mRNA_H-canaliculatus_M_contigs8028.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8028.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8028.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8028.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV0_ECTSI)

HSP 1 Score: 448 bits (1152), Expect = 5.400e-143
Identity = 274/424 (64.62%), Postives = 314/424 (74.06%), Query Frame = 1 
Query:    1 SSSMGDLSTPAWVAKVREEIGRSPAWEVLSDQVYARVSTILKSHGLGHFSDLSSPEQITLLEEAHRDIMSEDNKVYQAFESQFSKSMDAEIAKEARARVDKHEAAKHGHTDEALYLDSILDSAAQGAVSLVKELPREHLGSLRLMLNQAIPSRTRLDIWRLLLKHTAVREEYELLMKQNRNSTISGQDIYITHRCQALLESGSVAARRLLPLTSRNVVLMKTVLSYHHACKMNRRGEKATIDVPDSFLHFMVPLCAVATRGAAFPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXREQKIEVMIEDIVEMFEAALEAGLEGLVNPQELGSSSSGKIGVAGSGGAG--PTRAKKAAKELKTATVGAASRGRDXXXXXXXXXXXXXPAPPAWVDKIFGVLVPGFQGLVDHVTRVHLGLAVAASAAE 1266
            +SSMG + TPAWV  VREEIGRSPAWEVLSDQ++ RVST+LKSHGLGHFSDLSSPEQITLLEEAHRDIMSE+NKVYQAFESQFSKSMDAEIAKEARARV +   A    T+EA YLD ILDSAA+GAVSL++ELPREHLGSLRLMLNQA+PSR RLDIWRLLLKHTAV                             LLESGSVA+RR+LPL+SRNVVLMKTVLSYHHACKM +RG+KAT ++P+ F+HF+VPLCAV T  +++    XXXXXXXXXXXXXXX            REQ+I++MIE +VEMFE ALEAGLEGLV+ +EL     G  GV+GSG  G   TRAKK+A+  KTAT  A ++                   P WVDK +GVLVPGF+GL+DHVTRVHLGLAVAA  +E
Sbjct:   42 ASSMGAVGTPAWVVNVREEIGRSPAWEVLSDQLFERVSTVLKSHGLGHFSDLSSPEQITLLEEAHRDIMSENNKVYQAFESQFSKSMDAEIAKEARARVVQDSTANREGTEEAQYLDRILDSAAEGAVSLLRELPREHLGSLRLMLNQAVPSRARLDIWRLLLKHTAV-----------------------------LLESGSVASRRILPLSSRNVVLMKTVLSYHHACKMTKRGQKATTNIPEPFVHFLVPLCAVITGRSSYSXXXXXXXXXXXXXXXXXXSL----------REQEIDIMIERLVEMFEGALEAGLEGLVDQKEL----PGGTGVSGSGAGGVSTTRAKKSARSPKTATRAAETKENSGDGRGGADNIVL----PDWVDKSYGVLVPGFRGLLDHVTRVHLGLAVAAVPSE 418
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BLAST of mRNA_H-canaliculatus_M_contigs8028.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX11_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 8.910e-130
Identity = 257/422 (60.90%), Postives = 292/422 (69.19%), Query Frame = 1 
Query:    1 SSSMGDLSTPAWVAKVREEIGRSPAWEVLSDQVYARVSTILKSHGLGHFSDLSSPEQITLLEEAHRDIMSEDNKVYQAFESQFSKSMDAEIAKEARARVDKHEAAKHGHTDEALYLDSILDSAAQGAVSLVKELPREHLGSLRLMLNQAIPSRTRLDIWRLLLKHTAVREEYELLMKQNRNSTISGQDIYITHRCQALLESGSVAARRLLPLTSRNVVLMKTVLSYHHACKMNRRGEKATIDVPDSFLHFMVPLCAVATRGAAFPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXREQKIEVMIEDIVEMFEAALEAGLEGLVNPQELGSSSSGKIGVAGSGGAGPTRAKKAAKELKTATVGAASRGRDXXXXXXXXXXXXXPAPPAWVDKIFGVLVPGFQGLVDHVTRVHLGLAVAASAAE 1266
