mRNA_H-canaliculatus_M_contigs7917.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7917.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7917.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: Rab-GAP (TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKI7_ECTSI)

HSP 1 Score: 503 bits (1296), Expect = 5.000e-165
Identity = 259/301 (86.05%), Postives = 271/301 (90.03%), Query Frame = 1
Query:    1 MRQLLRKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEG-VLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALSDPELPTSDISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLSQ 900
            MRQLLRKA F+PA LRKDVWRLLILGRVEA   G  + AEG V  LD AILST+LDLENQRVVRVDVERTR +L+QFKRPRVKN+LAR+LT+ CKTHGLGYKQ             GMHEVLAPFVALSDPELPTSDISLCY AF+RRFLPYAFN+DEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAE ILKAEEANLPETMCRLTDGMRSVEE+RAL+RTAKDLMLNTPKSFRKILRSALY NLSQ
Sbjct:    1 MRQLLRKAAFIPAFLRKDVWRLLILGRVEA---GGGKDAEGDVTALDAAILSTDLDLENQRVVRVDVERTRPALDQFKRPRVKNLLARILTYHCKTHGLGYKQ-------------GMHEVLAPFVALSDPELPTSDISLCYSAFLRRFLPYAFNQDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEAILKAEEANLPETMCRLTDGMRSVEEVRALMRTAKDLMLNTPKSFRKILRSALYANLSQ 285          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0Q7_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.630e-58
Identity = 130/295 (44.07%), Postives = 169/295 (57.29%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALS-DPELPTSDISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLS 897
            R  G VP  +R  VW+ +         LG  RA    L L+ +I+  E DLENQ+V+  D  RTR     F++P    ++A++LT++CK  G+ YKQ             GM+EVLAPF+ L  DP LP   +  C+ A I RFLP+ F  D EF SLQ  F+L+RLLLLYH P LC +LDQ+ + PELY TPWFMTLF+ SL    ++ +WDF+L    P L HFV  A V  N + IL+AE A LP+ +  LT G RS  EL A+   A  L   TP+SF + L S  YG  S
Sbjct:  150 RSLGGVPDRVRSSVWKEI---------LGVTRAER--LFLEQSIMQVEEDLENQKVISADACRTRGHDPFFRQPETVELIAKLLTYYCKCRGVRYKQ-------------GMNEVLAPFLILERDPPLPEGVVFQCFYALIDRFLPHVF-VDREFKSLQCSFQLYRLLLLYHDPALCHYLDQHDMTPELYVTPWFMTLFARSLPADLVFRLWDFFLLEEHPFLLHFVAYALVAANKDRILRAEIALLPQVLTSLTFGSRS--ELEAICEAALQLANTTPRSFERDLYSVCYGGYS 417          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLM6_GLOUD)

HSP 1 Score: 210 bits (535), Expect = 7.520e-58
Identity = 125/296 (42.23%), Postives = 170/296 (57.43%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALS-DPELPTSDISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLSQ 900
            R  G VPA +R  VW+ L         LG  R+    L LD +IL  E DLENQ+V+  D  RTR +   FK+P    ++ ++LT++CK   + YKQ             GM+EVLAPF+ L  DP +P   +  C+ A I +FLP  F  D EF SLQ  F+L+RLL+LYH P+LC +LDQ+ + PELY TPWFMTLF+ +L    ++ +WDF+L   DP L HFV  A V  N E I+ AE A LP+ +  +T  +++  EL A+  TA  L   TP+SF + L S  YG   +
Sbjct:  175 RSLGGVPAHMRSSVWKEL---------LGVARSER--LYLDQSILQVEEDLENQKVISADAIRTRGNDPYFKQPETVELVTKILTYYCKCRNIRYKQ-------------GMNEVLAPFLILERDPPMPEGIVFQCFYALIDKFLPQVF-VDREFKSLQCSFQLYRLLMLYHDPKLCHYLDQHDMTPELYVTPWFMTLFARNLQPELVFMLWDFFLLEEDPFLMHFVAYAMVAANKEDIMSAEIAMLPQVLSNIT--LKTRAELEAVCETALALSKTTPRSFERDLYSVCYGGYKE 443          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: Rab-GAP (TBC domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4SIU0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.620e-56
