mRNA_H-canaliculatus_M_contigs7996.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7996.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7996.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Rab32C, (RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.780e-37
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    4 SPAGASPVIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNR 252
            S A  SPVIKILVVGDAGVGKTSVIQR+VNDEFS TH+PTIGVDFFIKEVAL   Q+ + PG+TVRVQLWDIAGQDRA K+NR
Sbjct:    3 SAAETSPVIKILVVGDAGVGKTSVIQRFVNDEFSPTHRPTIGVDFFIKEVALNGDQSESFPGTTVRVQLWDIAGQDRARKMNR 85
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Ras-related (protein Rab n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WGR3_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 2.760e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            VIK+LV+GDA  GKTS+I+RYV+D FS+ H+ TIGVDF +K V +         G+TVR+QLWDIAGQ+    +NRV
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVN--------GTTVRLQLWDIAGQEHFRALNRV 81
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Ras-related (protein Rab n=3 Tax=Peronosporaceae TaxID=4777 RepID=W2QJV6_PHYPN)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            VIK+LV+GDA  GKTS+I+RYV+D FS+ H+ TIGVDF +K V +         G+TVR+QLWDIAGQ+    +NRV
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVS--------GTTVRLQLWDIAGQEHFRALNRV 81
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Ras-related (protein Rab n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3HAQ4_PHYRM)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            VIK+LV+GDA  GKTS+I+RYV+D FS+ H+ TIGVDF +K V +         G+TVR+QLWDIAGQ+    +NRV
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVN--------GTTVRLQLWDIAGQEHFRALNRV 81
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4T0_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 8.020e-19
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            VIK+LV+GDA  GKTS+I+RYV+D F++ H+ TIGVDF +K V +         G+TVR+QLWDIAGQ+    +NRV
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFTEHHRTTIGVDFALKAVTVN--------GTTVRLQLWDIAGQEHFRALNRV 81
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Ras-related (protein Rab n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A3Y3_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 1.130e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            VIK+LV+GDA  GKTS+I+RYV D FS+ H+ TIGVDF +K V +         G+T+R+QLWDIAGQ+    +NRV
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVYDAFSEHHRTTIGVDFALKPVTVN--------GTTIRMQLWDIAGQEHFRALNRV 81
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: ras-related (protein Rab-7L1 n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI000775BB7F)

HSP 1 Score: 82.0 bits (201), Expect = 3.520e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            + K+L++GDA VGKTS++QRY ND F++ ++PTIGVDF +K V         S   TVR+QLWDIAGQ+R + + R+
Sbjct:    8 MFKVLIIGDATVGKTSLVQRYANDRFNKYYRPTIGVDFALKVVQW-------SESETVRLQLWDIAGQERFSSMTRL 77
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BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: t-SNARE (coiled-coil homology domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDP7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.760e-18
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            VIK+LV+GDA  GKTS+I+RYV+D FS+ H+ TIGVDF +K V +         G+TVR+QLWDIAGQ+    +NRV
Sbjct:   13 VIKVLVLGDAATGKTSIIKRYVHDAFSEHHRTTIGVDFALKAVTVS--------GTTVRLQLWDIAGQEHFRALNRV 81
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Ras-related (protein Rab n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YVF5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.100e-18
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            V+K+LV+GDA  GKTS+I+RYV++ FS  H+ TIGVDF +K V + N        +T+RVQLWDIAGQ+    +NRV
Sbjct:   12 VVKVLVLGDAATGKTSIIKRYVHNVFSDQHKTTIGVDFALKPVTVNN--------TTLRVQLWDIAGQEHFRALNRV 80
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Match: Ras-related (protein Rab n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485L2U4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.430e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:   25 VIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKEVALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV 255
            V+K+LV+GDA  GKTS+I+RYV++ FS+ H+ TIGVDF +K V ++N        +T+R+QLWDIAGQ+    +NRV
Sbjct:   14 VVKVLVLGDAATGKTSIIKRYVHNVFSEHHKTTIGVDFALKPVTVQN--------TTLRLQLWDIAGQEHFRALNRV 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7996.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rab32C,3.780e-3780.72RAB family GTPase n=1 Tax=Ectocarpus siliculosus T... [more]
Ras-related2.760e-1955.84protein Rab n=2 Tax=Pythiaceae TaxID=4782 RepID=K3... [more]
Ras-related2.870e-1955.84protein Rab n=3 Tax=Peronosporaceae TaxID=4777 Rep... [more]
Ras-related2.870e-1955.84protein Rab n=17 Tax=Peronosporaceae TaxID=4777 Re... [more]
Uncharacterized8.020e-1954.55protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Ras-related1.130e-1854.55protein Rab n=1 Tax=Plasmopara halstedii TaxID=478... [more]
ras-related3.520e-1850.65protein Rab-7L1 n=1 Tax=Protobothrops mucrosquamat... [more]
t-SNARE3.760e-1855.84coiled-coil homology domain-containing protein n=1... [more]
Ras-related4.100e-1853.25protein Rab n=3 Tax=Saprolegniaceae TaxID=4764 Rep... [more]
Ras-related4.430e-1851.95protein Rab n=2 Tax=Aphanomyces TaxID=100860 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7996contigH-canaliculatus_M_contigs7996:537..1243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FUI0
Preferred nameRAB32
PFAMsRas
Model size255
Max annot lvl2759|Eukaryota
KEGG koko:K07918,ko:K07923,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
Exons2
Evalue6.2e-38
EggNOG OGsKOG4423@1|root,KOG4423@2759|Eukaryota
DescriptionBLOC-2 complex binding
Cds size255
COG categoryE
BRITEko00000,ko04031,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.386887-CDS-H-canaliculatus_M_contigs7996:536..7081696854129.386887-CDS-H-canaliculatus_M_contigs7996:536..708Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7996 537..708 -
1696854129.40844-CDS-H-canaliculatus_M_contigs7996:1160..12431696854129.40844-CDS-H-canaliculatus_M_contigs7996:1160..1243Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7996 1161..1243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7996.1.1prot_H-canaliculatus_M_contigs7996.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7996 537..1243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7996.1.1

