mRNA_H-canaliculatus_M_contigs8022.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8022.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8022.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8022.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU3_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 3.140e-75
Identity = 174/330 (52.73%), Postives = 210/330 (63.64%), Query Frame = 1 
Query:    1 MTSITVPKTKTWRGSTASQRVEGVVIPVMPVAKPLQRRTAKK-----ARATGLLVDSVREVIQAFELEYAQVQEESVELKAVLDDRRMQLADLRRHLEKESSENGTLEAAVQHRISRNERGDARFREDLEAKFDRVVEDEGLIESRADGTESDLAVFEEEHRRVREKVRXXXXXXXXXXXXXXXXXXXXXXXXXKSARLVEVVRRGRLVVGERKAMLTSERERASESRVRGEEAAEEAAALEDQLSDLRRELARKEEESAEAARALVELEKHAEETQNRTTLDKSTREQYIRAAQDRLGELRRQLEAKKRAKEDLDGRMKSAKLALSAER 975
            M+SITVP TKTW  S AS RVE  V+PVMP A P+QRRTAKK     ARAT  LVDSVREV+QAFELEY+Q + ESVELKAVLDD R QL+DLRRHLEKESSENGTLEA VQHR +RN  GDAR RE LEA F +V+ DEG I S A   ESDL VF  EH+R+R+K                           +S RL   V  GR  V +R+ +L  E+ERAS SR    EAA++A ALE +++ LRR+LAR                KH  ET  R    K+TR + ++ AQDRL EL++Q+  K+RAK +LD R+K+ + AL AER
Sbjct:    1 MSSITVPTTKTWGRSAASSRVESAVVPVMPAATPIQRRTAKKSKNSNARATVHLVDSVREVVQAFELEYSQARAESVELKAVLDDHRTQLSDLRRHLEKESSENGTLEAVVQHRAARNTAGDARLRE-LEAAFKQVLADEGHIASSAAALESDLVVFTAEHKRIRDKTATAASWLDLAQAGLLQRERTLAAAQSESDRLTAAVEAGRRAVADREGLLRGEQERASRSRALAGEAADDAKALESEVAGLRRDLARXXXXXXXXXXXXXXXXKHTAETTVRIAKAKATRAEDLQDAQDRLAELKQQVATKERAKTELDERVKAGQEALVAER 329
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BLAST of mRNA_H-canaliculatus_M_contigs8022.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW75_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 9.080e-56
Identity = 159/338 (47.04%), Postives = 188/338 (55.62%), Query Frame = 1 
Query:    1 MTSITVPKTKTWRGSTASQRVEGVVIPVMPVAKPLQRRTAKK-----ARATGLLVDSVREVIQAFELEYAQVQEESVELKAVLDDRRMQLADLRRHLEKESSENGTLEAAVQHRISRNERGDARFREDLEAKFDRVVEDEGLIESRADGTESDLAVFEEEHRRVREKVRXXXXXXXXXXXXXXXXXXXXXXXXXKSARLVEVVRRGRLVVGERKAMLTSERERASESRVRGEEAAEEAAALEDQLSDLRRELARKEEESAEAARALVELEKHAEETQNRTTLDKSTREQYIRAAQDRLGELRRQLEAKKRAKEDLDGRMKSAKLALSAERASQDAKRA 999
