV L LLNLN P      ++ + AL+A+   H     A    G + RL GSS+GG++ AR+AEL P +V+R+ +LCP F L  R      E     WE
Sbjct:    4 YAHLHGFASSPRSHKGTHMARAFSARGVTLKLLNLNRPSF--ARLTYTAALEAMTEAH-----AQAPEGTRWRLSGSSMGGWVAARWAELNPDKVERLLLLCPGFNLMERWPALLGEEAWARWE 120          
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C1Z3Q2_9DELT)

HSP 1 Score: 87.8 bits (216), Expect = 3.190e-16
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   13 YAYCHGFLSGPASVKGQALRKSMLAVGVDLSLLNLNGPENDPGAISCSGALQAVRAFHLEIRTASG-DPG-LKLRLVGSSLGGFIVARYAELYPAEVDRIFMLCPSFGLGTRAQTFDNEAGMVTWEQ 387
            +AY HGF S P + KGQALR+     G++L   NLN P      +S +G L A+     E+    G +PG  + R VGSS+GG++ AR+A L+P  VDR+ +LCP+F    R      + G   W +
Sbjct:    5 HAYLHGFASSPQARKGQALRRYYAKQGLELHTPNLNAPSF--AKLSYTGMLAALDELDRELDLTEGVEPGSTRWRFVGSSMGGYLAARWASLHPERVDRLILLCPAFDFVERWPQILGQTGFDQWRE 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8036.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CYTH7.070e-6074.29domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Uncharacterized5.110e-3250.75protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical9.720e-2250.45protein n=1 Tax=Calcidiscus leptoporus TaxID=12754... [more]
CYTH4.360e-2043.75domain-containing protein n=2 Tax=Vitrella brassic... [more]
Esterase2.850e-1839.23YqiA n=1 Tax=Enhygromyxa salina TaxID=215803 RepID... [more]
Alpha/beta2.110e-1742.06fold hydrolase n=1 Tax=Bradymonadaceae bacterium T... [more]
Alpha/beta3.800e-1740.65hydrolase n=1 Tax=Deltaproteobacteria bacterium Ta... [more]
CYTH4.130e-1743.55domain-containing protein n=1 Tax=Nannochloropsis ... [more]
Alpha/beta5.940e-1740.32hydrolase n=1 Tax=Myxococcales bacterium TaxID=202... [more]
Uncharacterized3.190e-1638.58protein n=1 Tax=Enhygromyxa salina TaxID=215803 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8036contigH-canaliculatus_M_contigs8036:180..1810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRD6
PFAMsAbhydrolase_1,UPF0227
Model size979
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons3
Evalue2.41e-41
EggNOG OGs2E3SU@1|root,2SAT4@2759|Eukaryota
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.216342-CDS-H-canaliculatus_M_contigs8036:179..3991696854132.216342-CDS-H-canaliculatus_M_contigs8036:179..399Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8036 180..399 -
1696854132.233904-CDS-H-canaliculatus_M_contigs8036:638..11261696854132.233904-CDS-H-canaliculatus_M_contigs8036:638..1126Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8036 639..1126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854132.2454085-UTR-H-canaliculatus_M_contigs8036:1126..11281696854132.2454085-UTR-H-canaliculatus_M_contigs8036:1126..1128Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8036 1127..1128 -
1696854132.257935-UTR-H-canaliculatus_M_contigs8036:1541..18101696854132.257935-UTR-H-canaliculatus_M_contigs8036:1541..1810Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8036 1542..1810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8036.1.1prot_H-canaliculatus_M_contigs8036.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8036 180..1126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8036.1.1

