mRNA_H-canaliculatus_M_contigs7930.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7930.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7930.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7930.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P4_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 4.330e-83
Identity = 138/156 (88.46%), Postives = 142/156 (91.03%), Query Frame = 1 
Query:    1 MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAAAQQEAVQASGFKPRSGKQNAQIGLKGFTQATQNPAMFTDAMSMLGDPSAVKEAEAMMNDPEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKEATDKYNAMMK 468
            MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMA AQ+EAV+ASGFKPRSGKQNAQIGLKGFTQATQNPAMF DAMSMLGDPS            EFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMK+ATDKYNA+MK
Sbjct:    1 MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKQATDKYNALMK 156
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BLAST of mRNA_H-canaliculatus_M_contigs7930.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIF9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.720e-24
Identity = 58/133 (43.61%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:   40 AKNAPARSNAANKDDLAGLDEILSNPEQMAAAQQEAVQASGFKPRSGKQNAQIGLKGFTQATQNPAMFTDAMSMLGDPSAVKEAEAMMNDPEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKE 438
            +K+   +SNAANK+DL GLDE+L++P  M   + + V  +  K ++G +NA+IG++GF+QAT+NPAMF +AMSML DP+AVK                ++M +LK + +F++AM  AQ K+Q L+ DPEK+++
Sbjct:   11 SKSPTRKSNAANKEDLDGLDELLADPALMKQFEDKTVPPA--KKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXXQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7930.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.330e-8388.46protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P4... [more]
Uncharacterized5.720e-2443.61protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7930contigH-canaliculatus_M_contigs7930:1709..4902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008620.1
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854126.2039118-CDS-H-canaliculatus_M_contigs7930:1708..19151696854126.2039118-CDS-H-canaliculatus_M_contigs7930:1708..1915Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7930 1709..1915 -
1696854126.2234387-CDS-H-canaliculatus_M_contigs7930:3172..33581696854126.2234387-CDS-H-canaliculatus_M_contigs7930:3172..3358Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7930 3173..3358 -
1696854126.236424-CDS-H-canaliculatus_M_contigs7930:4014..41231696854126.236424-CDS-H-canaliculatus_M_contigs7930:4014..4123Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7930 4015..4123 -
