mRNA_H-canaliculatus_M_contigs7992.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7992.3.1
Unique NamemRNA_H-canaliculatus_M_contigs7992.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7992.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 7.280e-9
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   10 SIAQLKNHMFFEGIDWMRLSQRHVIPPYLPKV 105
            ++  LK+H +FEGIDW+RLSQRHV+PPYLPKV
Sbjct:  452 NLLALKSHEYFEGIDWLRLSQRHVLPPYLPKV 483
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BLAST of mRNA_H-canaliculatus_M_contigs7992.3.1 vs.
Match: Kinase-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.040e-6
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   13 IAQLKNHMFFEGIDWMRLSQRHVIPPYLPKVR 108
            +A+LK H FF GIDW+RLS RH+IPPY+P  +
Sbjct:  452 LAELKAHPFFNGIDWVRLSVRHMIPPYVPDAK 483
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BLAST of mRNA_H-canaliculatus_M_contigs7992.3.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQA3_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 5.990e-6
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   22 LKNHMFFEGIDWMRLSQRHVIPPYLP 99
            LKNH FF+GIDW  LSQ+HVIPPY P
Sbjct:   19 LKNHAFFQGIDWDLLSQKHVIPPYQP 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7992.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.280e-971.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Kinase-like2.040e-662.50domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical5.990e-676.92protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7992contigH-canaliculatus_M_contigs7992:4854..4979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LEF7
PFAMsPkinase,RGS
Model size126
Max annot lvl2759|Eukaryota
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.19e-09
EggNOG OGsKOG0603@1|root,KOG0603@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size126
COG categoryG
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.2572305-CDS-H-canaliculatus_M_contigs7992:4853..49791696854129.2572305-CDS-H-canaliculatus_M_contigs7992:4853..4979Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7992 4854..4979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7992.3.1prot_H-canaliculatus_M_contigs7992.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7992 4854..4979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7992.3.1

>prot_H-canaliculatus_M_contigs7992.3.1 ID=prot_H-canaliculatus_M_contigs7992.3.1|Name=mRNA_H-canaliculatus_M_contigs7992.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
PCISIAQLKNHMFFEGIDWMRLSQRHVIPPYLPKVRQETTN*
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mRNA from alignment at H-canaliculatus_M_contigs7992:4854..4979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7992.3.1 ID=mRNA_H-canaliculatus_M_contigs7992.3.1|Name=mRNA_H-canaliculatus_M_contigs7992.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7992:4854..4979- (Hapterophycus canaliculatus Oshoro7m male)
CCTTGCATCTCGATCGCACAGCTGAAGAACCACATGTTTTTTGAAGGGAT
CGACTGGATGCGGTTGAGTCAAAGGCACGTGATCCCGCCGTATCTCCCGA
AGGTCAGACAGGAGACAACGAACTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7992:4854..4979-

>mRNA_H-canaliculatus_M_contigs7992.3.1 ID=mRNA_H-canaliculatus_M_contigs7992.3.1|Name=mRNA_H-canaliculatus_M_contigs7992.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7992:4854..4979- (Hapterophycus canaliculatus Oshoro7m male)
CCTTGCATCTCGATCGCACAGCTGAAGAACCACATGTTTTTTGAAGGGAT
CGACTGGATGCGGTTGAGTCAAAGGCACGTGATCCCGCCGTATCTCCCGA
AGGTCAGACAGGAGACAACGAACTAA
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