Identity = 119/303 (39.27%), Postives = 170/303 (56.11%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALSDPE------LPTSD--ISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLSQ 900
            R  G VP  LR  VW+ L LG   +  L          +LD +IL  E DL+NQRV+  D  RTR +  +FK+P    ++ ++LT++CK   + YKQ             GM+EVLAPF+ L++        +P ++  +  C+ A I +FLP+ F  D EF SLQ  F+L+RLL+LYH P LC +LDQ+ + PELY TPWFMTLF+  L    ++ +WDF+L   DP L HFV  + V  N + I +A+ A LP+ +  LT    S +EL  +   A  L   TP+SF++ L S  YG  ++
Sbjct:   16 RSLGGVPTELRSRVWKEL-LGVAHSERL----------NLDQSILQVEEDLDNQRVIAADASRTRGNEPRFKQPETVELVIKLLTYYCKCRSIQYKQ-------------GMNEVLAPFLLLTEQREGSKESVPLAEGVVFQCFYALIDKFLPHVF-VDREFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARLLPPEFVFYLWDFFLLEEDPYLLHFVAYSLVAANRKRIFEADVAMLPQVLSSLT--FASYDELEQVCTAALTLSDATPRSFKRDLYSVCYGGFTE 291          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZA17_PHYSP)

HSP 1 Score: 202 bits (515), Expect = 3.570e-55
Identity = 124/302 (41.06%), Postives = 174/302 (57.62%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVAL------SDPELPTSD--ISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLS 897
            R  G VPA LR  VW+ L         LG  R+ +  L LD +IL  E DL+NQRV+  D  RTR +  +F++P    ++ ++LT++CK   + YKQ             GM+EVLAPF+ L      SD  +P ++  +  C+ A I +FLP+ F  D+EF SLQ  F+L++LL+LYH P LC +LDQ+ + PELY TPWFMTLF+ SL    ++ +WDF+L   DP L HFV  A V  N E I +AE   LP+ +  LT   R  EEL  +  +A  +  +TP+SF++ L S  YG  +
Sbjct:   36 RALGGVPAQLRARVWKEL---------LGVARSEQQRLCLDRSILKVEEDLDNQRVIAADAARTRGNEPRFQQPETVELVVKLLTYYCKCRSIRYKQ-------------GMNEVLAPFLLLTERRDGSDEPVPLAEGVVFQCFYALIDKFLPHVF-VDKEFRSLQCSFQLYKLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVANNRERIFEAEIPMLPQVLSSLTFSTR--EELEQVCASALAIYESTPRSFKRDLYSVCYGGFT 312          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DJU1_9STRA)

HSP 1 Score: 202 bits (514), Expect = 4.870e-55
Identity = 122/302 (40.40%), Postives = 177/302 (58.61%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALSDPE------LPTSD--ISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLS 897
            R  G VP+ LR  VW+ L         LG  R+ +  L LD +IL  + DL+NQRV+  D  RTR +  +F++P    ++A++LT++CK   + YKQ             GM+EVLAPF+ L++        +P ++  +  C+ A I RF+P+ F  D+EF SLQ  F+L++LL+LYH P LC +LDQ+ + PELY TPWFMTLF+ SL    ++ +WDF+L   DP L HFV  A V  N + IL+AE A LP+ +  LT   R  EEL  +  +A  +  +TP+SF++ L S  YG  +
Sbjct:   84 RALGGVPSQLRARVWKEL---------LGVTRSEQQRLCLDRSILQVQEDLDNQRVIAADAARTRGNEPRFQQPETVELVAKLLTYYCKCRSIRYKQ-------------GMNEVLAPFLLLTEQRDGCEEPVPLAEGVVFQCFYALIDRFMPHVF-VDKEFRSLQSSFQLYKLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLSPECVFYLWDFFLLEEDPYLLHFVAYALVAANKDRILQAEIAMLPQVLSSLTFSSR--EELEQVCASALVISESTPRSFKRDLYSVCYGGFT 360          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SK46_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.660e-54
Identity = 123/303 (40.59%), Postives = 171/303 (56.44%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWR-LLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALSDPE--------LPTSDISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLS 897
