mRNA_H-canaliculatus_M_contigs8002.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8002.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8002.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8002.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8002contigH-canaliculatus_M_contigs8002:3999..4879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size881
Hectar predicted targeting categoryother localisation
Exons1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.1177702-UTR-H-canaliculatus_M_contigs8002:3998..41371696854130.1177702-UTR-H-canaliculatus_M_contigs8002:3998..4137Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8002 3999..4137 -
1696854130.141168-UTR-H-canaliculatus_M_contigs8002:4599..48791696854130.141168-UTR-H-canaliculatus_M_contigs8002:4599..4879Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8002 4600..4879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.128595-CDS-H-canaliculatus_M_contigs8002:4137..45991696854130.128595-CDS-H-canaliculatus_M_contigs8002:4137..4599Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8002 4138..4599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8002.2.1prot_H-canaliculatus_M_contigs8002.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8002 4138..4599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8002.2.1

>prot_H-canaliculatus_M_contigs8002.2.1 ID=prot_H-canaliculatus_M_contigs8002.2.1|Name=mRNA_H-canaliculatus_M_contigs8002.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=154bp
MRFYSRLDFDVKRRSRSDSLDLQGSHRGWLGKEDALGVRSVLRSISTRDG
RLWIVCGVFSLDQWRCCVGSNPFHFDVFLHEYPQDVRANASTVDCRRKRY
PYFWQVVQEHGRFDILMRKGPSTIRRWSLEYTEKVYAIGRRLPRRLNCRC
IVI*
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mRNA from alignment at H-canaliculatus_M_contigs8002:3999..4879-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8002.2.1 ID=mRNA_H-canaliculatus_M_contigs8002.2.1|Name=mRNA_H-canaliculatus_M_contigs8002.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=881bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8002:3999..4879- (Hapterophycus canaliculatus Oshoro7m male)
TCGATAGACAGCAGGGGAAGGAATGACCTACGGGGCGGATTGAAACGTTC
ATTTGCCACGTGACTTTCCTGGCAAGCTATGCAAGCGCGCGTGTTACCTC
AAGCCGTGTGCACCGGGGGGGGTGGAATGCACTTCATGATATACATGTCA
TAAAAACCCACGTTCTATCGTTCCCTCGTCCATCTGGTACGGTTCAAGGT
AACCTAATATACTGTTTTTCATCGTTCTTAGATAGGTTTGTGTGACCCGT
ACGCTCGTAGAACATTGGTACGGCTTGGTGATGCGGTTTTATAGCAGGTT
AGACTTCGATGTCAAGCGCCGAAGTCGGTCTGATAGTCTAGACTTGCAGG
GTTCACACCGGGGGTGGCTGGGAAAGGAAGACGCGTTGGGTGTGCGTTCA
GTACTTCGAAGTATTTCGACCAGAGATGGGCGGTTGTGGATCGTGTGCGG
TGTGTTCTCCCTCGACCAGTGGCGTTGCTGCGTTGGTTCGAACCCGTTCC
ACTTTGATGTGTTTTTGCATGAATATCCGCAAGATGTGCGAGCAAACGCA
TCGACTGTAGACTGTAGACGGAAAAGGTACCCGTATTTCTGGCAAGTAGT
GCAGGAACATGGCAGATTCGACATATTGATGAGAAAAGGCCCGAGTACTA
TTCGGAGATGGAGCTTGGAATACACTGAAAAGGTGTACGCGATTGGAAGA
AGACTTCCGCGAAGATTAAATTGCCGCTGCATCGTGATTTAGCCGCAGTA
AGCGTCGTGATGGCGACCAACTCGCTGCTTCGCGCTCATGCGCCCATGCC
TCTCCACGCCCCAAAATATACGAGAGTGAAGAAGCAAAGTACGTGGCAAT
CGACGCCCCCACCGGCGTAGGCAAGACGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8002:3999..4879-

>mRNA_H-canaliculatus_M_contigs8002.2.1 ID=mRNA_H-canaliculatus_M_contigs8002.2.1|Name=mRNA_H-canaliculatus_M_contigs8002.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=462bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8002:3999..4879- (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGTTTTATAGCAGGTTAGACTTCGATGTCAAGCGCCGAAGTCGGTC
TGATAGTCTAGACTTGCAGGGTTCACACCGGGGGTGGCTGGGAAAGGAAG
ACGCGTTGGGTGTGCGTTCAGTACTTCGAAGTATTTCGACCAGAGATGGG
CGGTTGTGGATCGTGTGCGGTGTGTTCTCCCTCGACCAGTGGCGTTGCTG
CGTTGGTTCGAACCCGTTCCACTTTGATGTGTTTTTGCATGAATATCCGC
AAGATGTGCGAGCAAACGCATCGACTGTAGACTGTAGACGGAAAAGGTAC
CCGTATTTCTGGCAAGTAGTGCAGGAACATGGCAGATTCGACATATTGAT
GAGAAAAGGCCCGAGTACTATTCGGAGATGGAGCTTGGAATACACTGAAA
AGGTGTACGCGATTGGAAGAAGACTTCCGCGAAGATTAAATTGCCGCTGC
ATCGTGATTTAG
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