mRNA_H-canaliculatus_M_contigs78215.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78215.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78215.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Psychrobacter sp. KH172YL61 TaxID=2517899 RepID=A0A7U6KLE3_9GAMM)

HSP 1 Score: 320 bits (820), Expect = 1.600e-108
Identity = 148/166 (89.16%), Postives = 161/166 (96.99%), Query Frame = 1 
Query:    4 REEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            REEIERDLHACQ HRPRLAMVDS++GITNFHSPSDVIVDASMPAMIR+GG+MWG DGK+YDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFE+S+AG ARI D+++ EVLLE+RVE+GDIWRMCQTKDAPI+DWVKLAVRR
Sbjct:  103 REEIERDLHACQEHRPRLAMVDSAKGITNFHSPSDVIVDASMPAMIRSGGKMWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFESSDAGIARIVDVETDEVLLEKRVEKGDIWRMCQTKDAPIQDWVKLAVRR 268
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: Isocitrate (dehydrogenase [NADP] n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U6M1_9GAMM)

HSP 1 Score: 330 bits (845), Expect = 1.090e-106
Identity = 156/167 (93.41%), Postives = 161/167 (96.41%), Query Frame = 1 
Query:    1 KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            KREEIERDLHAC  HRPRLAMVDSS+GITNFHSPSDVIVDASMPAMIR+GG MWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFE  EAG ARITDI++GEVLLE+RVEEGDIWRMCQTKDAPIRDWVKLAVRR
Sbjct:  313 KREEIERDLHACLEHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRSGGLMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFETEEAGLARITDIETGEVLLERRVEEGDIWRMCQTKDAPIRDWVKLAVRR 479
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: NADP-dependent (isocitrate dehydrogenase (Fragment) n=1 Tax=Psychrobacter sp. TaxID=56811 RepID=A0A3C1GRX2_9GAMM)

HSP 1 Score: 316 bits (809), Expect = 2.670e-106
Identity = 146/165 (88.48%), Postives = 159/165 (96.36%), Query Frame = 1 
Query:    7 EEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            EEIERDLHACQVHRPRLAMVDS++GITNFHSPSDVIVDASMPAMIR+GG+MWG DGK+YDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEA+++GTARI D ++ EVL+EQ VE+GDIWRMCQTKD PI+DWVKLAVRR
Sbjct:   46 EEIERDLHACQVHRPRLAMVDSNKGITNFHSPSDVIVDASMPAMIRSGGKMWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEAADSGTARIVDEETDEVLMEQYVEKGDIWRMCQTKDEPIQDWVKLAVRR 210
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BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: Isocitrate (dehydrogenase [NADP] n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NPT1_9GAMM)

HSP 1 Score: 328 bits (841), Expect = 4.500e-106
Identity = 154/167 (92.22%), Postives = 160/167 (95.81%), Query Frame = 1 
Query:    1 KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            KREEIERDL ACQ HRP LAMVDSSRGITNFHSPSDVIVDASMPAMIR+GGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDP TMGTVPNVGLMAQKAEEYGSHDKTFE SE G ARITD+++GEVLLEQRVEEGDIWRMCQTKDAPI+DW+KLAVRR
Sbjct:  313 KREEIERDLRACQEHRPSLAMVDSSRGITNFHSPSDVIVDASMPAMIRSGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPVTMGTVPNVGLMAQKAEEYGSHDKTFETSEPGVARITDVETGEVLLEQRVEEGDIWRMCQTKDAPIQDWIKLAVRR 479
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: Isocitrate (dehydrogenase [NADP] n=24 Tax=Psychrobacter TaxID=497 RepID=A0A5A4WIZ7_9GAMM)

HSP 1 Score: 327 bits (837), Expect = 1.540e-105
Identity = 154/166 (92.77%), Postives = 160/166 (96.39%), Query Frame = 1 
Query:    4 REEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            REEIERDLHACQVHRPRLAMVDSS+GITNFHSPSDVIVDASMPAMIR GG+MWG DGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFE+S+ G ARI DIDSGEVLLEQRVE+GDIWRMCQTKD PI+DWVKLAVRR
Sbjct:  310 REEIERDLHACQVHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRNGGKMWGADGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFESSDNGIARIVDIDSGEVLLEQRVEKGDIWRMCQTKDDPIQDWVKLAVRR 475
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BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: NADP-dependent (isocitrate dehydrogenase n=2 Tax=Psychrobacter TaxID=497 RepID=UPI001D0CDCCD)

HSP 1 Score: 321 bits (823), Expect = 1.830e-103
Identity = 147/167 (88.02%), Postives = 160/167 (95.81%), Query Frame = 1 
Query:    1 KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            KREEIERDLHACQ HRPRLAMVDS++GITNFHSP+D+IVDASMPAMIR GG+MWG DGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFE+S++G ARI D+D+GEVLLEQ +E+GDIWRMCQ KDAPI+DWVKLAVRR
Sbjct:  309 KREEIERDLHACQEHRPRLAMVDSAKGITNFHSPNDIIVDASMPAMIRNGGKMWGADGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFESSDSGMARIVDVDTGEVLLEQHIEKGDIWRMCQVKDAPIQDWVKLAVRR 475
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: Isocitrate (dehydrogenase [NADP] n=17 Tax=Moraxellaceae TaxID=468 RepID=A0A1U6GJ91_9GAMM)