            R  G VP++LR  VW+ LL + R E             L LD +IL  E DL+NQRV+  D  RTR +  +FK+P    ++ ++LT++CK   + YKQ             GM+EVLAPF+ L++          L    +  C+ A I RFLP+ F  D+EF SLQ  F+L+RLL+LYH P LC +LDQ+ + PELY TPWFMTLF+ SL    ++ +WDF+L   DP L HFV  A V  + E + +A+ A LP+ +  LT   R  +EL  +   A  +   TPKSF++ L S  YG L+
Sbjct:   88 RSLGGVPSNLRSQVWQELLGVARTER------------LSLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETVELVVKLLTYYCKCRNIRYKQ-------------GMNEVLAPFLLLTEQRDGAQERTPLAEGVVFQCFYALIDRFLPHVF-VDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAASREKVFEADIAMLPQVLSSLTFSSR--DELERVCADALAISELTPKSFKRDLYSVCYGGLT 362          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y4U0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.730e-54
Identity = 122/303 (40.26%), Postives = 171/303 (56.44%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWR-LLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALSDPELPTSD--------ISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLS 897
            R  G VP+ LR  VW+ LL + R E  +L            D +IL  E DL+NQRV+  D  RTR +  +F++P    ++ ++LT++CK   + YKQ             GM+EVLAPF+ L++      D        +  C+ A I RFLP+ F  D+EF SLQ  F+L+RLL+LYH P LC +LDQ+ + PELY TPWFMTLF+ SL    ++ +WDF+L   DP L HFV  A V  N + IL+A+ A LP+ +  LT   R  +EL  +  +A     +TP+SF++ L S  YG  S
Sbjct:  115 RSLGGVPSDLRSQVWKELLGVARTERVSL------------DQSILQVEEDLDNQRVIAADAARTRGNEPRFQQPETVELVVKLLTYYCKCRSIRYKQ-------------GMNEVLAPFLLLTEQREGCEDRVPLAEGVVFQCFYALIDRFLPHVF-VDKEFRSLQCSFQLYRLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEIVFYLWDFFLLEEDPYLMHFVAYALVAANRKKILEADIAMLPQVLSSLTFSCR--DELEQVCVSALAFSESTPRSFKRDLYSVCYGGFS 389          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GDY0_PHYRM)

HSP 1 Score: 200 bits (509), Expect = 2.330e-54
Identity = 122/303 (40.26%), Postives = 173/303 (57.10%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWR-LLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALSDPE------LPTSD--ISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLS 897
            R  G VP+ LR  VW+ LL + R E   L            D +IL  + DL+NQRV+  D  RTR +  +F++P    ++ ++LT++CK   + YKQ             GM+EVLAPF+ L++        +P +D  +  C+ A I RFLP+ F  D+EF SLQ  F+L+RLL+LYH P LC FLDQ+ + PELY TPWFMTLF+ SL    ++ +WDF+L   DP L HFV  A V  N + I +AE A LP+ +  LT   R  +EL  +  +A  +  +TP+SF++ L S  YG  +
Sbjct:  505 RSLGGVPSELRAQVWKELLGVARSERVCL------------DQSILQVQEDLDNQRVIAADAARTRGNEPRFQQPETVELVVKLLTYYCKCRSIRYKQ-------------GMNEVLAPFLLLTEQRDGCADLVPLADGIVFQCFYALIDRFLPHVF-VDKEFRSLQCSFQLYRLLMLYHDPELCHFLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANRQEIFEAEIAMLPQVLSSLTFSSR--DELEQVCSSALTISESTPRSFKRDLYSVCYGGFT 779          
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Match: TBC1 (domain family member 23 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WE18_9STRA)

HSP 1 Score: 199 bits (506), Expect = 5.680e-54
Identity = 122/302 (40.40%), Postives = 173/302 (57.28%), Query Frame = 1
