mRNA_H-canaliculatus_M_contigs8031.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8031.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8031.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8031.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8031contigH-canaliculatus_M_contigs8031:1617..2630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1014
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.7264314-UTR-H-canaliculatus_M_contigs8031:1616..17761696854131.7264314-UTR-H-canaliculatus_M_contigs8031:1616..1776Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8031 1617..1776 -
1696854131.7588553-UTR-H-canaliculatus_M_contigs8031:2325..26301696854131.7588553-UTR-H-canaliculatus_M_contigs8031:2325..2630Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8031 2326..2630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.7443442-CDS-H-canaliculatus_M_contigs8031:1776..23251696854131.7443442-CDS-H-canaliculatus_M_contigs8031:1776..2325Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8031 1777..2325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8031.2.1prot_H-canaliculatus_M_contigs8031.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8031 1777..2325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8031.2.1

>prot_H-canaliculatus_M_contigs8031.2.1 ID=prot_H-canaliculatus_M_contigs8031.2.1|Name=mRNA_H-canaliculatus_M_contigs8031.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=183bp
MVRGLGYLNVCVRTHKGCCDCDFMVAVRFLRGDMPLNREIEASRRTKRVH
FSFELLVSRCWCAHDETRKIDCLPHPIQEDFLVAKIKGRGEAHRLGIGDV
GETLQTVRNLQTLQALYVEKGRRSNLAGPASQKDGSRYQILHQDNSSKQS
FLKKKISACSLDNVRGMCSPHLLQRTVRLFLR*
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mRNA from alignment at H-canaliculatus_M_contigs8031:1617..2630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8031.2.1 ID=mRNA_H-canaliculatus_M_contigs8031.2.1|Name=mRNA_H-canaliculatus_M_contigs8031.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8031:1617..2630- (Hapterophycus canaliculatus Oshoro7m male)
CGCAAATCCTAGTTTCTTCGAGCGAAAAGCAGTTTGGATAGCGGTTCAGC
CGCCATTAATATTACCCGGAGGATGGAGGTTAAGGTACGGATAGGGTGCG
TGCCGCGTGCACGGTGACGAGAGGCCCGTGGAGGTTGGCCAAGAATTGTA
AGATATGTTTCTTAGATGCGTTTGCTTGCACCCGTGTAGCCGGAGGGAGA
ACCGGAGAGTGTTGGGGCCGATTGATAGTCGTGCTGCTGCCTTCGTTGCG
TGGCCCGTACACAGCGGTGCGCCTCTACACTGTTCACCTTTAGATTTGGG
TGATCATGGTACGAGGTCTTGGATATCTGAACGTGTGCGTACGTACGCAC
AAGGGATGCTGTGATTGCGACTTTATGGTAGCCGTGAGGTTCTTAAGGGG
GGACATGCCCTTGAACAGGGAAATCGAAGCTTCAAGGCGGACGAAACGTG
TACATTTCTCTTTCGAGTTGCTCGTCTCTCGTTGCTGGTGTGCGCACGAT
GAAACTCGAAAAATCGATTGCCTGCCCCACCCAATTCAAGAAGATTTTCT
GGTCGCAAAGATAAAAGGAAGAGGAGAAGCACACCGCTTGGGGATAGGAG
ACGTTGGCGAAACCCTCCAAACTGTTCGAAATCTTCAAACTCTTCAAGCT
TTGTACGTGGAGAAAGGAAGACGGAGCAACCTTGCGGGACCAGCATCGCA
GAAGGATGGTTCTCGGTACCAAATCCTACACCAAGACAACTCCAGCAAGC
AGTCGTTTCTGAAAAAAAAAATATCCGCATGCTCCCTAGATAATGTTCGA
GGAATGTGTTCTCCGCATCTACTTCAACGGACTGTCCGTTTGTTTCTCCG
GTGATCCTCCGACGCTACACGTAGACTAGACATCTGCGTTTTTTTTCACC
GCGCGATTTCGAGGTCGCGAACGGTACGAGCACCGCTCACGCCGAGCATC
CCCCTGAGGTAGAACATCCCCCCCCGCGCACCGAGCTTTGTTGGTGCATC
TTCTCTGCATTTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8031:1617..2630-

>mRNA_H-canaliculatus_M_contigs8031.2.1 ID=mRNA_H-canaliculatus_M_contigs8031.2.1|Name=mRNA_H-canaliculatus_M_contigs8031.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=549bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8031:1617..2630- (Hapterophycus canaliculatus Oshoro7m male)
ATGGTACGAGGTCTTGGATATCTGAACGTGTGCGTACGTACGCACAAGGG
ATGCTGTGATTGCGACTTTATGGTAGCCGTGAGGTTCTTAAGGGGGGACA
TGCCCTTGAACAGGGAAATCGAAGCTTCAAGGCGGACGAAACGTGTACAT
TTCTCTTTCGAGTTGCTCGTCTCTCGTTGCTGGTGTGCGCACGATGAAAC
TCGAAAAATCGATTGCCTGCCCCACCCAATTCAAGAAGATTTTCTGGTCG
CAAAGATAAAAGGAAGAGGAGAAGCACACCGCTTGGGGATAGGAGACGTT
GGCGAAACCCTCCAAACTGTTCGAAATCTTCAAACTCTTCAAGCTTTGTA
CGTGGAGAAAGGAAGACGGAGCAACCTTGCGGGACCAGCATCGCAGAAGG
ATGGTTCTCGGTACCAAATCCTACACCAAGACAACTCCAGCAAGCAGTCG
TTTCTGAAAAAAAAAATATCCGCATGCTCCCTAGATAATGTTCGAGGAAT
GTGTTCTCCGCATCTACTTCAACGGACTGTCCGTTTGTTTCTCCGGTGA
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