mRNA_H-canaliculatus_M_contigs7826.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7826.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7826.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7826.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H0_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 6.840e-21
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 RELLRQMTRIFTTPSELLPVADSAANG-RGEGLGPCLSINVLCRKRELERIATENKTWAKH 180
            R+LLRQMTRIFTTPS LLPV DSA  G RGEGLG CLSINVLCRKRELERIA ENKTW ++
Sbjct:   25 RDLLRQMTRIFTTPSALLPVHDSADGGSRGEGLGRCLSINVLCRKRELERIAMENKTWVRY 85
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BLAST of mRNA_H-canaliculatus_M_contigs7826.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.420e-17
Identity = 45/54 (83.33%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   16 QMTRIFTTPSELLPVADSAANG-RGEGLGPCLSINVLCRKRELERIATENKTWA 174
            QMTRIFTTPS LLPV DSA  G RG GLG CLSINVLCRKRELERI  ENKTWA
Sbjct:   57 QMTRIFTTPSTLLPVHDSANGGSRGGGLGRCLSINVLCRKRELERIVMENKTWA 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7826.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.840e-2181.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.420e-1783.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7826contigH-canaliculatus_M_contigs7826:125..2152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000680.1
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854119.0811942-UTR-H-canaliculatus_M_contigs7826:124..1421696854119.0811942-UTR-H-canaliculatus_M_contigs7826:124..142Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7826 125..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854119.1007247-CDS-H-canaliculatus_M_contigs7826:142..2951696854119.1007247-CDS-H-canaliculatus_M_contigs7826:142..295Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7826 143..295 +
1696854119.1160004-CDS-H-canaliculatus_M_contigs7826:1000..10961696854119.1160004-CDS-H-canaliculatus_M_contigs7826:1000..1096Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7826 1001..1096 +
1696854119.1270401-CDS-H-canaliculatus_M_contigs7826:1606..16781696854119.1270401-CDS-H-canaliculatus_M_contigs7826:1606..1678Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7826 1607..1678 +
1696854119.1368506-CDS-H-canaliculatus_M_contigs7826:2002..21521696854119.1368506-CDS-H-canaliculatus_M_contigs7826:2002..2152Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7826 2003..2152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7826.1.1prot_H-canaliculatus_M_contigs7826.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7826 143..2152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7826.1.1

>prot_H-canaliculatus_M_contigs7826.1.1 ID=prot_H-canaliculatus_M_contigs7826.1.1|Name=mRNA_H-canaliculatus_M_contigs7826.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=157bp
MTRIFTTPSELLPVADSAANGRGEGLGPCLSINVLCRKRELERIATENKT
WAKHLQEVSSSYNVDVWERDRKANKKVMERLRTVRYVKEKNNPEEYSRRG
VRRLRKQVERTRGQAFEAGCSAVPCKFRRKHSATRKRVGKDGDRSGKIHP
RQRQRSK
