mRNA_H-canaliculatus_M_contigs8032.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE) HSP 1 Score: 403 bits (1035), Expect = 3.710e-134 Identity = 233/409 (56.97%), Postives = 270/409 (66.01%), Query Frame = 1
Query: 1 PLEVLHLDEDFAAICKPPLMHVHRPEFGTKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEAVKVLHQALADPRSSKTYVAIVRGSGQGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLATLPGAGSSVWKSAAGGELSSSGAAAVTAEGVYRESGIKFEHPPLVRGEGGEVNRTRGSGGGSDEAGPSQEE----GKAARVDTGGAAAAGSARKGVQTPAEPKKALSEAS----RATLGLESARAFPA---------EPLLDVRGETSGGEVLPSTIQGAAAAGSSGPIDVGAGSEEGVLKGKGFRVYSEPPDDIMKFLRGMSWWEEGMI 1176
PLEVLH +E FA + KPP MH HRPEFG++D +FVMQKAR+QLGRR+FLPHRLDR TSGCLL+GF A KVLHQ LA P SSKTY+AIVRGSG FVGKGWFTVDR IKD+KKILREASTRFLFV+GG+DPDPRCC VLAQPSTGRFHQIRRHLNGLSHPIVGDSVHG+ RFNREVA HRN APAGRLMLHCLRLSL TLP GS KSA G LS T Y S K E RG + RG PS++ G VD A A+GS + VQ P E +KA S + +SAR PA EP + E S + PS + ++ P + ++E +++ +GF VY+EPPDD+M+FLRGMSWWEEG+
Sbjct: 131 PLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGHRNSAPAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPD---KDTMTNDYCGSKRKSE-----RGHNARAGQERGER-------PSRKREDGHGNTTGVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAA-ISPSVGKKESSTRGCRPRGIDGEAQEDLVE-EGFHVYAEPPDDMMEFLRGMSWWEEGLF 522
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA) HSP 1 Score: 179 bits (454), Expect = 2.740e-49 Identity = 104/238 (43.70%), Postives = 137/238 (57.56%), Query Frame = 1
Query: 1 PLEVLHLDED-FAAICKPPLMHVHRPEF-------GTKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEA------------------------VKVLHQALADPRSSKTYVAIVRGS----GQGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDP-DPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLATL 603
P +L D + + KPP + HR ++ GT + ++Q+ R+Q+GRR+ L HRLDRG SGCLLL F ++ + L +LAD R+ KTYVA+VRG G+ +GWF VDR I+D + + REA T+F FV G DD R +VLA+P TGR+HQIRRHLNGLSHPI+GDS HGNSR NRE + R P RL LH ++SL +L
Sbjct: 67 PTRILSTDSSTYLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCAARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREWRSKRG-LPGQRLCLHLAKMSLPSL 303
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA) HSP 1 Score: 177 bits (448), Expect = 7.210e-49 Identity = 104/212 (49.06%), Postives = 126/212 (59.43%), Query Frame = 1
Query: 4 LEVLHLDEDFAAICKPPLMHVHRPEF-GTKDKEFVM-QKARNQLGRRIFLPHRLDRGTSGCLLLGFGPE-------AVKVLHQALADPRSSKTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPDP--RCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 594
+E+L A KPP + H ++ G K+ E M Q+ R+ +GRR+ L HRLDRG SGCLL E KVL AL P ++KTYVAIVRG G + F GKGWF +DR IKD+ I A T F FV G + + R LVLA+PSTGR+HQIRRHLNGLSHPI+GDS HGNSR NRE P R+ LH R+ L
Sbjct: 55 VEILSRGPHHAIANKPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNREW--RDRGLPGERICLHLARIQL 264
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO) HSP 1 Score: 176 bits (446), Expect = 1.900e-48 Identity = 99/209 (47.37%), Postives = 135/209 (64.59%), Query Frame = 1
Query: 4 LEVLHLDEDFAAICKPPLMHVHRPEF-GTKDKEFV--MQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEA-VKVLHQALADPRSSKTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD--PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLAT 600
+ +L +D+ + KPP + H ++ G++ ++ + +Q+ R +G RI L HRLDRG SGCLL+ + + L QA+A+ ++KTY+AIVRG G + KGWF VDR IK+++ +L EAST F FV G + D PR LVLA+P TGR+HQIRRHLNGLSHPI+GDS HGNS+ N+E A R P R LH RL L+T
Sbjct: 58 ITILAKSDDYLVVDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKDGKTATLSQAMAE-NATKTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRAQRGMLPE-RTCLHLARLQLST 264
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO) HSP 1 Score: 169 bits (428), Expect = 9.150e-46 Identity = 95/211 (45.02%), Postives = 134/211 (63.51%), Query Frame = 1
Query: 4 LEVLHLDEDFAAICKPPLMHVHRPEF-GTKDKEFV--MQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPE---AVKVLHQALADPRSSKTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD--PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLAT 600
+ ++ +D+ + KPP + H E+ G++ ++ + +Q+ R +G RI L HRLDR SGCLL+ + + + QA+A+ ++KTY+A+VRG G + KGWF VDR IK+++ +L EAST F FV G + D PR LVLA+P TGR+HQIRRHLNGLSHPI+GDS HGNS+ N+E + R P R LH RL L+T
Sbjct: 54 ITIVAKSDDYLVVDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAE-NATKTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQRGMLPE-RTCLHLARLQLST 262
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.250e-45 Identity = 102/221 (46.15%), Postives = 129/221 (58.37%), Query Frame = 1
Query: 1 PLEVLHLDEDFAAICKPPLMHVHRPEFGTKDKEF-VMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGP-----EAVKVLHQALADPRSSKTYVAIVRGSG---QGFVGK-------------GWFTVDRAIKDDKKILREASTRFLFVKG-GDDPDPRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 594