            +S MG + TPAWV  VREEIGRSPAWEVLSDQ++ RVST+LKSHGLGHFSDLSSPEQITLLEEAHRDIMSE+NKVYQAFESQFSKSMDAEIAKEARARV +  AA    T+EA YLD ILDSAA+GAVSL++ELPREHLGSLRLMLNQA+PS+ RLDIWRLLLKHTAV                             LLESGSVA+RR+LPL+SRNVVLMKTVLSYHHACKM +RG+KAT ++P+SFLHF+VPLCAV T  +      XXXXXXXXXXXXXXX            REQ+I+VMIE +VEMFE ALEAGLEGLV+P+EL   +                                    D                P WV+K +GVLVPGF+GL+DHV RVHLGL VAA+ +E
Sbjct:  114 ASGMGAVGTPAWVVNVREEIGRSPAWEVLSDQLFERVSTVLKSHGLGHFSDLSSPEQITLLEEAHRDIMSENNKVYQAFESQFSKSMDAEIAKEARARVVQDSAANREGTEEAQYLDHILDSAAEGAVSLLRELPREHLGSLRLMLNQAVPSKARLDIWRLLLKHTAV-----------------------------LLESGSVASRRILPLSSRNVVLMKTVLSYHHACKMTKRGQKATANIPESFLHFLVPLCAVITTKSXXXXXXXXXXXXXXXXXXXXXSL----------REQEIDVMIERLVEMFEGALEAGLEGLVDPKELSGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETKENSGDGRGGADNIVL------PDWVNKSYGVLVPGFRGLLDHVARVHLGLTVAAAPSE 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8028.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.400e-14364.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.910e-13060.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8028contigH-canaliculatus_M_contigs8028:1622..4940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008877317.1
Model size1539
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.48e-20
EggNOG OGs2CN9E@1|root,2QUN2@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002240.1
Cds size1530
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8028.1.1prot_H-canaliculatus_M_contigs8028.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8028 1631..4940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.4329298-UTR-H-canaliculatus_M_contigs8028:1621..16301696854131.4329298-UTR-H-canaliculatus_M_contigs8028:1621..1630Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8028 1622..1630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.4452877-CDS-H-canaliculatus_M_contigs8028:1630..17021696854131.4452877-CDS-H-canaliculatus_M_contigs8028:1630..1702Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8028 1631..1702 +
1696854131.4567797-CDS-H-canaliculatus_M_contigs8028:2003..21441696854131.4567797-CDS-H-canaliculatus_M_contigs8028:2003..2144Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8028 2004..2144 +