1696854126.2478008-CDS-H-canaliculatus_M_contigs7930:4792..49021696854126.2478008-CDS-H-canaliculatus_M_contigs7930:4792..4902Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7930 4793..4902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7930.1.1prot_H-canaliculatus_M_contigs7930.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7930 1709..4902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7930.1.1

>prot_H-canaliculatus_M_contigs7930.1.1 ID=prot_H-canaliculatus_M_contigs7930.1.1|Name=mRNA_H-canaliculatus_M_contigs7930.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=204bp
MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAAAQQEAV
QASGFKPRSGKQNAQIGLKGFTQATQNPAMFTDAMSMLGDPSAVKEAEAM
MNDPEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKEATDK
YNAMMKAQQDAAAAATAAAGGGEAGAPAAAATAAETEPSLEGKEPAVPEA
GGKE
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mRNA from alignment at H-canaliculatus_M_contigs7930:1709..4902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7930.1.1 ID=mRNA_H-canaliculatus_M_contigs7930.1.1|Name=mRNA_H-canaliculatus_M_contigs7930.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3194bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7930:1709..4902- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGGGCAACAAGAAGAAGAACAAGGGAGCCAACAAGGCCAAGAATGC
ACCTGCTCGAAGCAATGCCGCCAACAAGGACGACCTGGCCGGGCTTGACG
AGATCTTGAGGTTAGAATTAAAAGAGAGCGGAAAACAGCATGGAATAAAC
GCTCAAACCTACCCTTTGCGCAAGTGCTCGCCTACACCTGGGCGGGGAAG
CCGTAGACTAGACAGCAGTGATGCTCGTCGCCGACACGCGCATCCGTAAG
AGTCAGGCTTCCAATCCCACGAAACTTACCAGAAACTGTTGGGAGGATCG
CGGGCCGGAATGTGTGGATTATCAGATGAGGAGTTGAAGTACCAGCCGTA
GAATTGTGTCCTCGGAGCATGAAATGGCATCGGACTACTTGTACAAGGCC
TGTCCCGGCAGGTGTGTGCGCTGCTGCCGAGATCAGGGGCGTGGCAGTGT
TCAGCCTGAGGGGGAGCGGAAGCGTTATCTCCGCGAGCACAGCACGGCTG
CTCTTGCTGCGTCTTGAAACTTCATTCCAAGAGCGCGTGCAATCGTCAGG
TGTTCGTCAGCTGTGGACAATGGATTCTGCTGCCTGCTGCCTGCTTCTGT
AGATGTCCAGAGTAGTTAATATTCTACGTGAGGTAGTCTTCCGTAAGCGG
CGGCGACGATGGCGAGAGTTGCCATTCGAGAGTGTGATGGGTCATGCCAC
CCTGCGATAGTAACGTGTTCGCCCCGGCCCAATCTCCTTCCTGCTCCCTT
CCCGCTTATGCTTCCTCTCCTGCCTCTAGTAACCCGGAGCAAATGGCGGC
GGCGCAGCAAGAGGCGGTGCAGGCGTCGGGCTTCAAGCCGCGCTCAGGGA
AGCAGAATGCTCAGATCGGCCTCAAGGGTTTCACGCAGGTACGCGGGGCA
TGATCCTTGTGGAAGCCTCGAAATGCACGTGTGCCTGGTGGAGCGCTTTG
TTGAATCGTTTGTCTTGGTTTCGGTTGTTGGGAAAGATTTGTGTCGTGCC
TTTCTGCTGAATGCTGTATGGTCATCGGACTCGTTCTCTGCTGCGGGAGT
CGTCCTCGCTCACGAACACCCTTGGGTGCATAGGATCGATGACAGATGGC
GGACCGAAAGCGCTGCGTTCTGCCGTGTTACCCCTCCGCGGCATGCAGCC
ACTGGATGACTCTGGCCGGACAAGACACCGCGCTTTTCTCGTAGATAACC
GGTTCGAGATCAAGTTCCACCTGCCTCTGTGGGTGACCTCCCTCCCGTCC
TTACCGGGCGTTCATCGGAGAGCTGACCCAGGGGTTTTGATGACAAAATG
CGTACTTGTATTCCACCTTGGCAGGCTTCAGTCTCTGGCCGCTGTTGGTT
GCGCCGACTGAGGACGGTTTTGTCTTTCATGGGCGAGTCGATGAATACGT
TCCGTGTCAGGGAGGCGCAAGATGCGGCAGGCACAAAAAGCGGCATGATT
CATGCGAAGGACGCTCGTGTGTATTCAGCAGTCCATGCACCGTGAAGTGT