PLE+L+ + FA + KP + H E+ KD ++Q+AR+ LGRR+ L HRLDRG SGC++ + E L +ALA KTYVA+VRG G + + K GWF VDR IKDD+ A+T F FV G + R LV A+P+TGR+HQIRRHLNGLSHPI+GDS HGNSR NRE R+ P RL LH R+SL
Sbjct: 41 PLEILYEGDTFAIVAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALAA--GQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREWRKERD-LPGARLCLHLCRISL 258
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC) HSP 1 Score: 155 bits (392), Expect = 1.170e-40 Identity = 96/219 (43.84%), Postives = 125/219 (57.08%), Query Frame = 1
Query: 10 VLHLDEDFAAICKPPLMHVHRPEF-GTKDKEF---VMQKARNQLGRR-IFLPHRLDRGTSGCLLLGFG----------PEAVKVLHQALADPRSSKTYVAIVRGSG--QG--FVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD-----PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 594
+L + + + KPP + H E+ G++ F ++Q+ R +G + L HRL+ G SGCLLL + P L ++ + S KTY+A+VRG G QG F +GWF VDR IK++K IL A+T F FV G D+ PR LVLA+P TGR+HQIRRHLNGLSHPI+GD+ HGNS NRE R PA R LH RL L
Sbjct: 91 ILARTDRYVVVAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREWRDLRG-MPAQRTCLHLARLQL 308
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: Pseudouridine (synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.540e-40 Identity = 89/226 (39.38%), Postives = 127/226 (56.19%), Query Frame = 1
Query: 4 LEVLHLDEDFAAICKPPLMHVHRPEFG-----------TKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGF------GPEAVKVLHQALADPRSS-----KTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD---PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSL 594
+ +L ++ + KP + HR ++ T ++ ++Q+ R +G ++ L HRLDRG SGCLL F G A ++ + + + SS KTY+AIVRG G + F +GWF VDR IKD+ L+ A++ F F+ G DD + PR LVLA+ TGR+HQIR+HLNGLSHPI+GDS HG S+ NRE + R+ LH L+L L
Sbjct: 12 VSILDRGDNHVVVSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWI-EKWDLKRERICLHLLKLEL 236
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: PseudoU_synth_2 (domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.340e-39 Identity = 92/229 (40.17%), Postives = 127/229 (55.46%), Query Frame = 1
Query: 4 LEVLHLDEDFAAICKPPLMHVHRPEFGTKDKEF-----------VMQKARNQLGRRIFLPHRLDRGTSGCLLLGF------GPEAVKVLHQALADPRSS-KTYVAIVRGSG----QGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPD------PRCCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNREVAAHRNPAPAGRLMLHCLRLSLATLP 606
+ +L + + KPP + HR ++ K+ ++Q+AR +G R+ L HRLDRG SGCLL+ F G A VL +++ SS KTY+A+VRG G + F +GWF V R IK++ L+ A++ F F+ G + + PR LVLA+ TGR+HQIR+HLNGLSHPI+GDS HGNS+ NRE P R LH L+L L P
Sbjct: 97 VSILDRGPNHLVVSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREWRQKWGLEPE-RTCLHLLKLELPATP 324
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Match: PseudoU_synth_2 (domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EHE9_EMIHU) HSP 1 Score: 142 bits (359), Expect = 5.860e-37 Identity = 74/178 (41.57%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 31 FAAICKPPLMHVHRPEFGTKDKEFVMQKARNQLGRRIFLPHRLDRGTSGCLLLGFGPEAVKVLHQALADPRSSKTYVAIVRGSGQGFVGKGWFTVDRAIKDDKKILREASTRFLFVKGGDDPDPR-------------CCLVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGNSRFNR 525
F + KP + VHR ++ K ++Q R+QLG ++ HRLD GTSGCL+ E L +A A R KTY+A+ RG+ +G+G V+R ++DDK +LR A T + + G D + LV+A+P+TGRFHQIR+HL GLSHPI+GD+ HG+SR NR
Sbjct: 24 FCVVAKPAGLVVHRNDWSRKGDVALLQLLRDQLGTQVNPVHRLDAGTSGCLVFAEDSETTAALQRAFASGRVRKTYIAVARGNAMPTLGEG-LVVERPVRDDKGVLRAARTELMCLGGCDGEEVAGEGEAVTGRLNLGASLVVAEPTTGRFHQIRKHLGGLSHPILGDAKHGDSRVNR 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8032.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8032.1.1 >prot_H-canaliculatus_M_contigs8032.1.1 ID=prot_H-canaliculatus_M_contigs8032.1.1|Name=mRNA_H-canaliculatus_M_contigs8032.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=392bp PLEVLHLDEDFAAICKPPLMHVHRPEFGTKDKEFVMQKARNQLGRRIFLPback to top mRNA from alignment at H-canaliculatus_M_contigs8032:1..2994+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8032.1.1 ID=mRNA_H-canaliculatus_M_contigs8032.1.1|Name=mRNA_H-canaliculatus_M_contigs8032.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2994bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8032:1..2994+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8032:1..2994+ >mRNA_H-canaliculatus_M_contigs8032.1.1 ID=mRNA_H-canaliculatus_M_contigs8032.1.1|Name=mRNA_H-canaliculatus_M_contigs8032.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1176bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8032:1..2994+ (Hapterophycus canaliculatus Oshoro7m male)back to top |