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mRNA from alignment at H-canaliculatus_M_contigs7826:125..2152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7826.1.1 ID=mRNA_H-canaliculatus_M_contigs7826.1.1|Name=mRNA_H-canaliculatus_M_contigs7826.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2028bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7826:125..2152+ (Hapterophycus canaliculatus Oshoro7m male)
AGAGAATTGTTGAGGCAGATGACGAGAATATTCACGACTCCTTCAGAGCT
TCTCCCTGTTGCCGACTCAGCCGCCAACGGTCGGGGGGAAGGTCTTGGAC
CGTGCTTGAGCATCAACGTGCTGTGCCGGAAAAGAGAGCTCGAGCGTATC
GCAACCGAAAATAAGACCTGGGTGAGTAACGGCAGAGGAAGTGATGCAAA
AAATGCAGGGCAGGTAACGCAAAGAGACTGGTGAAAGTACCCACTTTGCC
GGACTTTAATGTGCAGTAGTCAAGCGAACGGAGCTGTTGGGATCTCACGG
GTTGTAGTGTGCGAGTTGGCCATGCAGTCGAGAATGACGGAGTGCGATAT
TGGTTCTTCAAGGAGGAGAAGTCGGATGGAGAGTGTTGCGGAACTCTCCG
CACGTAAACAACAGGTTAGCTCAAAGCAGAAACAGCGGGAGTCCACGGAT
GTACCGCATACGCGCGTTCAGATTACATGCACCACACACGACAAAGTGGT
TCGACGGCGTTCACAGTCACCCATCTGTCGAGCGCCCATACTAATCTGTG
CTTGGATTGGAGCGTTCACACGTTTCATGCGTCTGGCTGCTAGGTTGTTT
GTAGCTGTAGATAAACGTTAGTTCCAGGGTACTCGCACGCTGCGAACGTC
GCTCAGATGTGCTCTGGTGCATCACTCTTCTCCCTCCCTGTTTTAATCAT
CTTCGTGAAACATTTGGAAACGAGCAGAAGTCAGCTCAAGCAGTCTCAAG
CAGTCTTCAGCCTCGAATCCGAAGCTTGTTTTTACTCTTGTTGTTCATTG
ATCCCTCAACTCGCCAATAACGCTAGCCCCTTGGGACGTTCACAACACTT
GGCGTTGTGCTATCCCTCGTTCGAAGGCAAAGCACCTGCAAGAGGTGTCT
TCTAGCTACAACGTGGACGTGTGGGAGAGAGATCGGAAAGCCAACAAAAA
AGTTATGGAGCGGTTGAGGACGGTGAGGCGGCAGTGATGTTGAGGTTTTG
TCGTTATGTGTCTCACCTTAGTTTCTGCCCTTGTTTCGGTTGTTGTCATT
GTTGTCTTGTTTGATGATTGCTACTATGTGGTGTGTCACCACCGCCTCAG
CTTCTGCCGCTGCAGCTGCGGCTGCCGGTGATGCTGCTGCTCCTTCTTCG
GTGCTGCAGTTATGGGTGATGTTGTGATTTTGCTCTAAAATTGTGATTCT
ATCAGAATCCACTCGACGAAGCACCTTCACAGCGGTAATGCTAAAAGAGG
GAGCGAGTCCCTCCCTCTGCTTGGTACAGCGGTTTACTTGTCCGAGCAGG
CGTTTTTGCAATTGTTGTTTCAAAAACGTCAGAGGCTTACGTCCAAACCG
ATGTGGACCGATACGTAGCAGTTGTTTGCCACCGTACCTCTGTTGGATTT
GGTCTTCCCCGTTATACACTATTCACTGGCGCAAGGGAAGGCAGCTCAGT
TCACGCAAGACTGATCCTGCGTTCCCAAAAAGGTTCGCTACGTGAAAGAG
AAGAACAACCCAGAGGAATACAGCCGCAGAGGAGTCAGACGCCTAAGAAA
ACAGGTACTAACGAGTGTAGACAATCACGGACAACAACAATGAATGGATT
TCATTGAATAGTCGAGATGTAGACCAATCTGGTGATGACACGAAGTTCGG
GTATCCGATAGATGCGGGAGTCCTCGTTGTTGGCACCAGGCCGGAAAAGG
AGGCGGGGCTTTTCGGAAGTATATCACTCTCTCACCGTTTCCGTTATTCA
TGTGGAGGTCGTCGTCGTCGTTGCTTGCTGCTACTAGTGACGAGAGGAGA
AAGCAAGCAGTTGGTATTGAGCATTCCACGACCTCGCTGGACATGTCCGC
GAATGTCAAATCCCCGCCCCATGGTCAGGTAGAGCGCACAAGAGGTCAGG
CCTTCGAGGCGGGGTGCTCTGCGGTACCTTGCAAATTCCGTCGAAAACAC
AGCGCTACCAGGAAAAGGGTGGGAAAGGACGGCGATAGAAGCGGGAAAAT
TCACCCACGACAAAGGCAACGATCTAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7826:125..2152+

>mRNA_H-canaliculatus_M_contigs7826.1.1 ID=mRNA_H-canaliculatus_M_contigs7826.1.1|Name=mRNA_H-canaliculatus_M_contigs7826.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=471bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7826:125..2152+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGAGAATATTCACGACTCCTTCAGAGCTTCTCCCTGTTGCCGACTC
AGCCGCCAACGGTCGGGGGGAAGGTCTTGGACCGTGCTTGAGCATCAACG
TGCTGTGCCGGAAAAGAGAGCTCGAGCGTATCGCAACCGAAAATAAGACC
TGGGCAAAGCACCTGCAAGAGGTGTCTTCTAGCTACAACGTGGACGTGTG
GGAGAGAGATCGGAAAGCCAACAAAAAAGTTATGGAGCGGTTGAGGACGG
TTCGCTACGTGAAAGAGAAGAACAACCCAGAGGAATACAGCCGCAGAGGA
GTCAGACGCCTAAGAAAACAGGTAGAGCGCACAAGAGGTCAGGCCTTCGA
GGCGGGGTGCTCTGCGGTACCTTGCAAATTCCGTCGAAAACACAGCGCTA
CCAGGAAAAGGGTGGGAAAGGACGGCGATAGAAGCGGGAAAATTCACCCA
CGACAAAGGCAACGATCTAAG
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