mRNA_H-canaliculatus_M_contigs7945.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7945.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7945.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A290WNI4_PETFA)

HSP 1 Score: 187 bits (475), Expect = 1.690e-54
Identity = 101/122 (82.79%), Postives = 109/122 (89.34%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAG-GSEKKTKERELVA 363
            GFLSGYPNLPHNELHQDWQSRFKFGF+FF KLAPAVQFQLALAGALSGW+YGLIRAV+PLAE EDAKDLLFDAEVEGIRAAAA+ A+AD+A      AAG+G PV A  GSE+KTKERELVA
Sbjct:  426 GFLSGYPNLPHNELHQDWQSRFKFGFQFFLKLAPAVQFQLALAGALSGWKYGLIRAVTPLAESEDAKDLLFDAEVEGIRAAAAVAAEADSAKAI---AAGKGGPVAASDGSERKTKERELVA 544          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIL6_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 6.120e-46
Identity = 90/121 (74.38%), Postives = 99/121 (81.82%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAGGSEKKTKERELVA 363
            GFLSGYPNLPHNELHQDWQSRFKFG +FFFKLAPAVQFQLALAGALSGW+YGLI+AV+PLAE E+AKDLLFDAEV+ IRAAA  K DA       SGA+ E  PV A G +K+ KER L A
Sbjct:  497 GFLSGYPNLPHNELHQDWQSRFKFGLQFFFKLAPAVQFQLALAGALSGWKYGLIKAVTPLAEAEEAKDLLFDAEVDAIRAAAKAKGDA------ASGASAEKSPV-ADGKKKEEKERALAA 610          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A290WNI6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.600e-41
Identity = 84/121 (69.42%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAGGSEKKTKERELVA 363
            GFLSGYPNLPHNE+HQ WQ RF FG +FFFKLAPAVQFQLALAGALSGWQYGLI AV+PLAEGEDAKD LFD+E+EGIRAAAA KA            AG    V +GG  +K KE  L A
Sbjct:  426 GFLSGYPNLPHNEMHQTWQKRFNFGLQFFFKLAPAVQFQLALAGALSGWQYGLIAAVTPLAEGEDAKDRLFDSEIEGIRAAAAAKATE----------AGVSGNVASGG--EKAKEPALAA 534          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Saccharina sculpera TaxID=416830 RepID=A0A290WNK2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.690e-36
Identity = 71/86 (82.56%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKA 258
            GFLSGYPNLP+NELHQ WQ RF FG +FFFKLAPAVQFQLALAGALSGWQYGLI AVSPLA  EDAKDL FD+EVE IR+AAA  A
Sbjct:  427 GFLSGYPNLPYNELHQTWQGRFGFGLQFFFKLAPAVQFQLALAGALSGWQYGLIAAVSPLAAVEDAKDLKFDSEVEAIRSAAATAA 512          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A290WNI7_UNDPI)

HSP 1 Score: 135 bits (341), Expect = 4.380e-35
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKA 258
            GFLSGYPNLP+NELHQ WQ RF FG +FF KLAPAVQFQLALAGAL+GWQYGLI AVSPLA  EDAKDL FD+EVE IR+AAA  A
Sbjct:  429 GFLSGYPNLPYNELHQTWQGRFGFGVQFFLKLAPAVQFQLALAGALNGWQYGLISAVSPLAAVEDAKDLQFDSEVEAIRSAAATTA 514          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=3 Tax=Sargassum TaxID=3015 RepID=A0A290WNK0_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.000e-31
Identity = 71/122 (58.20%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEGRPVVAGGSEK--KTKERELV 360
            GFLSGYPNLPHNELHQDWQ R  FGF+FF KL P VQ QL  AG L+GW+YGLIR+VSPLA GE+AKDL F  E E IRAAA +  D+ +      G A +  P   G  ++   T E+ELV
Sbjct:  423 GFLSGYPNLPHNELHQDWQGRLGFGFQFFLKLPPLVQLQLMKAGVLNGWRYGLIRSVSPLASGEEAKDLRFADEAESIRAAA-IAVDSASGAPPALGVASDMAPSDRGSLQEGGTTDEKELV 543          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A290WNJ9_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.100e-30