            M+SITVPKTKTW     S RVE  V+PVMP A P+QRRTAKK     ARAT  LVDS R               ESVELKAVLDD R QL+DLRRHLEKESSENGTLEA VQHR +RN  GDA  RE LEA F +V+ DEG I SRA   ESDL VF  EH+ +R K                           +S RL   V  GR  V +R+A+L  E+ER+S SR    EAA+EA ALE +++ LRR+LARKEEE       L  ++KH  E                             +  K+RAK +LD R+++A+ AL AER  Q AKRA
Sbjct:    1 MSSITVPKTKTWG---ISSRVESAVVPVMPAATPIQRRTAKKSKISNARATVHLVDSARA--------------ESVELKAVLDDHRTQLSDLRRHLEKESSENGTLEAVVQHRAARNAAGDASLRE-LEAMFKQVLADEGHIASRAAALESDLVVFTAEHKCIRNKTATAASWLDLAQAGLLQRERAIAEAQSESDRLTAAVEAGRRTVADREALLRGEQERSSRSRALAGEAADEAKALESEVAGLRRDLARKEEEGXXXXDTLAAIKKHTAE-----------------------------VATKERAKTELDERVQAAQEALVAERVDQKAKRA 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8022.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.140e-7552.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.080e-5647.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8022contigH-canaliculatus_M_contigs8022:540..4684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1053
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_003350.1
Cds size1053
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854131.1547449-CDS-H-canaliculatus_M_contigs8022:539..7821696854131.1547449-CDS-H-canaliculatus_M_contigs8022:539..782Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8022 540..782 -
1696854131.1675763-CDS-H-canaliculatus_M_contigs8022:1724..18951696854131.1675763-CDS-H-canaliculatus_M_contigs8022:1724..1895Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8022 1725..1895 -
1696854131.1791322-CDS-H-canaliculatus_M_contigs8022:2919..33601696854131.1791322-CDS-H-canaliculatus_M_contigs8022:2919..3360Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8022 2920..3360 -
1696854131.1927395-CDS-H-canaliculatus_M_contigs8022:4486..46841696854131.1927395-CDS-H-canaliculatus_M_contigs8022:4486..4684Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8022 4487..4684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8022.1.1prot_H-canaliculatus_M_contigs8022.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8022 540..4684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8022.1.1

>prot_H-canaliculatus_M_contigs8022.1.1 ID=prot_H-canaliculatus_M_contigs8022.1.1|Name=mRNA_H-canaliculatus_M_contigs8022.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=351bp
