mRNA_H-canaliculatus_M_contigs8026.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs8026.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs8026.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U1_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.760e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1

Query:   10 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:    1 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 64

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BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CAF2_9DINO)

HSP 1 Score: 121 bits (304), Expect = 1.570e-34
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1

Query:    4 ATMGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            A MGLAF +LW+R+ GKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN+SFT
Sbjct:   27 AVMGLAFGKLWDRLLGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLSFT 92

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BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: ADP-ribosylation (factor n=4 Tax=Eukaryota TaxID=2759 RepID=A0A6A7GAH9_9CRUS)

HSP 1 Score: 124 bits (311), Expect = 1.790e-34
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 1

Query:   10 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            MG+AFSRLW+R+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:    1 MGIAFSRLWQRIFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 64

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: ADP-ribosylation (factor n=39 Tax=Eukaryota TaxID=2759 RepID=B8BS84_THAPS)

HSP 1 Score: 122 bits (306), Expect = 8.650e-34
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1

Query:   10 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            MGL FSRL+ERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:    1 MGLTFSRLFERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 64

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BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: ADP-ribosylation (factor n=3 Tax=Stramenopiles TaxID=33634 RepID=A0A5D6YTC8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.170e-33
Identity = 60/64 (93.75%), Postives = 64/64 (100.00%), Query Frame = 1

Query:   10 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 64

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BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UPN3_OXYMA)

HSP 1 Score: 119 bits (297), Expect = 3.020e-33
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1

Query:    4 ATMGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            A MGLAFSRL+ R+F K+EMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:   24 AVMGLAFSRLFSRLFSKQEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 89

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: ADP-ribosylation (factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HYAAE)

HSP 1 Score: 120 bits (302), Expect = 3.300e-33
Identity = 60/64 (93.75%), Postives = 64/64 (100.00%), Query Frame = 1

Query:   10 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 64

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: ADP-ribosylation (factor n=30 Tax=Stramenopiles TaxID=33634 RepID=K3WYT4_GLOUD)

HSP 1 Score: 120 bits (302), Expect = 3.300e-33
Identity = 60/64 (93.75%), Postives = 64/64 (100.00%), Query Frame = 1

Query:   10 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            MG+AFSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 64

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: ADP-ribosylation (factor n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W572_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.510e-33
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1

Query:    7 TMGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
             MGL FSR+W+RMFG++EMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEY+NISFT
Sbjct:   14 AMGLTFSRIWDRMFGRREMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYRNISFT 78

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Match: ADP-ribosylation (factor n=23 Tax=Dinophyceae TaxID=2864 RepID=F8QQM6_AMPCA)

HSP 1 Score: 120 bits (301), Expect = 4.680e-33
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1

Query:   10 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 201
            MGLAF++LW+RM GK+EMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT
Sbjct:    1 MGLAFTKLWQRMIGKQEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFT 64

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs8026.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	2.760e-36	100.00	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Hypothetical	1.570e-34	89.39	protein (Fragment) n=1 Tax=Alexandrium andersonii ...	[more]
ADP-ribosylation	1.790e-34	95.31	factor n=4 Tax=Eukaryota TaxID=2759 RepID=A0A6A7GA...	[more]
ADP-ribosylation	8.650e-34	96.88	factor n=39 Tax=Eukaryota TaxID=2759 RepID=B8BS84_...	[more]
ADP-ribosylation	2.170e-33	93.75	factor n=3 Tax=Stramenopiles TaxID=33634 RepID=A0A...	[more]
Hypothetical	3.020e-33	90.91	protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2...	[more]
ADP-ribosylation	3.300e-33	93.75	factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HY...	[more]
ADP-ribosylation	3.300e-33	93.75	factor n=30 Tax=Stramenopiles TaxID=33634 RepID=K3...	[more]
ADP-ribosylation	3.510e-33	89.23	factor n=2 Tax=Rhizochromulina marina TaxID=103483...	[more]
ADP-ribosylation	4.680e-33	92.19	factor n=23 Tax=Dinophyceae TaxID=2864 RepID=F8QQM...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs8026	contig	H-canaliculatus_M_contigs8026:402..1502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D7FGX4
Preferred name	Arf1
PFAMs	Arf
Model size	201
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07937,ko:K07977
KEGG Pathway	ko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Hectar predicted targeting category	other localisation
Exons	2
Evalue	8.93e-37
EggNOG OGs	COG1100@1\|root,KOG0070@2759\|Eukaryota
Description	GTP binding
Cds size	192
COG category	BDLTU
BRITE	ko00000,ko00001,ko04031,ko04131,ko04147