Query:   16 RKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEGVLDLDVAILSTELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGYKQASTARRRTCMHPGGMHEVLAPFVALSDPE------LPTSD--ISLCYGAFIRRFLPYAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFMTLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEANLPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLS 897
            R  G VPA+LR  VW+ L+           DR     L LD +IL  E DL+NQRV+  D  RTR +  +FK+P    ++ ++LT++CK   + YKQ             GM+EVLAPF+ L++        +P ++  +  C+ A I +FLP+ F  D+EF SLQ  F+L++LL+LYH P LC +LDQ+ + PELY TPWFMTLF+ SL    ++ +WDF+L   DP L HFV  A V  N E IL A+ A LP+ +  LT   R  +EL  +   A  +  +TP+SF++ L S  YG  +
Sbjct:   79 RSLGGVPAALRAQVWKELL------GVAHSDR-----LYLDQSILQVEEDLDNQRVIAADAARTRGNEPRFKQPETAELVVKLLTYYCKCRSVTYKQ-------------GMNEVLAPFLLLTEQRDGCEDPVPLAEGVVFQCFYALIDKFLPHVF-VDKEFKSLQCSFQLYKLLMLYHDPELCHYLDQHDMTPELYVTPWFMTLFARSLPPEFVFYLWDFFLLEEDPYLLHFVAYALVAANREKILAADIAMLPQVLSSLTFSSR--DELEQVCVDALAISESTPRSFKRDLYSVCYGGFT 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7917.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rab-GAP5.000e-16586.05TBC domain-containing protein n=2 Tax=Ectocarpus T... [more]
TBC11.630e-5844.07domain family member 23 n=1 Tax=Pythium brassicum ... [more]
TBC17.520e-5842.23domain family member 23 n=1 Tax=Globisporangium ul... [more]
Rab-GAP2.620e-5639.27TBC domain-containing protein n=1 Tax=Phytophthora... [more]
TBC13.570e-5541.06domain family member 23 n=1 Tax=Phytophthora sojae... [more]
TBC14.870e-5540.40domain family member 23 n=6 Tax=Phytophthora TaxID... [more]
TBC11.660e-5440.59domain family member 23 n=2 Tax=Phytophthora TaxID... [more]
TBC11.730e-5440.26domain family member 23 (Fragment) n=1 Tax=Phytoph... [more]
TBC12.330e-5440.26domain family member 23 n=1 Tax=Phytophthora ramor... [more]
TBC15.680e-5440.40domain family member 23 n=1 Tax=Phytophthora megak... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7917contigH-canaliculatus_M_contigs7917:2074..4903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKI7
Preferred nameTBC1D23
PFAMsRabGAP-TBC,Rhodanese
Model size900
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0001667,GO:0001817,GO:0001819,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007417,GO:0007420,GO:0008047,GO:0008150,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016477,GO:0016482,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0030707,GO:0030855,GO:0031175,GO:0031347,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032675,GO:0032680,GO:0032755,GO:0040011,GO:0042147,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048568,GO:0048583,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050727,GO:0050789,GO:0050790,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060322,GO:0060429,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0080134,GO:0090130,GO:0090132,GO:0098772,GO:0098791,GO:0120036,GO:1903555,GO:1990403
Exons5
Evalue8.19e-166
EggNOG OGsKOG3636@1|root,KOG3636@2759|Eukaryota
Descriptionembryonic brain development
Cds size900
