mRNA_H-canaliculatus_M_contigs8031.4.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8031.4.1
Unique NamemRNA_H-canaliculatus_M_contigs8031.4.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8031.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP77_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.530e-38
Identity = 103/233 (44.21%), Postives = 118/233 (50.64%), Query Frame = 1 
Query:    1 CCCAEEFCVMGAADITSLDDNFCHANLDLCMETEWSLWCFYGGILLAMVSVVLLVNSVALHHKTLLDCERRRDAAAKALRAANRSRRRRQELWEQEVYGGGSYMGSNFGAGESSCRMGGGHATIKNINNPAAHL-PVDRPTSR----ISAVAPSFETQTRSFSRRISRSIPTTVG-----VDFDGNNTRSAPLDPLDSNSNNDDIEMSRLESPTSAPMSQSGQDEGRGLVGGE 669
            CCCAEE CV+GAADI+ LDD+FCH  L+LCMET+WSLWC+YGGILLAM S+VLLVNSVALHHKTLLDCER                                                               L P +  +SR      A+APSFE+ TR + R+   +     G     V+F       A LDP        DIEMSRL SPTSA MSQSGQDEG G  GGE
Sbjct:  128 CCCAEELCVLGAADISPLDDSFCHTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKTLLDCERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLNPAETSSSRGRGGAPAIAPSFESPTRGYPRKPVATAEVGGGRVTPPVEF-------AALDPTGGT----DIEMSRLGSPTSAAMSQSGQDEGDGNFGGE 349
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8031.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN85_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.620e-30
Identity = 112/324 (34.57%), Postives = 130/324 (40.12%), Query Frame = 1 
Query:    1 CCCAEEFCVMGAADITSLDDNFCHANLDLCMETEWSLWCFYGGILLAMVSVVLLVNSVALHHK---------------------------------------------------------------------------------------------TLLDCERRRDAAAKALRAANRSRRRRQELWEQEVYGGGSYMGSNFGAGESSCRMGGGHATIKNINNPAAHL-PVDRPTSR----ISAVAPSFETQTRSFSRRISRSIPT-----TVGVDFDGNNTRSAPLDPLDSNSNNDDIEMSRLESPTSAPMSQSGQDEGRGLVG 663
            CCCAEE CV+GAADI+ LDD+FC+  L+LCMET+WSLWC+YGGILLAM S+VLLVNSVALHHK                                                                                             TLLDCERR + AAKA+RAANRSRR                                              L P +  +SR      AVAPSFE+  R + R+   +        T  V+F       A L P      + DIEMSRL SPTSA MSQSGQDEG G  G
Sbjct:  150 CCCAEELCVLGAADISPLDDSFCYTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKVLGRKEIVHLVQTQHDLLSKTQKNVPQQIIMRSSLTDVVGSGVVENLVGMEEVEEVDVADTVKTKQGRVRSEPHKARTHRTQDTLQSNRPIEETLLDCERRWNEAAKAIRAANRSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLLLNPAETASSRGRGGAPAVAPSFESPARGYPRKPVATAEVCGDRVTPPVEF-------AALYPA----RDTDIEMSRLGSPTSAAMSQSGQDEGDGNFG 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8031.4.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.530e-3844.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.620e-3034.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8031contigH-canaliculatus_M_contigs8031:3696..4789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size669
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_000540.1
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.843635-CDS-H-canaliculatus_M_contigs8031:3695..38011696854131.843635-CDS-H-canaliculatus_M_contigs8031:3695..3801Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8031 3696..3801 -
1696854131.8571677-CDS-H-canaliculatus_M_contigs8031:3837..42111696854131.8571677-CDS-H-canaliculatus_M_contigs8031:3837..4211Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8031 3838..4211 -
1696854131.8683903-CDS-H-canaliculatus_M_contigs8031:4600..47621696854131.8683903-CDS-H-canaliculatus_M_contigs8031:4600..4762Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8031 4601..4762 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.8789992-UTR-H-canaliculatus_M_contigs8031:4762..47891696854131.8789992-UTR-H-canaliculatus_M_contigs8031:4762..4789Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8031 4763..4789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8031.4.1prot_H-canaliculatus_M_contigs8031.4.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8031 3696..4762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8031.4.1

