mRNA_H-canaliculatus_M_contigs79.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs79.3.1
Unique NamemRNA_H-canaliculatus_M_contigs79.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs79.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P7_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 9.190e-78
Identity = 127/151 (84.11%), Postives = 140/151 (92.72%), Query Frame = 1 
Query:    1 QGFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAE--DGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSLRKILE-KGQLQPD 444
            QGFLNMA+ARR+MGRNSVSVLDTREEY+AEVTI+IE +  +GRLQ S+SMFSRNRVE  GSAVV+RDGSLRQRGGG AHVEIEESLLQPDQ+APVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRI+ L+K+LE KGQ+  D
Sbjct:   30 QGFLNMARARRSMGRNSVSVLDTREEYAAEVTIAIEEDTSEGRLQESRSMFSRNRVEPAGSAVVIRDGSLRQRGGGGAHVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRIIHLQKMLEAKGQMPKD 180
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BLAST of mRNA_H-canaliculatus_M_contigs79.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYK8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.910e-15
Identity = 56/153 (36.60%), Postives = 88/153 (57.52%), Query Frame = 1 
Query:    1 QGFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQ---PDQEAP---VRG----DSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRI-LSLRKILEK 426
            +GFLN+ KAR++MGRN++S L+ RE   A+V +     D   +    M      E PG AV  ++G++R+RG G     I+E  +    PD+ A    V+G    +++ LF  LVPPP+RK+K +F   V++ + A+N+A  I L+ R+I  K
Sbjct:   39 KGFLNITKARQSMGRNALSALNCRELVDAQVRV-----DATHEEDAGMLWERHRESPG-AVASQNGAVRRRGAGGLSGPIDEDTVSSHTPDEPAADDAVQGAAQKNTLMLFGGLVPPPMRKAKADFALAVEHCIAAANVAQSIALAEREIRAK 185
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BLAST of mRNA_H-canaliculatus_M_contigs79.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H454_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.210e-13
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 1 
Query:    1 QGFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSLRKIL 420
            +GFLNMAKAR+++GR S++ LD RE   A+ TI    +   +    S    + +  P       + +LR+RG G  + +  E +    + A    D M LF  LVPPP+R++ + FT+ +++ V A+NLA +I+   K L
Sbjct:   32 KGFLNMAKARQSLGRGSLTALDCRENVCAQFTIDAHTDCDDIWRRHS----DTLNAP------EEKALRRRGAGG-NGKTNEDIQSVSEGAEDHNDPMLLFGGLVPPPMRRAGQEFTAAIEHIVTAANLAAKIIESEKEL 160
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BLAST of mRNA_H-canaliculatus_M_contigs79.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.050e-10
Identity = 45/139 (32.37%), Postives = 77/139 (55.40%), Query Frame = 1 
Query:    1 QGFLNMAKARRTMGRNSVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGS--LRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSLR 411
            +GFLN+ KAR++MGR +++ LD REE  A  ++  +++  ++    ++    R       V  R G+  LR+RG      +  E+    D+E   R D + LF  LVPP LR+++ +F   +D+ + A+N+ HR + LR
Sbjct:   41 RGFLNVTKARQSMGRGALTALDCREEMVASFSLD-QSDVSQVDEQSALILWRRFRR----VASRSGAKTLRRRGSTPPSSDEPENTSVDDREE-AREDPVLLFGGLVPPTLRRAQADFQVALDFYISAANVIHRAMQLR 173
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BLAST of mRNA_H-canaliculatus_M_contigs79.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.900e-10
Identity = 52/160 (32.50%), Postives = 75/160 (46.88%), Query Frame = 1 
Query:    1 QGFLNMAKARRTMGRNS----VSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVELPGSAVVMRDGSLRQRGGGAAHVEIEESLLQPDQEAPVRG--------------DSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRILSL-RKILE 423
            QGF NM KAR   G  +    ++VLDTREE+ A VT+ +  +D     ++ + +   ++LP      R G+          V    SL Q +                     DSM LF  LVPP LRK+K+NF+S +DY   A+ L  R+  L R +L+