1696854131.4686377-CDS-H-canaliculatus_M_contigs8028:2568..26331696854131.4686377-CDS-H-canaliculatus_M_contigs8028:2568..2633Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8028 2569..2633 +
1696854131.4817224-CDS-H-canaliculatus_M_contigs8028:3068..32821696854131.4817224-CDS-H-canaliculatus_M_contigs8028:3068..3282Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8028 3069..3282 +
1696854131.4920752-CDS-H-canaliculatus_M_contigs8028:3724..38111696854131.4920752-CDS-H-canaliculatus_M_contigs8028:3724..3811Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8028 3725..3811 +
1696854131.502213-CDS-H-canaliculatus_M_contigs8028:3989..49401696854131.502213-CDS-H-canaliculatus_M_contigs8028:3989..4940Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8028 3990..4940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8028.1.1

>prot_H-canaliculatus_M_contigs8028.1.1 ID=prot_H-canaliculatus_M_contigs8028.1.1|Name=mRNA_H-canaliculatus_M_contigs8028.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=510bp
MGDLSTPAWVAKVREEIGRSPAWEVLSDQVYARVSTILKSHGLGHFSDLS
SPEQITLLEEAHRDIMSEDNKVYQAFESQFSKSMDAEIAKEARARVDKHE
AAKHGHTDEALYLDSILDSAAQGAVSLVKELPREHLGSLRLMLNQAIPSR
TRLDIWRLLLKHTAVREEYELLMKQNRNSTISGQDIYITHRCQALLESGS
VAARRLLPLTSRNVVLMKTVLSYHHACKMNRRGEKATIDVPDSFLHFMVP
LCAVATRGAAFPSSSSSFPSSSHNAASAAGAAVAAAATSSSRREQKIEVM
IEDIVEMFEAALEAGLEGLVNPQELGSSSSGKIGVAGSGGAGPTRAKKAA
KELKTATVGAASRGRDGGGVGGGDGDEDDPAPPAWVDKIFGVLVPGFQGL
VDHVTRVHLGLAVAASAAEADGVEDRMEESGSDDRTRTDARAPALERAQQ
QHVGDEQQQHPPQPQEKDQQEGDNTADTQERRRVSSTSRREALPSQTPST
TAGNDTGSGS
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mRNA from alignment at H-canaliculatus_M_contigs8028:1622..4940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8028.1.1 ID=mRNA_H-canaliculatus_M_contigs8028.1.1|Name=mRNA_H-canaliculatus_M_contigs8028.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3319bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8028:1622..4940+ (Hapterophycus canaliculatus Oshoro7m male)
TCCTCTAGTATGGGAGATCTCAGCACGCCAGCTTGGGTTGCCAAAGTCAG
AGAAGAAATAGGCCGTTCGCCGGCGTGGGAGGTAGGCGCAGCAGGGCCGT
ACAAGGAGTCTACTGCTGAGGGATTTTGTTGGATATTTGGATATTTGGAA
CTCGCACAAAAAGATCGGACTCCGAACGAAAGAGGGCACGTGCGTATGCT
TACCTCCGTCGCGTGTTAGGAGGGACTCATTGTTTGAGGAATGGGCTTGC
AGTCATTTTTTGAAGCTCGTGTCCGGCATTCCGCGTAAAAGGTTCGTTAA
CATTATGTGAACATACTTGTAGCCTACGCCGTTTCCGATGAAGCGTTGCA
TCTTCCGACGGACCGTGCCGAACTTGACACAGGTTCTATCCGATCAGGTG
TACGCGCGGGTGTCCACTATACTCAAGTCCCATGGCCTGGGACACTTTTC
TGACCTGTCGTCTCCGGAGCAGATCACGTTGCTGGAAGAAGCTCATCGGG
