mRNA_H-canaliculatus_M_contigs78230.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78230.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78230.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78230.1.1 vs.
Match: Similar (to ankyrin 3, epithelial isoform e isoform 19 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.670e-6
Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 1 
Query:   16 TPLHLAAARGERVTVKMLLQFGSDPTFCSSAHSS----RHSP-------------LDTAASLGHDDVVRAMCASIHHRATRKPAAKKSFMERIIKSILAVAVAVAAKFGQASCVDALVEAGADVEAKAWSSLTPSPIHLAARGNGSDA-IAALVRHGADVNSIGEKGRTPLHTA 483
            TP+HLAA  G+   V ML+  G+    C++  +S    R+ P             L   A  GH DV+  +         R+P      M  + +S    A+  AAK  Q   +DALVEAGAD+EA+    +  + +H+AA    S+A + AL+RHGA V+ I     TPL  A
Sbjct:  130 TPIHLAAKAGQAGIVGMLMDAGACADRCANEDASTWEQRYDPEYDWSGIRMTENALHFGAIGGHVDVIDEIIK-------RQPLT----MSSVAESTGYTALHYAAKHSQLGVIDALVEAGADLEAEGGLGVGTA-LHVAAEFPDSEATLLALLRHGAKVDPIRNGSETPLSVA 291
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BLAST of mRNA_H-canaliculatus_M_contigs78230.1.1 vs.
Match: Non-specific (serine/threonine protein kinase n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q8H0_TRIMR)

HSP 1 Score: 53.1 bits (126), Expect = 4.170e-5
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  298 SCVDALVEAGADVEAKAWSSL-TPSPIHLAARGNGSDAIAALVRHGADVNSIGEKGRTPLHTA 483
            +CV AL++AGADV A    S+   SP+H++A  N  DA  ALVRHGAD+ +    G TPL  A
Sbjct:   53 ACVQALIDAGADVNASTSPSVGAKSPLHISASRNELDACKALVRHGADLFARDADGNTPLQCA 115
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BLAST of mRNA_H-canaliculatus_M_contigs78230.1.1 vs.
Match: Ankyrin (repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.930e-5
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  295 ASCVDALVEAGADVEAKAWSSLTPSPIHLAARGNGSDA-IAALVRHGADVNSIGE-KGRTPLHTA 483
            AS +D LV AGA++EAK  +    +P+HLAAR  G+ A I AL RHGADV++     G TPLH A
Sbjct:   61 ASAIDLLVGAGANLEAKIAADAEATPLHLAARQAGNAAVIEALARHGADVHAQETPSGNTPLHVA 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78230.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Similar1.670e-633.33to ankyrin 3, epithelial isoform e isoform 19 n=1 ... [more]
Non-specific4.170e-549.21serine/threonine protein kinase n=1 Tax=Trichuris ... [more]
Ankyrin4.930e-552.31repeat domain protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78230contigH-canaliculatus_M_contigs78230:14..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1A4
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size483
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.47e-12
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size483
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.8554866-CDS-H-canaliculatus_M_contigs78230:13..4961696854118.8554866-CDS-H-canaliculatus_M_contigs78230:13..496Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78230 14..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78230.1.1prot_H-canaliculatus_M_contigs78230.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78230 14..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78230.1.1

>prot_H-canaliculatus_M_contigs78230.1.1 ID=prot_H-canaliculatus_M_contigs78230.1.1|Name=mRNA_H-canaliculatus_M_contigs78230.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=161bp
DVCHHTPLHLAAARGERVTVKMLLQFGSDPTFCSSAHSSRHSPLDTAASL
GHDDVVRAMCASIHHRATRKPAAKKSFMERIIKSILAVAVAVAAKFGQAS
CVDALVEAGADVEAKAWSSLTPSPIHLAARGNGSDAIAALVRHGADVNSI
GEKGRTPLHTA
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mRNA from alignment at H-canaliculatus_M_contigs78230:14..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78230.1.1 ID=mRNA_H-canaliculatus_M_contigs78230.1.1|Name=mRNA_H-canaliculatus_M_contigs78230.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=483bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78230:14..496+ (Hapterophycus canaliculatus Oshoro7m male)
GACGTCTGCCATCACACCCCTCTTCACCTAGCAGCCGCGAGAGGTGAGCG
CGTCACGGTGAAGATGTTGTTGCAGTTCGGCTCTGACCCAACCTTTTGCT
CGAGCGCGCACAGTTCCAGGCACTCGCCTCTCGACACCGCCGCTTCCTTG
GGGCACGACGACGTGGTTCGAGCGATGTGCGCCAGCATTCACCACAGAGC
GACGAGGAAACCAGCGGCGAAGAAATCCTTCATGGAGAGAATAATCAAGT
CGATCTTGGCTGTCGCCGTCGCCGTCGCCGCGAAGTTCGGCCAGGCGTCC
TGCGTCGATGCGCTTGTCGAGGCCGGGGCCGACGTCGAAGCCAAGGCTTG
GTCTTCTCTGACGCCGTCGCCCATCCACCTCGCCGCGAGAGGCAACGGCT
CCGACGCCATCGCCGCTCTCGTGCGGCATGGGGCCGACGTCAACAGCATT
GGGGAGAAAGGCCGCACCCCCTTGCACACGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78230:14..496+

>mRNA_H-canaliculatus_M_contigs78230.1.1 ID=mRNA_H-canaliculatus_M_contigs78230.1.1|Name=mRNA_H-canaliculatus_M_contigs78230.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=483bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78230:14..496+ (Hapterophycus canaliculatus Oshoro7m male)
GACGTCTGCCATCACACCCCTCTTCACCTAGCAGCCGCGAGAGGTGAGCG
CGTCACGGTGAAGATGTTGTTGCAGTTCGGCTCTGACCCAACCTTTTGCT
CGAGCGCGCACAGTTCCAGGCACTCGCCTCTCGACACCGCCGCTTCCTTG
GGGCACGACGACGTGGTTCGAGCGATGTGCGCCAGCATTCACCACAGAGC
GACGAGGAAACCAGCGGCGAAGAAATCCTTCATGGAGAGAATAATCAAGT
CGATCTTGGCTGTCGCCGTCGCCGTCGCCGCGAAGTTCGGCCAGGCGTCC
TGCGTCGATGCGCTTGTCGAGGCCGGGGCCGACGTCGAAGCCAAGGCTTG
GTCTTCTCTGACGCCGTCGCCCATCCACCTCGCCGCGAGAGGCAACGGCT
CCGACGCCATCGCCGCTCTCGTGCGGCATGGGGCCGACGTCAACAGCATT
GGGGAGAAAGGCCGCACCCCCTTGCACACGGCG
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