MTSITVPKTKTWRGSTASQRVEGVVIPVMPVAKPLQRRTAKKARATGLLV
DSVREVIQAFELEYAQVQEESVELKAVLDDRRMQLADLRRHLEKESSENG
TLEAAVQHRISRNERGDARFREDLEAKFDRVVEDEGLIESRADGTESDLA
VFEEEHRRVREKVRRAASWLNRAAANLEERERSLAEGERKSARLVEVVRR
GRLVVGERKAMLTSERERASESRVRGEEAAEEAAALEDQLSDLRRELARK
EEESAEAARALVELEKHAEETQNRTTLDKSTREQYIRAAQDRLGELRRQL
EAKKRAKEDLDGRMKSAKLALSAERASQDAKRAETAALRARRKASVAELR
*
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mRNA from alignment at H-canaliculatus_M_contigs8022:540..4684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8022.1.1 ID=mRNA_H-canaliculatus_M_contigs8022.1.1|Name=mRNA_H-canaliculatus_M_contigs8022.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4145bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8022:540..4684- (Hapterophycus canaliculatus Oshoro7m male)
ATGACGTCCATCACCGTGCCCAAGACGAAAACGTGGAGGGGGTCGACAGC
GTCGCAACGTGTGGAGGGCGTTGTCATCCCCGTCATGCCCGTAGCGAAGC
CGCTCCAGAGGCGCACGGCCAAGAAGGCTCGTGCCACGGGTCTCCTCGTG
GATAGCGTGAGAGAAGTCATCCAGGCTTTCGAGCTCGAGTATGCTCAGGT
ATGATGCAATTGATAACATAGGTTGGATTCCACTAATACCAAGCGTTTTC
AACAATGGGACTGCGTTTGTTGATTGTGGTCGAACATTAGCGGCAAGCCT
TCAAATCCGATTGACATCAACGTCGAGTCAGACCCACAGTAATGAATCAG
TAGGAGGCGCATAAAAAGCGTAGGTGTAGCAGTGTAGAGGTGCAGCAGAT
GGTGTTGGCGCCTGCCTTTGGCCTCAAGGCCTTTGATTGTAGTACGCATG
CACGGGAGGGTTTAACTTCATGGATGCATGCTGACATTAGACAACTACGT
CTTGTTTTGTTGTCTCCCCTTCAAGAACATGTGTACTATCTATACACCAG
CGGTAATGCAGTAGCAATGTTCAGTACCATGTAAAAATCGTGCATCGCTG
GACCACTTGCACGATTCAAACAGGGAACGCAGAAACATGATGCCTTCGTT
GGCCAATAAACTTGCCAGCTTCATAACTTGGACGCCGAGCAGCACTTGCG
CAAGGGTTGGCCATGCTCCGTCGGCTTCTTGGCCTCACCCTCATGGCGCG
TGTTTCACTTCCATTCGGCGTGTTGGGGGCCAGGAAAAGAGCCCCCCCGT
CATGATCTATGAGATGCTTGCAGCATAACTGGGTGGAGAAAGTCTAAGGA
AACCCGCACCTTTCAACCTTCGGGCTCGCCGATAGCTCTCCATTTCGCAG
AACGCGCCTATGCGGGGCTTCAAGGAGGCTTGCTTGTGATCGCTCGAGAC
GTACAGCGTGCTTGCTGCAGGACTTACCCCGAAGTGTTTGAGCTCTCGTT
GTAGATTAATGCACCTGATCTCTGCGGCACACTTGCAGTTTACGTACCAG
AAATGCAGCCATTATTTATGTCGCGGCTGGCAACCAAAGCTCTCCCTTTG
CCTCCAAGTGGAGCAGCTTTCTCCTCAAATGTACCGAGTGCTCGCCGAGG
GTTGTCTGCCCTGCAGCGCAGTGTCTGCTGCTCGGCCGCCGAAGATGCGT
CACTTTGCCCATAACAACCACCTGGAACAAACGCCAACCACGCTCGATAT
CCTCCAAACAAACTGGCGATGCTGGCCGTAAGCGATAACAACAACAACAA