ACATCATGTCCGAGGATAACAAGGTCAGATGTGGCTGTCGTGTCTCGGGC
CTACGGTCCATCGTCGGCCATACAGGATGCCAAGTCACGCTACAACCGCG
AACAATCCATGATTCGACGCCATACGTACTGCCAACATCGAAATGTAATT
CGAAAGACGCTTGGATTTGTGCGCATTGTTTGTGGGACATACCAGCTTAG
GCGAGGACACCATGCGGAGGGCATCTTGACATGTTTGTCAAAGCCCTCTA
TCTCGGCGGCGTTCACCGATGCGATCCTGTGCTTTCGGCCCTACGGTGAA
CCCGCCCATCCTCGGATGTGGCAGGCTAAAAGGGAGCCACACGTCCCACC
GCCCACGCCCAAGCTCAGGTTGACAGCCTTTGGCAGATGCCCTCTTTCAT
TTTCTGGCTTAGGATTCGCTGTGCCCCTTCACCAAAACGCTCACCAGGTG
TACCAGGCGTTCGAGTCCCAGTTCAGCAAGTCCATGGACGCGGAGATCGC
GAAGGAAGCGAGGTGAGACCAGAGAGAAAGTGATGCAAAGAGCAGAGTTG
AGCGACTACCAGGAGTTTCGCTCGCGGTAAAAAGGAAAAAACAGCTCGAC
TCAAGCCCGGGATGCATTGGGGCTGTGGTTTATCGCCGGTGCCTATTTTC
GGCCGAGTGCTTCCTATAATGTATTGGTGGAGGGATAAGTTTCGTCGTAC
ACCCTCGTTGAAGTTTTATCAGGTATTGGCACGGGCGTCAGAACCGTGCC
ACCCTCTTTGATCGGGTATTGAGGCGCACCGGGCCTCGCCGGTATGAACG
TGTTGGGCCCCCTTCGCCCTCAAGAGAAGGAAAATACACTGAGCCAAAGA
CGAAGGACCTGTTGGTGCTCACGAACGTGTGCGCTCATTTACGTTGCCAC
TCTCGGACGGCTCCTCCCTCCCAACGCTCGCCGTGACCGGCCCAAAGGGC
CAGGGTTGATAAGCACGAAGCAGCGAAGCACGGCCACACCGACGAAGCGC
TGTACCTAGACAGCATCCTAGATTCGGCTGCGCAAGGAGCAGTTTCCCTG
GTGAAGGAGTTACCCCGCGAACACCTGGGAAGCCTCCGCCTGATGCTGAA
CCAGGCGATACCGTCGAGGACCAGGCTGGATATCTGGCGGCTGCTCCTCA
AGCATACAGCGGTGAGCGCTCTAGGTCAGGAAGACACGCACCTCAGGTGC
TGTATGTGACTGGGGTAACATCTGAAACGGCTCATGCTGCCAGGGCGTGC
GTCGAAGGTTGCAGACGCTAGCCAAGGGATGCGCGGCGAGCAGGCTAGGG
CCTGCAGAGTCCCTCTTCGTAGACATTCACAGTCCCCCGTACATGTTCAC
TGACTTTTTTTCGTATACGTAGATGAGTCGATTCGCGTCTTGACTGCGTG
GATGTCGTCCGGTGCAGCGTGGGGTGCGAAGAGGTGGAAACGAACGGGCT
TTTGCTTTCATGGGTTGTGACCCCCGACTTGGGTCATTCCCGCGATAGGG
CTTTTACTAGACTGGCCCTCCGCGAGTGTCCGTGATTTCTTGCGCTCGAC
GACTCCTTACACCTGCGTGCTTCGACTCGTGCCGTTCTTGGAAAAAAAAA
CAGGTGCGGGAAGAGTACGAACTGCTGATGAAACAGAACCGAAACAGCAC
CATTTCGGGGCAGGACATCTACATCACTCACCGCTGTCAGGTGTGCAGCA
GCGCAGAGATCCTGCACGGGTCACCTGCCTCGGTGTATCTCGTATTTCTT
TGCGTAGCACTCCCTCTCTTGCGGTAGACGTCTACAGCGTTCGCCAACGC
TCCTACAGGTCCAGACTCCTGCGCCCCCTATGCCCCTCCCCCCCTCCACC
CCGGGCGCGAAAATCCAGGCCCTTCTCGAATCCGGGAGCGTCGCCGCTCG
CCGCCTGCTGCCCCTCACGAGCCGTAACGTGGTGCTCATGAAGACGGTCC
TGAGTTACCACCACGCGTGCAAGATGAATAGGAGGGGAGAGAAGGCCACC
ATCGACGTCCCCGACTCCTTCTTGCACTTTATGGTGCCTCTGTGCGCGGT
CGCCACCAGGGGTGCCGCGTTTCCCTCGTCCTCTTCCTCTTTTCCCTCCA
GCAGTCACAATGCGGCCTCCGCAGCGGGAGCGGCAGTAGCAGCGGCGGCG
ACGTCCTCGAGTCGCCGAGAGCAGAAGATAGAGGTGATGATCGAAGACAT
CGTGGAGATGTTCGAGGCCGCTCTAGAGGCGGGTTTGGAGGGCTTGGTAA
ACCCCCAAGAGCTAGGGAGCAGCAGCAGCGGCAAGATCGGTGTGGCGGGG
AGCGGCGGCGCCGGACCAACTCGAGCTAAGAAGGCGGCGAAAGAGCTCAA
GACGGCTACAGTTGGCGCAGCGTCGAGAGGCCGAGACGGTGGTGGCGTTG