>prot_H-canaliculatus_M_contigs8031.4.1 ID=prot_H-canaliculatus_M_contigs8031.4.1|Name=mRNA_H-canaliculatus_M_contigs8031.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=214bp
MGAADITSLDDNFCHANLDLCMETEWSLWCFYGGILLAMVSVVLLVNSVA
LHHKTLLDCERRRDAAAKALRAANRSRRRRQELWEQEVYGGGSYMGSNFG
AGESSCRMGGGHATIKNINNPAAHLPVDRPTSRISAVAPSFETQTRSFSR
RISRSIPTTVGVDFDGNNTRSAPLDPLDSNSNNDDIEMSRLESPTSAPMS
QSGQDEGRGLVGGE
back to top

mRNA from alignment at H-canaliculatus_M_contigs8031:3696..4789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8031.4.1 ID=mRNA_H-canaliculatus_M_contigs8031.4.1|Name=mRNA_H-canaliculatus_M_contigs8031.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1094bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8031:3696..4789- (Hapterophycus canaliculatus Oshoro7m male)
TGCTGCTGCGCAGAGGAATTTTGCGTTATGGGTGCTGCCGACATCACCTC
TTTAGACGACAACTTCTGCCACGCGAACCTCGATCTGTGCATGGAAACGG
AGTGGTCCTTGTGGTGTTTTTACGGCGGGATCCTCCTTGCCATGGTCTCC
GTTGTCTTGCTGGTCAACTCGGTTGCCCTACATCACAAGGTACCCATGAA
CGTGACAAAATACTGTTTCCTACATACTTGCAGTGTCGGGATCAAATCCG
TAGCGCGTTGCACGCTCGCGACCCGTTTAGTGCTAAAAATTGAATGGCAG
GACACCTTCGTGGCCTAGAATACACTGCAATTGCTCCTCATGAACAAAAA
GGTTGCGCGTCACAACAAATGTGTTACCCATTTGAATGGTCTTGAGCTAA
CAAGATGATCTAGCATACCTTGGTTTTTCTTTGTCGCGTAAGGCCTCAAC
CGATCCACACGCTACGGTCGACCAAACGCTCAATCACGATGGCTGACCCA
GATACCACTCGTGTCTTCTTCGTTATTATCTTTCCCTGAATGGTGTATCC
ACCTCTTCCCGAATCGGAACGATTGCAGACTCTTCTGGACTGCGAGCGCC
GACGAGACGCGGCTGCTAAGGCACTCCGCGCGGCGAATCGCTCGAGACGC
CGCCGCCAAGAGCTCTGGGAGCAAGAAGTTTACGGCGGTGGGAGCTACAT
GGGCAGCAACTTCGGTGCAGGGGAATCCAGCTGCCGAATGGGTGGCGGTC
ACGCCACCATCAAAAACATCAACAATCCCGCCGCACACCTTCCCGTCGAC
AGGCCGACTTCCCGTATTAGCGCCGTGGCCCCGTCGTTCGAAACGCAGAC
GCGCAGCTTCTCTCGCAGGATTTCGCGGTCGATCCCCACCACGGTTGGTG
TCGACTTCGACGGGAACAACACCCGTTCAGCCCCGCTCGACCCGCTCGAT
TCGTGCTGCAACCACATCGTCGACGACAACGACGAAAGCAACAGCAACAA
CGATGATATTGAAATGAGCAGACTTGAATCCCCGACGTCTGCTCCGATGT
CTCAGAGCGGCCAAGACGAAGGTCGCGGCCTCGTAGGAGGCGAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8031:3696..4789-

>mRNA_H-canaliculatus_M_contigs8031.4.1 ID=mRNA_H-canaliculatus_M_contigs8031.4.1|Name=mRNA_H-canaliculatus_M_contigs8031.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8031:3696..4789- (Hapterophycus canaliculatus Oshoro7m male)
ATGGGTGCTGCCGACATCACCTCTTTAGACGACAACTTCTGCCACGCGAA
CCTCGATCTGTGCATGGAAACGGAGTGGTCCTTGTGGTGTTTTTACGGCG
GGATCCTCCTTGCCATGGTCTCCGTTGTCTTGCTGGTCAACTCGGTTGCC
CTACATCACAAGACTCTTCTGGACTGCGAGCGCCGACGAGACGCGGCTGC
TAAGGCACTCCGCGCGGCGAATCGCTCGAGACGCCGCCGCCAAGAGCTCT
GGGAGCAAGAAGTTTACGGCGGTGGGAGCTACATGGGCAGCAACTTCGGT
GCAGGGGAATCCAGCTGCCGAATGGGTGGCGGTCACGCCACCATCAAAAA
CATCAACAATCCCGCCGCACACCTTCCCGTCGACAGGCCGACTTCCCGTA
TTAGCGCCGTGGCCCCGTCGTTCGAAACGCAGACGCGCAGCTTCTCTCGC
AGGATTTCGCGGTCGATCCCCACCACGGTTGGTGTCGACTTCGACGGGAA
CAACACCCGTTCAGCCCCGCTCGACCCGCTCGATTCCAACAGCAACAACG
ATGATATTGAAATGAGCAGACTTGAATCCCCGACGTCTGCTCCGATGTCT
CAGAGCGGCCAAGACGAAGGTCGCGGCCTCGTAGGAGGCGAA
back to top