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854125.3364146-CDS-H-canaliculatus_M_contigs7917:2073..24181696854125.3364146-CDS-H-canaliculatus_M_contigs7917:2073..2418Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7917 2074..2418 +
1696854125.3514009-CDS-H-canaliculatus_M_contigs7917:3149..32931696854125.3514009-CDS-H-canaliculatus_M_contigs7917:3149..3293Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7917 3150..3293 +
1696854125.3616574-CDS-H-canaliculatus_M_contigs7917:3623..37761696854125.3616574-CDS-H-canaliculatus_M_contigs7917:3623..3776Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7917 3624..3776 +
1696854125.3716807-CDS-H-canaliculatus_M_contigs7917:4300..43931696854125.3716807-CDS-H-canaliculatus_M_contigs7917:4300..4393Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7917 4301..4393 +
1696854125.3826594-CDS-H-canaliculatus_M_contigs7917:4738..49031696854125.3826594-CDS-H-canaliculatus_M_contigs7917:4738..4903Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7917 4739..4903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7917.2.1prot_H-canaliculatus_M_contigs7917.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7917 2074..4903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7917.2.1

>prot_H-canaliculatus_M_contigs7917.2.1 ID=prot_H-canaliculatus_M_contigs7917.2.1|Name=mRNA_H-canaliculatus_M_contigs7917.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=300bp
MRQLLRKAGFVPASLRKDVWRLLILGRVEAAALGDDRAAEGVLDLDVAIL
STELDLENQRVVRVDVERTRTSLEQFKRPRVKNMLARVLTHFCKTHGLGY
KQASTARRRTCMHPGGMHEVLAPFVALSDPELPTSDISLCYGAFIRRFLP
YAFNKDEEFLSLQICFRLFRLLLLYHHPRLCRFLDQYQLQPELYATPWFM
TLFSNSLDLPRLYEVWDFYLYWGDPALHHFVVLAFVIGNAEVILKAEEAN
LPETMCRLTDGMRSVEELRALLRTAKDLMLNTPKSFRKILRSALYGNLSQ
back to top

mRNA from alignment at H-canaliculatus_M_contigs7917:2074..4903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7917.2.1 ID=mRNA_H-canaliculatus_M_contigs7917.2.1|Name=mRNA_H-canaliculatus_M_contigs7917.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2830bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7917:2074..4903+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAGACAGCTGCTGCGCAAGGCTGGCTTCGTACCTGCGTCCTTGCGCAA AGACGTCTGGAGGCTGCTTATCCTTGGTCGCGTTGAGGCGGCAGCCTTGG GCGACGATAGGGCGGCGGAAGGTGTTCTTGACCTGGATGTAGCGATATTG TCGACGGAGCTGGACTTGGAGAACCAACGGGTTGTGCGGGTTGACGTCGA GAGGACGAGGACCTCGTTGGAGCAGTTCAAGAGGCCCAGGGTCAAGAACA TGCTGGCGCGGGTGCTGACACATTTTTGCAAGACCCACGGCCTTGGGTAT AAGCAGGCAAGCACAGCTCGCCGCCGAACGTGCATGCATCCTGGCGTTGG GTGTTTTCTCGTCGTGGTACTCTTCACTTGTGATAGTTACCTCCTGCTAC ACCTTACCTCACATTTCTGCGGTACGATACATCCAACACGTGGGAGGTAA ACACAAACTATGGGCGTGACTATTTTTACCTGCCACGCACTCGTTGACCT TATTCGACGTAGGCGTGCCGCCTTCACGTTACATGGCGACTGCGATGTTC ATTACTTACCCCGTTTCTTTGCACAAACAATATCTGAAGACTGCCCGTAG GAGACAAGCTCTCCTTGTCCCTGCTGCGCGATTCCGTGCGAAGGCGTGCC ATGGTGCCGATTGTGTCCACTCGGACTTCTCACGTTTATTCGCTCCCGTC GTGACCTAGTCCGGGCGCCCGTCAACCTCGAATCATGCGGCGAACAGCGG GAGCACTTTGACCGCCATCCTTCGCCCCAACCAGAGCCAAGTGTTAAAAA AAATACCCAAAATTATTGTCGCAGTCTGCTGCTGATGCCATCAATCCTCT TGATCAACGGTCGGGCTCTCGTCCGACCCACCCGTGCGCCCGCATCGCAA CTAAACACGTGACCCGATACCCATGCTTCGAACGCCGCGGTTCTTCGGCG GCTTGGGGAGCACCCGTTCATAAGATTTTGGTTTCCACTGTGTCGACGCC GATGAGTAGATCAACGCCGGCTGACGCCTGTCTTGCGGCGTGTCCCCCCT