GTGGTGGTGATGGCGATGAGGACGACCCAGCTCCTCCTGCCTGGGTCGAC
AAGATCTTCGGTGTGCTCGTCCCGGGGTTTCAGGGGCTAGTGGATCACGT
CACTCGCGTCCATCTGGGACTCGCCGTGGCCGCCTCCGCCGCCGAGGCGG
ACGGAGTCGAAGACCGAATGGAGGAAAGCGGTAGCGATGACCGCACACGC
ACAGATGCTCGCGCTCCCGCGCTTGAAAGGGCGCAACAACAACACGTGGG
TGACGAGCAGCAGCAGCATCCGCCACAGCCGCAAGAGAAGGACCAGCAAG
AAGGCGACAACACTGCAGATACGCAAGAGCGCAGGCGGGTTAGCTCAACG
AGCCGCCGAGAGGCGCTGCCATCGCAGACTCCATCCACAACCGCCGGGAA
CGACACCGGCAGCGGGAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8028:1622..4940+

>mRNA_H-canaliculatus_M_contigs8028.1.1 ID=mRNA_H-canaliculatus_M_contigs8028.1.1|Name=mRNA_H-canaliculatus_M_contigs8028.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1530bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8028:1622..4940+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGGAGATCTCAGCACGCCAGCTTGGGTTGCCAAAGTCAGAGAAGAAAT
AGGCCGTTCGCCGGCGTGGGAGGTTCTATCCGATCAGGTGTACGCGCGGG
TGTCCACTATACTCAAGTCCCATGGCCTGGGACACTTTTCTGACCTGTCG
TCTCCGGAGCAGATCACGTTGCTGGAAGAAGCTCATCGGGACATCATGTC
CGAGGATAACAAGGTGTACCAGGCGTTCGAGTCCCAGTTCAGCAAGTCCA
TGGACGCGGAGATCGCGAAGGAAGCGAGGGCCAGGGTTGATAAGCACGAA
GCAGCGAAGCACGGCCACACCGACGAAGCGCTGTACCTAGACAGCATCCT
AGATTCGGCTGCGCAAGGAGCAGTTTCCCTGGTGAAGGAGTTACCCCGCG
AACACCTGGGAAGCCTCCGCCTGATGCTGAACCAGGCGATACCGTCGAGG
ACCAGGCTGGATATCTGGCGGCTGCTCCTCAAGCATACAGCGGTGCGGGA
AGAGTACGAACTGCTGATGAAACAGAACCGAAACAGCACCATTTCGGGGC
AGGACATCTACATCACTCACCGCTGTCAGGCCCTTCTCGAATCCGGGAGC
GTCGCCGCTCGCCGCCTGCTGCCCCTCACGAGCCGTAACGTGGTGCTCAT
GAAGACGGTCCTGAGTTACCACCACGCGTGCAAGATGAATAGGAGGGGAG
AGAAGGCCACCATCGACGTCCCCGACTCCTTCTTGCACTTTATGGTGCCT
CTGTGCGCGGTCGCCACCAGGGGTGCCGCGTTTCCCTCGTCCTCTTCCTC
TTTTCCCTCCAGCAGTCACAATGCGGCCTCCGCAGCGGGAGCGGCAGTAG
CAGCGGCGGCGACGTCCTCGAGTCGCCGAGAGCAGAAGATAGAGGTGATG
ATCGAAGACATCGTGGAGATGTTCGAGGCCGCTCTAGAGGCGGGTTTGGA
GGGCTTGGTAAACCCCCAAGAGCTAGGGAGCAGCAGCAGCGGCAAGATCG
GTGTGGCGGGGAGCGGCGGCGCCGGACCAACTCGAGCTAAGAAGGCGGCG
AAAGAGCTCAAGACGGCTACAGTTGGCGCAGCGTCGAGAGGCCGAGACGG
TGGTGGCGTTGGTGGTGGTGATGGCGATGAGGACGACCCAGCTCCTCCTG
CCTGGGTCGACAAGATCTTCGGTGTGCTCGTCCCGGGGTTTCAGGGGCTA
GTGGATCACGTCACTCGCGTCCATCTGGGACTCGCCGTGGCCGCCTCCGC
CGCCGAGGCGGACGGAGTCGAAGACCGAATGGAGGAAAGCGGTAGCGATG
ACCGCACACGCACAGATGCTCGCGCTCCCGCGCTTGAAAGGGCGCAACAA
CAACACGTGGGTGACGAGCAGCAGCAGCATCCGCCACAGCCGCAAGAGAA
GGACCAGCAAGAAGGCGACAACACTGCAGATACGCAAGAGCGCAGGCGGG
TTAGCTCAACGAGCCGCCGAGAGGCGCTGCCATCGCAGACTCCATCCACA
ACCGCCGGGAACGACACCGGCAGCGGGAGT
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