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854131.2234483-UTR-H-canaliculatus_M_contigs8026:401..410	1696854131.2234483-UTR-H-canaliculatus_M_contigs8026:401..410	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs8026 402..410 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854131.2429857-CDS-H-canaliculatus_M_contigs8026:410..476	1696854131.2429857-CDS-H-canaliculatus_M_contigs8026:410..476	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs8026 411..476 +
1696854131.2606342-CDS-H-canaliculatus_M_contigs8026:1376..1502	1696854131.2606342-CDS-H-canaliculatus_M_contigs8026:1376..1502	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs8026 1377..1502 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs8026.1.1	prot_H-canaliculatus_M_contigs8026.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs8026 411..1502 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs8026:402..1502+
coding sequence from alignment at H-canaliculatus_M_contigs8026:402..1502+

protein sequence of mRNA_H-canaliculatus_M_contigs8026.1.1

>prot_H-canaliculatus_M_contigs8026.1.1 ID=prot_H-canaliculatus_M_contigs8026.1.1|Name=mRNA_H-canaliculatus_M_contigs8026.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp
MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG
FNVETVEYKNISFT

mRNA from alignment at H-canaliculatus_M_contigs8026:402..1502+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs8026.1.1 ID=mRNA_H-canaliculatus_M_contigs8026.1.1|Name=mRNA_H-canaliculatus_M_contigs8026.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8026:402..1502+ (Hapterophycus canaliculatus Oshoro7m male)
GGCGCAACCATGGGACTCGCATTTTCCCGACTGTGGGAGCGTATGTTCGG
GAAGAAGGAGATGCGTATACTGATGGTGAGCGGAATGTTCCATGTGCCCT
TGTCATACTTGAAACCTCACCGATTCGGTTTTTCCTGATATCCAAGCCAA
TCCGTCTCCAAGTGTACTCCTACTCTACAGGAGTTGAAAAGAGTTTCGTT
CTTTCTCCGCGCCACAGTTTGGCTTTATTGCCAAGTCTCATCCACCTCAG
ATGACTTGCTTGTCGAATTTTTGCCCCGAGTTTTTTTTCGAGCGTCAGGA
GGAGCACCCTAACTTTGCTACGCGAATGAGAAAAACGCATTTCAGAGATT
CGCAAACTAGATGGTCACAATACCACACACTTCGCAGAATTGGTACAAGT
AGTCGATTGGTTTGTTTTGAAGTTTCACTCGCACAACTATTACTTGTGTT
TCTTCTATTTGCTCCGCCCCCTCCCGAATTCTTGACGGCCCATACCTGTT
GTTCCTGATGGGCGTCGTCCCGACCCACAAGACGTCATTTTTCCACACCG
TACAATGTAGTTTGGATTTTCGTTTGGTTTGTCCTCATCATACCCACACT
CTTGCCAAATTTTTCAATGGTTTAAGAGAGTCGTATGTCCGTGGTCAACA
AATAACTTCAGAGCACATCTCATGTTCGAACACTGCGCCGTAATTATTTG
CGGAACTGAGACGGCGAGCTAGGCAAGGCAGCAGGTTCCGTATTTTTGCT
CCTGTGTTTTTCAACGTTTGCGTCAGTTTTTGTTGCGCCTACATTTTTTG
TTTGTTGACCTCTAGCTTCGCATCTCCCCTCGCAGTGAAGGCGCTCGTGT
TCTGGTCTCTCACCTCTCTCAAGCGCGCGTATTGACCCGCATGCCCGATG
AGCAGCAGTTTTTAGCATCGTGACTCCCTTCCAACAAGGCTGTGTTGATG
GTGGTTCCCTCGCGTAACACGAAAGGTGGGGTTGGACGCAGCCGGTAAGA
CGACCATCCTGTACAAGCTCAAGCTTGGAGAGGTGGTGACCACCATTCCC
ACCATCGGATTCAACGTGGAAACTGTAGAATACAAGAACATCAGCTTCAC
A

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8026:402..1502+

>mRNA_H-canaliculatus_M_contigs8026.1.1 ID=mRNA_H-canaliculatus_M_contigs8026.1.1|Name=mRNA_H-canaliculatus_M_contigs8026.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8026:402..1502+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGGACTCGCATTTTCCCGACTGTGGGAGCGTATGTTCGGGAAGAAGGA
GATGCGTATACTGATGGTGGGGTTGGACGCAGCCGGTAAGACGACCATCC
TGTACAAGCTCAAGCTTGGAGAGGTGGTGACCACCATTCCCACCATCGGA
TTCAACGTGGAAACTGTAGAATACAAGAACATCAGCTTCACA