mRNA_H-canaliculatus_M_contigs8012.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8012.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8012.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8012.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.360e-5
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 2 
Query:  851 ADPNAQNKNGDIPLHAAAEFHTAFEVKVLVAAGAKVEAE*------------QGGTPFQSTCSARDCETLSALLKHVADINRPSDMGNTPLHLVESGYKDHDMAFALTNLILIAGADESARNNDGDTPA 1201
            AD  + ++ G   LH AA       V  LV  GA VEA              +G T           +T+ ALL+  A+ N P D G+ PLHLV    K   +A A  +L+L  GA+E+A +NDG+TPA
Sbjct:  273 ADVKSVDRLGHTALHWAAFDGIQEVVHALVEVGADVEARCLAQLLSEQRHSLKGSTSLHVAAYWETLDTMLALLQKGANANAPDDDGHGPLHLVCKYPKARSVAVA--DLLLRWGAEETATDNDGNTPA 399
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BLAST of mRNA_H-canaliculatus_M_contigs8012.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 6.000e-5
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 2 
Query:  860 NAQNKNGDIPLHAAAEFHTAFEV-KVLVAAGAKVEAE*QGG----TPFQSTCSARD-------CETLSALLKHVADINRPSDMGNTPLHLVESGYKDHDMAFALTNLILIAGADESARNNDGDTP 1198
            +A + +G   LH A     +  + + L+ AGA  +     G     P ++ C ++D       C+TL   + H AD+N     G+TPLH       D+  + A+  L+L AGADE+A N+DGDTP
Sbjct:  224 DAVDTDGTTALHLAVIMGRSLPIMETLLVAGADPDIRINTGGVQDCPLETACHSKDNIGTYHVCKTL---IDHGADVNSRCPFGSTPLHHA----CDYSQSDAVLRLLLQAGADENALNDDGDTP 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8012.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Ankyrin5.360e-535.66repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Ankyrin6.000e-532.80repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8012contigH-canaliculatus_M_contigs8012:2592..4064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTQ8
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,zf-C3HC4_3
Model size1473
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-23
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-28_003170.1
Descriptionspectrin binding
Cds size432
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.697361-UTR-H-canaliculatus_M_contigs8012:2591..30141696854130.697361-UTR-H-canaliculatus_M_contigs8012:2591..3014Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8012 2592..3014 +
1696854130.7220411-UTR-H-canaliculatus_M_contigs8012:3446..40641696854130.7220411-UTR-H-canaliculatus_M_contigs8012:3446..4064Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8012 3447..4064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.7116318-CDS-H-canaliculatus_M_contigs8012:3014..34461696854130.7116318-CDS-H-canaliculatus_M_contigs8012:3014..3446Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8012 3015..3446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8012.1.1prot_H-canaliculatus_M_contigs8012.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8012 3015..3446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8012.1.1