CAACAACAACAACAACAACAAAAGGTCCAGGAAGAGTCGGTGGAGCTCAA
GGCAGTACTCGACGACCGCCGCATGCAGCTGGCCGACCTCCGGCGGCACC
TCGAGAAGGAGTCCAGCGAGAACGGCACCCTGGAGGCGGCCGTCCAGCAC
CGCATCTCCAGGAACGAGCGGGGCGACGCCCGCTTCCGCGAGGACCTGGA
GGCCAAGTTCGACCGCGTCGTGGAGGACGAGGGCCTCATCGAATCTCGTG
CCGACGGCACGGAGTCTGACCTGGCCGTGTTCGAGGAGGAGCACCGGCGC
GTCCGGGAGAAGGTCCGCCGCGCCGCCTCCTGGCTCAACCGTGCGGCGGC
TAATCTGGAGGAGAGGGAGCGCTCACTCGCCGAGGGCGAGCGGAAGAGCG
CCAGGCTGGTCGAGGTCGTGCGGCGAGGCCGCCTGGTGGTCGGAGAGAGG
AAGGCTATGCTCACCGTAAGTGTCGGTGATGGTTGCTTTGGTTGAAAGAG
CACCGGCTAATGTGTCACGCGCCGGCGACATTAGAGAGCATCCATTCCCT
GGGCACTTTCGCGTCGATTGTTTTTGTTCGACCGCTCCTCCCGAAAGCAT
GACACGTCTTGGAAACACCAGTAATGAGGAGGTTTCTGTTGTGGATTAGG
TTTTGGACATCCTCAGTCGTGCACGTTCTGTCAGCGAGGGGGTGCTGGTT
AAGTGCCGACTGGGACGTAAAGTAGGCGCAACACTTCCTGCCGGGTATGA
TTTTGAGGAGGTGGCACAAGTCGAGGGGATGACCCTCGGGGGCAAGGATT
CCTTGCAACCGGACTCACCCGAGATGCTGTACAGGAGGATACATGATGCT
CGGCATTGCGTTGTGCTGAGAACAAGGTGTCACACCAAATGGCGGCGGCG
GTCAACAGGACGCGTGAAGGCCAAAATTAGAAAGGTGGTGCCTCCCTACT
GTCTGCCAAGGACGATCTCCTCTGTTCACAGATGAATCTATCCGAAAATC
GTGTGTCCCCGATAGAAGCCCGCCGTAGCGGGAGCGAAGAAATAATCGCA
AAGTATCCATGGTGGAATAGACGAAGAATTGTTCCACGCGGTTGAAGCAC
AGCACGCTGGGCTATCGGCCATGACTGTCCCTTAAGCCAGGATAGAAAGA
GCAAACACGAAACCACAAGTCGCGTTCGAAACCAATGGCGGCCCGGGAAG
CCCGCAGCAGCGGTAGCAACATGGAGGCACCCACGCCGAGACTCTCCGCG
AAGATTTCTCAGCAAAGACAAAAGACGTGAAAATCGCGGCGCACCTGGTA
GGAAGCGCGTGTGCAGAGGCAAGAGACGCCCCAGAGAGGAGAAGCTCCAG
CAATGTCGCACCACCTCACACGGGGCCACGAGACCCCATCGGCACGATGT
AGTGCATCCCGCACCGCGCGACCTCAGTGTCTCTCGAGCCTAACAACGTC
GTGACCGCGGGTGTGATGTCTTGTATCGCCGACGGGAAGAGCGAGCGGGA
GAGGGCCTCCGAGTCGCGGGTCCGGGGCGAGGAGGCGGCCGAAGAAGCGG
CGGCGCTTGAGGACCAGTTGTCAGATCTGCGGCGGGAGTTGGCCCGCAAA
GAAGAGGAGAGCGCAGAGGCTGCGAGGGCCCTCGTGGAGCTCGAGAAGCA
CGCGGAAGAGGTAGGCTCTCTACAAGGCGAGGCTTTGCGAGGAGCAACCT
TTTGAAAGAAAACAGAACAGCAGGCATTTGTTGATCTACCTGCTTGTGGG
AACTCGCTTGGGATGGAGCTCCTTGCGTCGTTTGTCCGGTCTCTTGAGAT
ATCCTTTCGTTGAAAAGGCGGGAGTGGGTAGCCACAACCGAACCAACGGT
GCTTCGGCATGGTGCCATCGTCAACTTCTAAGCTTTTCCTTGAGAGCGTG
TCGCTAACCCGAGCTGCTTATCCCATGTCCGTTTTCCATACAATTTTGGG
GTTCAGCTAAGAGTGCTGCCGTGTGTCAGGGGAGCAGAGGCGTCCATGGC
GAAAGGTAGCTGAACGACGGTGCGGGAGATGTATTGTAGCCAAACCAGCC
ACGAATCCCCCCGGCGATCACGATGGAGGAAAGAACACAGCGTGCAGAGT
TTGCAGCGTTTGCAGAGTTTGCAGGCTAGGTGCCCAGTTGTGTCTTCGTG