GCCGTGTCTGTCCGTCGCCGTCGCAGGGAATGCACGAGGTCCTCGCCCCT TTCGTTGCTCTCTCTGACCCGGAGCTGCCCACGTCGGATATTTCTCTCTG CTACGGCGCCTTCATCAGGCGCTTTCTCCCCTACGCTTTCAACAAGGACG AAGAGTTCCTCTCCTTGCAGGTCTTTGGTTCGATGTTCGTAGTTTTATTT AGGTGATTGTCAAACCCTGTTGCGTGATCTAGGCGACAACGTTTGTTCCG TCGGTTGCCATCGCTGGAATCCCGGCTCAAAGAGCAATCCCAACCTTCGT GGCACGTCTCGCGACGAGTCACGCCACTCTCAGAAGTTTGGTCCTTGCGA AAGACATTGGATGCACCGTTTGCCGCCCGAGTCGTGTTGCTCCTCCGCCA CTTGCTGCCCTTCCCAACAGCCTCCACGTTCCCCCTCCGCTGGCGCGTCA TGTAGCAACTTTGAGCCTCTCTCCGTTCCCCGCCACGTGTTGGAACGCAG ATCTGCTTCAGGCTCTTCCGCCTGTTGCTTCTCTACCATCACCCTCGGCT GTGTCGATTCCTGGATCAGTACCAGCTGCAGCCGGAGCTGTATGCGACGC CGTGGTTCATGACCCTTTTCTCCAACAGCCTGGATCTCCCCAGGCTCTAC GAGGTACAAGCGTTACACCGGAGGGGATATAGCGCGGAAGACGACCGGCT GTCTTTATTCGCCCTAGTCCATGATGTGGGAGGATCGACGTTGGGAAGTA CCGGTAGTCGCTGCTGATGCTGCCGGCTTTGCCCAGCGTCTCTGTCGCTC GGTCCGACCGATGGAGGTCCGTTTGTGACCGTGTTAGTACTGGATGGCCC CAGTTGGAATTTCAAACGTGTTGAGCTCCCAAGGGGAAAACTGCCGAACT GTTGCTCACCGCATATTGTTAGAAAACGATCGTCGAACATACGCGGGGAG TTCGTGGGAGCGGAGCATCCCTGTTTGACTCTGGTTGCTACAGTACCGGG CCGCAACATACAACGAGCGATGCACAGTAGGGATCAGCATACCAGTTTCA AGATTGGACAGAGTCAGCAAAATGAGAAACGCAGCGATGGTGTTTGTTCG TGTCCCGGCCCTGAGATCCCCTCCCTCCCGTTTTGCGTGCGCTGCCGTCT CTTGCGCCGGGGATCCGTGGGTGACAGGTTTGGGACTTCTACCTGTACTG GGGAGACCCGGCGTTGCACCATTTCGTCGTCCTCGCGTTCGTGATCGGCA ACGCCGAAGTGATCTTGAAGGTGACGCTCCGCGAGATATCGCCGCGCCGG TCAGCTTCCGAGTTGCTTATCGGGTGCCCGCGGGGCACAAGGGGGCGTCG CCGTCTTGCGCCGCCGTGCGGCGTGCTTCGCGCTCCGCGGTGATTCATGT TTTCGTGTCCCGTTCCATCCCGTTTTTGTTCCGTCCCCGTTGGCGCTCTC CGAGCGTGCGCAGCGGGGGCTTTCATATCTGGCGGGCTGGCGCAACAATG CCGAGCATACCCAGGCTCCTAACCTGGTCGTTTTGTTGAGTGCTCGTCGC GTTCGTATCTTGGGGAAATTGAGACGAATTTCCGTTATTTCTCTCTCGGA AAATGTTTTCGGCAGGCCGAGGAGGCGAACCTCCCGGAGACGATGTGCAG GCTGACGGACGGCATGCGGTCGGTCGAGGAGCTGCGGGCGCTCTTGCGCA CGGCCAAGGATCTGATGCTCAACACCCCCAAGTCCTTCAGGAAGATCCTG CGATCCGCGCTGTACGGCAACCTCAGTCAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7917:2074..4903+

>mRNA_H-canaliculatus_M_contigs7917.2.1 ID=mRNA_H-canaliculatus_M_contigs7917.2.1|Name=mRNA_H-canaliculatus_M_contigs7917.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=900bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7917:2074..4903+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAGACAGCTGCTGCGCAAGGCTGGCTTCGTACCTGCGTCCTTGCGCAA
AGACGTCTGGAGGCTGCTTATCCTTGGTCGCGTTGAGGCGGCAGCCTTGG
GCGACGATAGGGCGGCGGAAGGTGTTCTTGACCTGGATGTAGCGATATTG
TCGACGGAGCTGGACTTGGAGAACCAACGGGTTGTGCGGGTTGACGTCGA
GAGGACGAGGACCTCGTTGGAGCAGTTCAAGAGGCCCAGGGTCAAGAACA
TGCTGGCGCGGGTGCTGACACATTTTTGCAAGACCCACGGCCTTGGGTAT
AAGCAGGCAAGCACAGCTCGCCGCCGAACGTGCATGCATCCTGGCGGAAT
GCACGAGGTCCTCGCCCCTTTCGTTGCTCTCTCTGACCCGGAGCTGCCCA
CGTCGGATATTTCTCTCTGCTACGGCGCCTTCATCAGGCGCTTTCTCCCC
TACGCTTTCAACAAGGACGAAGAGTTCCTCTCCTTGCAGATCTGCTTCAG
GCTCTTCCGCCTGTTGCTTCTCTACCATCACCCTCGGCTGTGTCGATTCC
TGGATCAGTACCAGCTGCAGCCGGAGCTGTATGCGACGCCGTGGTTCATG
ACCCTTTTCTCCAACAGCCTGGATCTCCCCAGGCTCTACGAGGTTTGGGA
CTTCTACCTGTACTGGGGAGACCCGGCGTTGCACCATTTCGTCGTCCTCG
CGTTCGTGATCGGCAACGCCGAAGTGATCTTGAAGGCCGAGGAGGCGAAC
CTCCCGGAGACGATGTGCAGGCTGACGGACGGCATGCGGTCGGTCGAGGA
GCTGCGGGCGCTCTTGCGCACGGCCAAGGATCTGATGCTCAACACCCCCA
AGTCCTTCAGGAAGATCCTGCGATCCGCGCTGTACGGCAACCTCAGTCAG
back to top