Sbjct:   49 QGFFNMTKARLAAGGGAHSAGITVLDTREEFHAAVTVELLDKDPDASPARELRA---LKLPAGHAFQRAGNDDAPHSSGGSVNGSSSLRQRNHAGSXXXXXXXXXXXXXAAGKDSMQLFGGLVPPALRKAKRNFSSALDYVFLAAELTQRVALLYRAVLQ 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs79.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized9.190e-7884.11protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.910e-1536.60protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.210e-1334.29protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical1.050e-1032.37protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized2.900e-1032.50protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs79contigH-canaliculatus_M_contigs79:17462..18619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002530.1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854124.2282104-CDS-H-canaliculatus_M_contigs79:17461..175591696854124.2282104-CDS-H-canaliculatus_M_contigs79:17461..17559Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs79 17462..17559 -
1696854124.240153-CDS-H-canaliculatus_M_contigs79:18124..183751696854124.240153-CDS-H-canaliculatus_M_contigs79:18124..18375Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs79 18125..18375 -
1696854124.2507305-CDS-H-canaliculatus_M_contigs79:18515..186041696854124.2507305-CDS-H-canaliculatus_M_contigs79:18515..18604Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs79 18516..18604 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854124.2605355-UTR-H-canaliculatus_M_contigs79:18604..186191696854124.2605355-UTR-H-canaliculatus_M_contigs79:18604..18619Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs79 18605..18619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs79.3.1prot_H-canaliculatus_M_contigs79.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs79 17462..18604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs79.3.1

>prot_H-canaliculatus_M_contigs79.3.1 ID=prot_H-canaliculatus_M_contigs79.3.1|Name=mRNA_H-canaliculatus_M_contigs79.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=146bp
MAKARRTMGRNSVSVLDTREEYSAEVTISIEAEDGRLQGSKSMFSRNRVE
LPGSAVVMRDGSLRQRGGGAAHVEIEESLLQPDQEAPVRGDSMSLFATLV
PPPLRKSKKNFTSVVDYAVEASNLAHRILSLRKILEKGQLQPDSS*
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mRNA from alignment at H-canaliculatus_M_contigs79:17462..18619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs79.3.1 ID=mRNA_H-canaliculatus_M_contigs79.3.1|Name=mRNA_H-canaliculatus_M_contigs79.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1158bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs79:17462..18619- (Hapterophycus canaliculatus Oshoro7m male)
CAGGGCTTCTTGAATATGGCCAAGGCAAGGAGGACTATGGGTCGAAACTC
CGTGAGTGTACTGGATACAAGAGAGGAATACTCCGCTGAGGTAACGATTT
CCATGTGAGTGTTGCGACCCTCTGTGTTGTGATTACCACAAGAAAAAGCA
TGTTCCAGCGAGTTCGAAAGTGCAGTCTCTCTTCACAACGGTAATGAGCT
GTTTCTGCTGTTCTTTCATTTACCATGTCGTGTCCCCCAAACAGAGAAGC
CGAGGACGGACGACTGCAGGGGTCTAAGAGTATGTTCTCGAGAAATAGAG
TCGAGCTCCCAGGGTCTGCAGTAGTTATGCGGGACGGAAGCCTGAGACAA
CGCGGGGGAGGGGCGGCGCACGTCGAAATCGAAGAGTCTCTGTTGCAACC
AGACCAAGAGGCCCCTGTCCGAGGAGATTCGATGAGCTTGTTCGCAACAC
TGGTTCCGCCGCCCTTGCGCAAATCGAAGAAGAATTTCACCTCTGGTAAG
CCTTCCTCTCGCGGGTATTTGCGCGATGTATGATGTGCAAGAGTAGACCA
ACAGAGAGGGATAGGTGGAAGGGTTTCGGTGCATTTTCTGTGGAAAAGCG
GCTAGAGCAGTTGCGGTTTCCAAGATTGATCAGATGAAAATACTTTCAGA
AACGATGCTATCATGGTTAATTGTGGAAAGGCAAGGCAAGCCAAGGCCGA
CGAGACCGAGGGGACCGACTGACCCCACATACATGCATCAACCCCACCAC
CACGCCATGAAAATAAGCTTCACGTACGAAGTATTCGAAGTTGCGTTTAT
CGTCTTCGGCAAGTCGGAAGACACGACTCCCTTCACAAACCCGTTTGGGT
TGTGAGCGAGATGCCGCGATTTGTTCAAGAGATAAGGGAGTATGAACACT
CCGAACTGCAAACGTTAAACATGCCTTCGTCAGCTCGAAACTGTTCCCTC
CTGAGTTTCATTTGGGGGAGCAAAACTCCGGAAAGCTTTTGCACCGTTCG
CTGCACTTGACCAACGACACCATTCGTCCCCGCTGCTCCCATCGGTTAAA
CTTCACACAGTTGTAGACTACGCAGTGGAGGCGTCAAATCTTGCACATCG
CATCCTCTCTCTCCGGAAAATATTGGAGAAAGGACAGCTTCAGCCGGATT
CAAGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs79:17462..18619-

>mRNA_H-canaliculatus_M_contigs79.3.1 ID=mRNA_H-canaliculatus_M_contigs79.3.1|Name=mRNA_H-canaliculatus_M_contigs79.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs79:17462..18619- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCAAGGCAAGGAGGACTATGGGTCGAAACTCCGTGAGTGTACTGGA
TACAAGAGAGGAATACTCCGCTGAGGTAACGATTTCCATAGAAGCCGAGG
ACGGACGACTGCAGGGGTCTAAGAGTATGTTCTCGAGAAATAGAGTCGAG
CTCCCAGGGTCTGCAGTAGTTATGCGGGACGGAAGCCTGAGACAACGCGG
GGGAGGGGCGGCGCACGTCGAAATCGAAGAGTCTCTGTTGCAACCAGACC
AAGAGGCCCCTGTCCGAGGAGATTCGATGAGCTTGTTCGCAACACTGGTT
CCGCCGCCCTTGCGCAAATCGAAGAAGAATTTCACCTCTGTTGTAGACTA
CGCAGTGGAGGCGTCAAATCTTGCACATCGCATCCTCTCTCTCCGGAAAA
TATTGGAGAAAGGACAGCTTCAGCCGGATTCAAGTTGA
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