Identity = 71/126 (56.35%), Postives = 85/126 (67.46%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAGEG-----RPVVAGGSEKKTKERELVA 363
            GFLSGYPNLP+NE HQDWQ RF FG +FFFKL PAVQ +LALAGA +GW++GL++AV+PLAE  +A +  FDAE+E IR AA      DA    G GA G+G        VAG  E  TKE   V+
Sbjct:  428 GFLSGYPNLPYNERHQDWQGRFSFGVQFFFKLPPAVQLKLALAGAANGWKHGLLQAVTPLAESAEAVESGFDAEIEAIRRAA------DAKTTGGDGADGDGGKEGETQAVAGRVEGGTKELTSVS 547          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta-cyclase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A290WNJ8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.670e-27
Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAV 276
            GFLSGYPNLPHNE  Q+W  RF FGF+FF KLAPAVQ +L  AGAL+GW+ GLIR+VSP++  ED++DL FDAE+E IR  AA   +AD+AV
Sbjct:  425 GFLSGYPNLPHNEHQQEWYKRFAFGFQFFLKLAPAVQLKLMAAGALNGWRDGLIRSVSPMSILEDSQDLGFDAEIEAIRLKAAAT-EADSAV 515          
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Match: Lycopene (beta cyclase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM92_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.180e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQYGLIRAVSPLAEGEDAKDLLFD 216
            GFLSGYP LPHNE+HQ W  RF FG + +      V+  LA+    +G Q GL+++V+PL++ E  KD   +
Sbjct:  419 GFLSGYPGLPHNEMHQSWGQRFLFGVQLWLYAPVPVKVALAVDAIKTGLQLGLVKSVTPLSDAEYDKDAALE 490          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7945.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Lycopene1.690e-5482.79beta-cyclase n=2 Tax=Scytosiphonaceae TaxID=2891 R... [more]
Uncharacterized6.120e-4674.38protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Lycopene2.600e-4169.42beta-cyclase n=1 Tax=Punctaria latifolia TaxID=900... [more]
Lycopene1.690e-3682.56beta-cyclase n=1 Tax=Saccharina sculpera TaxID=416... [more]
Lycopene4.380e-3580.23beta-cyclase n=1 Tax=Undaria pinnatifida TaxID=743... [more]
Lycopene2.000e-3158.20beta-cyclase n=3 Tax=Sargassum TaxID=3015 RepID=A0... [more]
Lycopene1.100e-3056.35beta-cyclase n=1 Tax=Dictyopteris undulata TaxID=1... [more]
Lycopene1.670e-2765.22beta-cyclase n=1 Tax=Ishige okamurae TaxID=233772 ... [more]
Lycopene9.180e-1144.44beta cyclase chloroplast n=1 Tax=Tribonema minus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7945contigH-canaliculatus_M_contigs7945:4..973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTG3
Preferred nameLCYB
PFAMsLycopene_cycl
Model size366
Max annot lvl2759|Eukaryota
KEGG rclassRC01004,RC01612,RC01964,RC02020,RC02021
KEGG koko:K06443,ko:K06444,ko:K14593
KEGG ReactionR03824,R04801,R05341,R06960,R06962,R06963,R07320,R07321,R07840,R07856
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009509,GO:0009536,GO:0009975,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016853,GO:0016860,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045436,GO:0046148,GO:0071704,GO:1901576
Exons2
Evalue1.38e-48
EggNOG OGs2CN09@1|root,2QT2F@2759|Eukaryota
EC5.3.99.8,5.5.1.18,5.5.1.19
Descriptiontetraterpenoid biosynthetic process