TGTCGTGCGGTGAGCACTTGCACAAGTGCACCAACAACGGAGAATCTGCA
ACAAATGAATCGGCGACGAAGTCGCCTCCTTCATGGCCCTCCTTCCTTCC
TCCGCCGAACGTTGTCGAGTTTGACAAAGACACGCACACGCACACATCTG
CCTCTTCTGCACGCGCCTCGCACTTTGTCCCCGCCGCCTCGCAAAAGGAC
ACATCCGGTATGCAGCATACAGCATGGGTCTAGATCTAAAGATCTGTAGA
CCTGCACCCTTTTTTTATCTACTCGTCCAGAGTAACAACAACCACCACCC
CCCCCCCCTCCCCGCCCCCGCCCCCCCCCCCACCACCACAACAACAACGA
CAGCAATAATAACAACAGCAGTAGCAACAACAGCAACAACAACAACAACA
ACAACAACAACAACAGCAGCAGCAATAGCAATAACAACAACACCGCACAC
AGACCCAAAACAGGACAACTCTCGACAAGTCCACCCGAGAGCAATACATA
CGCGCCGCGCAAGATCGCCTCGGCGAGCTGCGGCGCCAGCTGGAGGCCAA
GAAGAGGGCCAAGGAGGACCTCGACGGCCGGATGAAATCCGCGAAGCTGG
CGCTCAGCGCGGAGAGGGCGAGCCAAGACGCCAAGCGAGCGGAGACTGCT
GCCCTGAGGGCCCGTCGAAAGGCGAGTGTCGCGGAGCTCCGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8022:540..4684-

>mRNA_H-canaliculatus_M_contigs8022.1.1 ID=mRNA_H-canaliculatus_M_contigs8022.1.1|Name=mRNA_H-canaliculatus_M_contigs8022.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1053bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8022:540..4684- (Hapterophycus canaliculatus Oshoro7m male)
ATGACGTCCATCACCGTGCCCAAGACGAAAACGTGGAGGGGGTCGACAGC
GTCGCAACGTGTGGAGGGCGTTGTCATCCCCGTCATGCCCGTAGCGAAGC
CGCTCCAGAGGCGCACGGCCAAGAAGGCTCGTGCCACGGGTCTCCTCGTG
GATAGCGTGAGAGAAGTCATCCAGGCTTTCGAGCTCGAGTATGCTCAGGT
CCAGGAAGAGTCGGTGGAGCTCAAGGCAGTACTCGACGACCGCCGCATGC
AGCTGGCCGACCTCCGGCGGCACCTCGAGAAGGAGTCCAGCGAGAACGGC
ACCCTGGAGGCGGCCGTCCAGCACCGCATCTCCAGGAACGAGCGGGGCGA
CGCCCGCTTCCGCGAGGACCTGGAGGCCAAGTTCGACCGCGTCGTGGAGG
ACGAGGGCCTCATCGAATCTCGTGCCGACGGCACGGAGTCTGACCTGGCC
GTGTTCGAGGAGGAGCACCGGCGCGTCCGGGAGAAGGTCCGCCGCGCCGC
CTCCTGGCTCAACCGTGCGGCGGCTAATCTGGAGGAGAGGGAGCGCTCAC
TCGCCGAGGGCGAGCGGAAGAGCGCCAGGCTGGTCGAGGTCGTGCGGCGA
GGCCGCCTGGTGGTCGGAGAGAGGAAGGCTATGCTCACCAGCGAGCGGGA
GAGGGCCTCCGAGTCGCGGGTCCGGGGCGAGGAGGCGGCCGAAGAAGCGG
CGGCGCTTGAGGACCAGTTGTCAGATCTGCGGCGGGAGTTGGCCCGCAAA
GAAGAGGAGAGCGCAGAGGCTGCGAGGGCCCTCGTGGAGCTCGAGAAGCA
CGCGGAAGAGACCCAAAACAGGACAACTCTCGACAAGTCCACCCGAGAGC
AATACATACGCGCCGCGCAAGATCGCCTCGGCGAGCTGCGGCGCCAGCTG
GAGGCCAAGAAGAGGGCCAAGGAGGACCTCGACGGCCGGATGAAATCCGC
GAAGCTGGCGCTCAGCGCGGAGAGGGCGAGCCAAGACGCCAAGCGAGCGG
AGACTGCTGCCCTGAGGGCCCGTCGAAAGGCGAGTGTCGCGGAGCTCCGT
TGA
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