>prot_H-canaliculatus_M_contigs8036.1.1 ID=prot_H-canaliculatus_M_contigs8036.1.1|Name=mRNA_H-canaliculatus_M_contigs8036.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=236bp
MRNFIRQRLIASSCSVRALAWEQELKPLTTKQEWSRGSRQGQEASYLRAA
GGPTLAHPSSCLPIGAIPCIRDVFCWHARWRALNKGCFNCPAPLPDGPSS
LVARTLAAFPLSTGGEANVPWAFVREARRQPDYPAYACPAVIVHGLLDDV
VPVAATRSLVEGSGDLARHTFATFVEDDHALTQPPTMALIAKALVEFFDV
GKKEGIESAGGAAAVEEAVEKSHRSARQENIEVKTK
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mRNA from alignment at H-canaliculatus_M_contigs8036:180..1810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8036.1.1 ID=mRNA_H-canaliculatus_M_contigs8036.1.1|Name=mRNA_H-canaliculatus_M_contigs8036.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1631bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8036:180..1810- (Hapterophycus canaliculatus Oshoro7m male)
GAGCGGTACGCCTACGCCTATTGCCATGGCTTCCTCAGCGGTCCTGCATC TGTAAAAGGTCAGGCTCTGCGCAAGAGCATGCTGGCGGTGGGTGTGGACC TATCGCTACTGAATCTCAACGGCCCGGAGAATGATCCGGGCGCGATATCA TGCTCCGGAGCATTGCAAGCCGTGCGGGCATTTCATTTGGAGATCAGGAC TGCGTCAGGCGACCCAGGACTAAAGTTGAGGCTTGTTGGCAGCAGTCTTG GTGGCTTCATCGTTGCAAGGTGTGTATGGCGCTCACTCTGGGTCGGCTTG ATTGTCTTGTGGTCAAGATAGATCGACGTATGTTTAAACTTTTTTGTCTT CAGAGAGAAAAACATTAGTGGCACGCAGAGAGAAAACATTTGTGGCAAAA ACATTTGTGGCACGCAATTTGCTGATTGGTCAACTCACCTTTTTTTTGCC ATTTTTCAAATTGCGCCGCAGGTGAGTTGACCAATCAGCGAATTGCGTGC CACAATTGTTTTTCTCTCGTTCCTTGCGGCCTTGGAAATGATTCAGTTCC CGTCCGTTTGTCATTATGAAGTTGTATCAGCTTTCACGTGGAGATACGCA AAGAGCGATGATCCTTCTCTCTGTTCGATACGTTGAAGGTTGCATGATTC GTTACCACGAACGACGTCGATTTCGCCGCCAGGTATGCGGAACTTTATCC GGCAGAGGTTGATCGCATCTTCATGCTCTGTCCGAGCTTTGGCCTGGGAA CAAGAGCTCAAACCTTTGACAACGAAGCAGGAATGGTCACGTGGGAGCAG ACAAGGACAAGAGGCAAGTTACTTACGAGCGGCAGGAGGCCCCACTCTCG CCCACCCATCCTCATGCCTCCCAATAGGCGCCATTCCATGCATCCGTGAC GTGTTTTGTTGGCACGCGCGTTGGAGGGCACTGAACAAAGGATGCTTTAA TTGCCCTGCGCCCTTGCCTGATGGACCGTCTTCCCTCGTGGCTCGCACGC TTGCAGCGTTCCCCTTGTCAACCGGCGGCGAAGCAAACGTCCCTTGGGCC TTTGTACGCGAGGCCAGGCGTCAGCCGGACTACCCGGCCTACGCCTGTCC GGCGGTGATTGTGCACGGTCTGCTAGATGACGTTGTACCGGTGGCGGCCA CCAGATCGCTCGTGGAAGGGAGGTAGGCTTAAAGCAGGGGACAACGTCCT GACGTTGCTACAAAGTTACGGCAATTGTTCTGCGAGCCTCAACGCGTGGA TTTGAAGTAAGAAACAGAAAACAGTCATCCGTCGTGTGGGCGATAGCCCT GCGAATGTCCAACGAGTCAACGGTATGCTTGTGTTTCTCGGGCGTTGCTG TGAATGCTCCATCGTTTCTGAGTGTCATGCCCTCACGCCATGCATGGTTA AATTTGAACAGCGGAGACTTGGCAAGGCACACGTTCGCGACGTTCGTGGA GGATGATCATGCGCTCACGCAGCCGCCAACCATGGCACTTATAGCCAAGG CGCTAGTCGAGTTCTTTGATGTGGGTAAAAAAGAGGGCATAGAGAGCGCT GGAGGGGCTGCGGCGGTTGAAGAGGCCGTCGAAAAATCACATCGATCAGC TCGACAGGAAAACATCGAGGTGAAAACAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8036:180..1810-

>mRNA_H-canaliculatus_M_contigs8036.1.1 ID=mRNA_H-canaliculatus_M_contigs8036.1.1|Name=mRNA_H-canaliculatus_M_contigs8036.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8036:180..1810- (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGAACTTTATCCGGCAGAGGTTGATCGCATCTTCATGCTCTGTCCG
AGCTTTGGCCTGGGAACAAGAGCTCAAACCTTTGACAACGAAGCAGGAAT
GGTCACGTGGGAGCAGACAAGGACAAGAGGCAAGTTACTTACGAGCGGCA
GGAGGCCCCACTCTCGCCCACCCATCCTCATGCCTCCCAATAGGCGCCAT
TCCATGCATCCGTGACGTGTTTTGTTGGCACGCGCGTTGGAGGGCACTGA
ACAAAGGATGCTTTAATTGCCCTGCGCCCTTGCCTGATGGACCGTCTTCC
CTCGTGGCTCGCACGCTTGCAGCGTTCCCCTTGTCAACCGGCGGCGAAGC
AAACGTCCCTTGGGCCTTTGTACGCGAGGCCAGGCGTCAGCCGGACTACC
CGGCCTACGCCTGTCCGGCGGTGATTGTGCACGGTCTGCTAGATGACGTT
GTACCGGTGGCGGCCACCAGATCGCTCGTGGAAGGGAGCGGAGACTTGGC
AAGGCACACGTTCGCGACGTTCGTGGAGGATGATCATGCGCTCACGCAGC
CGCCAACCATGGCACTTATAGCCAAGGCGCTAGTCGAGTTCTTTGATGTG
GGTAAAAAAGAGGGCATAGAGAGCGCTGGAGGGGCTGCGGCGGTTGAAGA
GGCCGTCGAAAAATCACATCGATCAGCTCGACAGGAAAACATCGAGGTGA
AAACAAAG
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