>prot_H-canaliculatus_M_contigs7996.1.1 ID=prot_H-canaliculatus_M_contigs7996.1.1|Name=mRNA_H-canaliculatus_M_contigs7996.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=85bp
MSPAGASPVIKILVVGDAGVGKTSVIQRYVNDEFSQTHQPTIGVDFFIKE
VALENGQTIASPGSTVRVQLWDIAGQDRANKVNRV
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mRNA from alignment at H-canaliculatus_M_contigs7996:537..1243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7996.1.1 ID=mRNA_H-canaliculatus_M_contigs7996.1.1|Name=mRNA_H-canaliculatus_M_contigs7996.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=707bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7996:537..1243- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCACCAGCCGGGGCGTCGCCCGTGATCAAAATCCTTGTCGTAGGGGA
TGCTGGTGTTGGGAAGACGAGCGTTATCCAGAGGTGAGTGAGATCTAAGG
CAAGGGTTGGTTTATTTGCTTTTATTACAGAGAGAGCGGGGTGACAGAGT
ACCCATTCGCGGCGACATTGCCAGGCTGGCCGTCTTGGGCAGGTGTACCA
GGTGGAAGGATTGGAAAAGGATGATCCCATGCCTCGCAAAACGTGTAAGA
TCATCTCTACGCTAGTGTGCAGAGTTCCGTGTACTAGATACATGATGGGC
ATTTCGGTCTGTGAATCTGTAGGAAATACTGCGTCATCAGTTCCTCGGGA
GCTCGGGCGTGAAGTACGTGAGGAGCTTCGGCAGCCTCGAGGTTCGTGGA
TTATGACAATTACTACTACTGTAGGATTGAGTCGGTACACAGGAGCACAT
AATGTTTGGAACGTTTGAACTCATCTCTCCTCGTGAACTTAGTCACGGTA
CATAAGCCCGCGTGCTCCTACTACTATCCCGACAGATACGTGAACGATGA
GTTCTCGCAGACCCACCAACCCACAATTGGGGTAGACTTCTTCATAAAGG
AGGTTGCTCTCGAAAACGGCCAGACCATAGCCTCTCCGGGCAGCACTGTG
CGTGTGCAGCTGTGGGATATCGCAGGGCAAGACCGTGCAAATAAAGTAAA
CAGAGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7996:537..1243-

>mRNA_H-canaliculatus_M_contigs7996.1.1 ID=mRNA_H-canaliculatus_M_contigs7996.1.1|Name=mRNA_H-canaliculatus_M_contigs7996.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=255bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7996:537..1243- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCACCAGCCGGGGCGTCGCCCGTGATCAAAATCCTTGTCGTAGGGGA
TGCTGGTGTTGGGAAGACGAGCGTTATCCAGAGATACGTGAACGATGAGT
TCTCGCAGACCCACCAACCCACAATTGGGGTAGACTTCTTCATAAAGGAG
GTTGCTCTCGAAAACGGCCAGACCATAGCCTCTCCGGGCAGCACTGTGCG
TGTGCAGCTGTGGGATATCGCAGGGCAAGACCGTGCAAATAAAGTAAACA
GAGTG
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