Cds size366
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854126.7424684-CDS-H-canaliculatus_M_contigs7945:3..961696854126.7424684-CDS-H-canaliculatus_M_contigs7945:3..96Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7945 4..96 +
1696854126.759005-CDS-H-canaliculatus_M_contigs7945:700..9731696854126.759005-CDS-H-canaliculatus_M_contigs7945:700..973Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7945 701..973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7945.1.1prot_H-canaliculatus_M_contigs7945.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7945 4..973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7945.1.1

>prot_H-canaliculatus_M_contigs7945.1.1 ID=prot_H-canaliculatus_M_contigs7945.1.1|Name=mRNA_H-canaliculatus_M_contigs7945.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=122bp
GFLSGYPNLPHNELHQDWQSRFKFGFKFFFKLAPAVQFQLALAGALSGWQ
YGLIRAVSPLAEGEDAKDLLFDAEVEGIRAAAAMKADADAAVVAGSGAAG
EGRPVVAGGSEKKTKERELVA*
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mRNA from alignment at H-canaliculatus_M_contigs7945:4..973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7945.1.1 ID=mRNA_H-canaliculatus_M_contigs7945.1.1|Name=mRNA_H-canaliculatus_M_contigs7945.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=970bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7945:4..973+ (Hapterophycus canaliculatus Oshoro7m male)
GGCTTCCTATCCGGATACCCGAACCTTCCGCACAACGAGCTGCACCAGGA CTGGCAGAGCCGTTTCAAGTTCGGGTTCAAATTTTTCTTTAAGGTGCAAA ATCACAAGCTGCCCGCGCACAACATCGTCGGGTGTTGAAGCGCCGATTGG TTCTATTGAATACCCCGTGAGCAATCGGTTTGATAATACGTGCCGAGACC AGTTTCCTGCAGTCCTTTATTGTCGTTTATTTTCGTTTATCCTAAACATC TTCAGATGAAGTACGCATCTCTCAACGACACCGGACGAACACCTACTGAG TTACGTCGAGGCCTCTGTTGAGTCCCAAACAATGAGGGTCCATCGATGTG TAAGGTTTTTGTGACGTACCGCAATTTCATGTACTCACTTCGAGTTATCA AATCGTGCTTCATGACCTAGGCCGCGCGTTCAACTAGACTGTCGAAAAAC ACTCCCTGTGATGAAACGCCAAGCAAGTAAATGAGTTCACTGCGGTCCAG GTAGTAGTTGGTATTGCGCGTCGCTTCTCAAAGCATCATTTGTCTACGCC ACACGCTTGCGTTGCTGCCGCTAGTTCGCACTTGGTGTAATATTTGGAGA ACGTGACCGCGGCGCCTTTCTCACATCCTTCGCCATCCTCCGGCGGGCGC TCTCGTCTCCCTCGCGGCCTGACCCACCGCTGTTTTCGACGACACAGCTT GCTCCCGCGGTGCAGTTTCAGTTGGCGCTGGCGGGAGCGCTGAGCGGGTG GCAGTACGGCCTGATTCGGGCGGTGAGCCCCTTGGCGGAAGGCGAAGACG CCAAAGATCTCTTGTTTGACGCCGAAGTGGAAGGGATCCGGGCCGCGGCG GCGATGAAGGCTGACGCTGACGCCGCAGTCGTTGCCGGGAGCGGCGCTGC GGGCGAAGGGAGGCCCGTGGTGGCGGGCGGCAGCGAGAAGAAGACAAAGG AGCGAGAATTGGTGGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7945:4..973+

>mRNA_H-canaliculatus_M_contigs7945.1.1 ID=mRNA_H-canaliculatus_M_contigs7945.1.1|Name=mRNA_H-canaliculatus_M_contigs7945.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7945:4..973+ (Hapterophycus canaliculatus Oshoro7m male)
GGCTTCCTATCCGGATACCCGAACCTTCCGCACAACGAGCTGCACCAGGA
CTGGCAGAGCCGTTTCAAGTTCGGGTTCAAATTTTTCTTTAAGCTTGCTC
CCGCGGTGCAGTTTCAGTTGGCGCTGGCGGGAGCGCTGAGCGGGTGGCAG
TACGGCCTGATTCGGGCGGTGAGCCCCTTGGCGGAAGGCGAAGACGCCAA
AGATCTCTTGTTTGACGCCGAAGTGGAAGGGATCCGGGCCGCGGCGGCGA
TGAAGGCTGACGCTGACGCCGCAGTCGTTGCCGGGAGCGGCGCTGCGGGC
GAAGGGAGGCCCGTGGTGGCGGGCGGCAGCGAGAAGAAGACAAAGGAGCG
AGAATTGGTGGCGTGA
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