>prot_H-canaliculatus_M_contigs8012.1.1 ID=prot_H-canaliculatus_M_contigs8012.1.1|Name=mRNA_H-canaliculatus_M_contigs8012.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=144bp
METLLRSSADPSVQSWHNRTTLHRATEGTNDDVINLLVRAGVSVAPGPAV
FEGPLQIAVDGKAPKAVRTLIRHGAPLDWHEGGLETPLFSAVRQPLPSVV
AALPAAGSDPNLHVDEGTILYTLFSEEIGSRFREVFSEILRTR*
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mRNA from alignment at H-canaliculatus_M_contigs8012:2592..4064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8012.1.1 ID=mRNA_H-canaliculatus_M_contigs8012.1.1|Name=mRNA_H-canaliculatus_M_contigs8012.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8012:2592..4064+ (Hapterophycus canaliculatus Oshoro7m male)
GCTCTCCTGGCCGCCGGGGCAGACGTTTCCGTTCGGCTCGCCCACGTGCC
GGCCTACACCACGCTCGAAATGGCTGCTGCGGGAGGTCATGTCGAGGTGA
TGGAGTTCTCGGCTGAGGGCAGGCCCTCGGCGACGGCGGCTGGAGCCCCC
GGCGGGCGGACGCTTTAGCACGTCGCCGCTCTGGGGGGCCAGGCTGCCGA
TATCCGGTACCTCCTCCACGAGGTCGCGGCCGACATCGATGCGAAGGACA
GCTATGGTTACACACCCCTCCTTCTGGGTGCGAAAAAGTGCCGCGTGGCG
GCCGTTAAGGCTCTCTGTGCCGCAGGAGGCGACCACACCGTCGCGGTGAA
GACCTACCTCTGCTTCGAGCGCGACCACTTCGACGCGCTCGGTGTCGCCT
GCTTCTACAGAGATCTGATTGCCATGGAAACTCTGCTTCGCAGCAGCGCG
GACCCGAGCGTCCAGAGTTGGCATAATCGGACGACACTCCACAGAGCCAC
CGAGGGCACCAACGACGATGTCATCAACCTGCTGGTGAGGGCCGGTGTCT
CCGTCGCCCCTGGCCCGGCCGTCTTTGAGGGCCCCCTCCAAATCGCGGTT
GATGGAAAGGCCCCGAAAGCTGTCAGGACCCTTATTCGCCACGGAGCCCC
GCTTGATTGGCATGAGGGAGGCCTCGAGACGCCACTCTTCTCTGCTGTTC
GGCAGCCTCTACCGAGCGTGGTAGCAGCCCTACCCGCTGCGGGCTCGGAC
CCCAACCTACACGTTGACGAGGGAACGATACTCTACACCTTATTTTCGGA
AGAAATCGGTTCGAGATTCCGGGAGGTATTTTCAGAGATCTTGCGCACGC
GCTGATCCGAACGCCCAAAACAAGAACGGCGACATCCCGCTGCATGCCGC
GGCGGAGTTCCACACCGCCTTCGAGGTGAAAGTGCTGGTCGCAGCTGGGG
CCAAGGTGGAGGCCGAATGACAAGGGGGGACCCCATTTCAGTCCACTTGC
AGCGCGCGAGACTGCGAGACCCTATCCGCCCTGCTCAAGCACGTCGCAGA
TATCAACCGACCCAGCGATATGGGCAACACACCACTCCATCTGGTGGAAT
CGGGGTATAAAGACCACGACATGGCGTTCGCGTTGACGAACTTGATTTTA
ATCGCGGGAGCGGACGAATCGGCCCGGAATAACGACGGCGACACACCGGC
CTCTCCGTACGAACGAACGTCGATAGCCGTCGAGACCGGCTTCGCGAGCT
CTCGCGGCGAGCTCCTGCAGACAGGGCCGACAGGTCGTGGCGTCGCCGGG
GCATCTTTCTGCTGTGTCAGGCGAGGCTTGAGCCCGACGGGAGCCCCGCC
AAGGTGGCGGTGGTGGCAGAGGCGGGCGGCACAGATGCGGCAGGTTTCAG
GAGCGTGGGGACGAACTTGTTCGAGCTGCGCAAGGGGAAGGGTATGATCT
TCCGAGACATCATGTCCTACCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8012:2592..4064+

>mRNA_H-canaliculatus_M_contigs8012.1.1 ID=mRNA_H-canaliculatus_M_contigs8012.1.1|Name=mRNA_H-canaliculatus_M_contigs8012.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=432bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8012:2592..4064+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAAACTCTGCTTCGCAGCAGCGCGGACCCGAGCGTCCAGAGTTGGCA
TAATCGGACGACACTCCACAGAGCCACCGAGGGCACCAACGACGATGTCA
TCAACCTGCTGGTGAGGGCCGGTGTCTCCGTCGCCCCTGGCCCGGCCGTC
TTTGAGGGCCCCCTCCAAATCGCGGTTGATGGAAAGGCCCCGAAAGCTGT
CAGGACCCTTATTCGCCACGGAGCCCCGCTTGATTGGCATGAGGGAGGCC
TCGAGACGCCACTCTTCTCTGCTGTTCGGCAGCCTCTACCGAGCGTGGTA
GCAGCCCTACCCGCTGCGGGCTCGGACCCCAACCTACACGTTGACGAGGG
AACGATACTCTACACCTTATTTTCGGAAGAAATCGGTTCGAGATTCCGGG
AGGTATTTTCAGAGATCTTGCGCACGCGCTGA
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