TGCATGGAAAGTTATTCAAGGCGCTCTGCTTCTTGACTGAACAGGCGACG
CAAAACCCGGCCATGTTTACGGACGCCATGAGCATGCTCGGGGACCCCTC
TGCCGTCAAAGAGGCGGAAGCTATGATGAACGACCCCGAGTTCAAATCTG
AGATCAACCAGTACATGGAGACCCTCAAGAACAACTCGGCTTTCCGCGAT
GCTATGGCCGAGGCACAGCGCAAGTATCAGGTGATGTTTTCTTCCGTTTC
ATTCCCAGTCTCTTCTGCCGCGCATGACACCAGTGGCATTGCCTCCCAGG
TTTCTGTCTGGGCTAAGATGCAGGTCTGCTCGTACTGTTATGGCTCCGAT
CCACGATACAAAATGCTTCCCGATGTAGCTTATCCGTGTGCGTGTCCAAT
CCAGCGTGAGACGGAGTCGTATGGAAAGCTTGCTCTCCTGGAACCAACCA
CTCTTGCTTTTATTTCGGCGATGTCACTCTTGGATCCTTGTCGTTGTGAT
GGCTTAGTAAGGAGCTACGTGCGGCACAGGCATTACGTGCTTGACGTATC
CCATGCCAGGTACATAAAATTGAAGCACGGCAGTTACCCGGCAGGTATTT
GAGTGTTTCCGGCTTGTGTGTGCACTGGGCGGAGTGTATGCGCTCTTAAA
ATAGCGGCGGTCCATGGCGTTCGTTTTGATTTGCATCGCACGTGGTCGCT
TTTTCAACTAGCTTCGTCCCGAGCGTGCCCCCACAGGGTTCCCGAGTTTT
TTTCCCCTCGCCGACAGAATGCCCATGCATGTGCATGTTCGCTTCGCGCG
CACGAAGCACTGAGTAATCGCATCTGCGATCAGGTTGTCGGCCTCTTTTG
TGAGACAAAAGAGTCATTCAACACCAAGGGAATACCCTCCGCTGAGACAA
AATAACAAATGAACGACCTAGGAGGATTCTAGTTGCCCCGCCTCCTAGAG
CAGCATCTCCCTCGTGGTAATGGTATTGGTGGTTCTCTGTGCCCTTTCCT
TGTGTGTCTTACTCCGTGCGTACGTCAGCGTCTCGTTTATACTATAGCTG
TTGTCCGTGTAGTCAACTTGCGGTAGAGTCGACAAGCCGACATACCCGTT
CGTCCTGGTTTCCCAACAGAACACCACACGTGATACGTGTGCGTCTTTTT
CTTCGTTTGTGGTATGGTACGGTATGGTACGGTGTATGAGTGTGACGGTG
GAGGACTACTCTTGACGGTCGAGTCCGTTTATCCCACTTGTAAAGGCTTG
CATGCGCCGAAGTGGTTAGGACGGCTACAAATGTTGGAGGCAACAACGTC
TACGTGCTAGCAGTAAAAGCAACTTGCAGAGACACCTCGCAGAGACACCT
TGCAGAGACACCAACCAGAAAAAGAGCCCAACATCATGAACACCCCTAGT
GCCCACCACCACAACAAGAAACAACAAAACAACAACCCTGATGGCCATCA
CAACAATCCTGACCATCACCACAACAACACGCGGCAGGCGCTGCTGGCAG
ACCCTGAGAAGATGAAGGAGGCCACGGACAAGTACAACGCGATGATGAAG
GCGCAGCAGGACGCGGCGGCGGCGGCAACGGCAGCAGCTGGAGGGGGCGA
GGCGGGGGCGCCAGCGGCCGCAGCGACGGCGGCAGAAACGGAACCATCTT
TGGAAGGGAAGGAGCCAGCAGTTCCCGAAGCTGGAGGGAAGGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7930:1709..4902-

>mRNA_H-canaliculatus_M_contigs7930.1.1 ID=mRNA_H-canaliculatus_M_contigs7930.1.1|Name=mRNA_H-canaliculatus_M_contigs7930.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7930:1709..4902- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGGGCAACAAGAAGAAGAACAAGGGAGCCAACAAGGCCAAGAATGC
ACCTGCTCGAAGCAATGCCGCCAACAAGGACGACCTGGCCGGGCTTGACG
AGATCTTGAGTAACCCGGAGCAAATGGCGGCGGCGCAGCAAGAGGCGGTG
CAGGCGTCGGGCTTCAAGCCGCGCTCAGGGAAGCAGAATGCTCAGATCGG
CCTCAAGGGTTTCACGCAGGCGACGCAAAACCCGGCCATGTTTACGGACG
CCATGAGCATGCTCGGGGACCCCTCTGCCGTCAAAGAGGCGGAAGCTATG
ATGAACGACCCCGAGTTCAAATCTGAGATCAACCAGTACATGGAGACCCT
CAAGAACAACTCGGCTTTCCGCGATGCTATGGCCGAGGCACAGCGCAAGT
ATCAGGCGCTGCTGGCAGACCCTGAGAAGATGAAGGAGGCCACGGACAAG
TACAACGCGATGATGAAGGCGCAGCAGGACGCGGCGGCGGCGGCAACGGC
AGCAGCTGGAGGGGGCGAGGCGGGGGCGCCAGCGGCCGCAGCGACGGCGG
CAGAAACGGAACCATCTTTGGAAGGGAAGGAGCCAGCAGTTCCCGAAGCT
GGAGGGAAGGAA
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