HSP 1 Score: 321 bits (822), Expect = 2.580e-103
Identity = 150/167 (89.82%), Postives = 160/167 (95.81%), Query Frame = 1 
Query:    1 KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            KREEIERDLHACQVHRPRLAMVDSS+GITNFHSPSDVIVDASMPAMIR+GG+MWG DGK+YDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEAS++G ARI D ++ EVLLEQRVE+GDIWRMCQ KD PI+DWVKLAVRR
Sbjct:  309 KREEIERDLHACQVHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRSGGKMWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASDSGMARIVDEETDEVLLEQRVEKGDIWRMCQVKDEPIQDWVKLAVRR 475
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: Isocitrate (dehydrogenase [NADP] n=82 Tax=root TaxID=1 RepID=X0QGJ8_9GAMM)

HSP 1 Score: 319 bits (817), Expect = 1.430e-102
Identity = 149/167 (89.22%), Postives = 159/167 (95.21%), Query Frame = 1 
Query:    1 KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            KREEIERDLHACQ HRPRLAMVDSS+GITNFHSPSDVIVDASMPAMIR+GG+MWG DGK+YDCKAVMPESTFARIYQEMINFCKWHGNFDP TMGTVPNVGLMAQKAEEYGSHDKTFE+S+AG ARI DID+ EVLLE+RVE+GDIWRMCQ KD PI+DWVKLAVRR
Sbjct:  308 KREEIERDLHACQEHRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRSGGKMWGADGKMYDCKAVMPESTFARIYQEMINFCKWHGNFDPKTMGTVPNVGLMAQKAEEYGSHDKTFESSDAGIARIVDIDTDEVLLEKRVEKGDIWRMCQVKDEPIQDWVKLAVRR 474
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: NADP-dependent (isocitrate dehydrogenase n=1 Tax=Glaciecola sp. XM2 TaxID=1914931 RepID=UPI001BDEC123)

HSP 1 Score: 318 bits (816), Expect = 2.270e-102
Identity = 148/167 (88.62%), Postives = 159/167 (95.21%), Query Frame = 1 
Query:    1 KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            KREEIERDLHACQ +RPRLAMVDSS+GITNFHSPSDVIVDASMPAMIR+GG+MWG DG  YDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFE++ AG ARI D+D+GEVLLEQR+E+GDIWRMCQTKD PI+DWVKLAVRR
Sbjct:  313 KREEIERDLHACQENRPRLAMVDSSKGITNFHSPSDVIVDASMPAMIRSGGKMWGADGNPYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFESASAGVARIVDVDTGEVLLEQRIEKGDIWRMCQTKDLPIQDWVKLAVRR 479
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Match: NADP-dependent (isocitrate dehydrogenase n=1 Tax=Psychrobacter jeotgali TaxID=179010 RepID=UPI00191B1BD7)

HSP 1 Score: 318 bits (814), Expect = 4.010e-102
Identity = 147/167 (88.02%), Postives = 160/167 (95.81%), Query Frame = 1 
Query:    1 KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTGGQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMCQTKDAPIRDWVKLAVRR 501
            +REEIE+DLHACQ HRPRLAMVDS++GITNFHSPSDVIVDASMPAMIR+GG+MWG DGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMA+KAEEYGSHDKTFE+SEAG ARI D+D+ EVL+EQRVE+GDIWRMCQ KD PI+DWVKLAVRR
Sbjct:  309 EREEIEQDLHACQEHRPRLAMVDSAKGITNFHSPSDVIVDASMPAMIRSGGKMWGADGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNVGLMAKKAEEYGSHDKTFESSEAGIARIVDVDTDEVLMEQRVEKGDIWRMCQVKDEPIQDWVKLAVRR 475
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78215.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.600e-10889.16protein n=1 Tax=Psychrobacter sp. KH172YL61 TaxID=... [more]
Isocitrate1.090e-10693.41dehydrogenase [NADP] n=1 Tax=Granulosicoccus sp. T... [more]
NADP-dependent2.670e-10688.48isocitrate dehydrogenase (Fragment) n=1 Tax=Psychr... [more]
Isocitrate4.500e-10692.22dehydrogenase [NADP] n=1 Tax=Granulosicoccus antar... [more]
Isocitrate1.540e-10592.77dehydrogenase [NADP] n=24 Tax=Psychrobacter TaxID=... [more]
NADP-dependent1.830e-10388.02isocitrate dehydrogenase n=2 Tax=Psychrobacter Tax... [more]
Isocitrate2.580e-10389.82dehydrogenase [NADP] n=17 Tax=Moraxellaceae TaxID=... [more]
Isocitrate1.430e-10289.22dehydrogenase [NADP] n=82 Tax=root TaxID=1 RepID=X... [more]
NADP-dependent2.270e-10288.62isocitrate dehydrogenase n=1 Tax=Glaciecola sp. XM... [more]
NADP-dependent4.010e-10288.02isocitrate dehydrogenase n=1 Tax=Psychrobacter jeo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78215contigH-canaliculatus_M_contigs78215:3..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1354303.M917_1724
Preferred nameicd
PFAMsIDH
Model size501
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00001,RC00084,RC00114,RC00626,RC02801
KEGG koko:K00031
KEGG ReactionR00267,R00268,R01899
KEGG Pathwayko00020,ko00480,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko04146,map00020,map00480,map00720,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map04146
KEGG ModuleM00009,M00010,M00173,M00740
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.24e-104
EggNOG OGsCOG2838@1|root,COG2838@2|Bacteria,1MV6Q@1224|Proteobacteria,1RPG4@1236|Gammaproteobacteria,3NKCF@468|Moraxellaceae
EC1.1.1.42
DescriptionIsocitrate dehydrogenase
Cds size501
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.614703-CDS-H-canaliculatus_M_contigs78215:2..5031696854118.614703-CDS-H-canaliculatus_M_contigs78215:2..503Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78215 3..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78215.1.1prot_H-canaliculatus_M_contigs78215.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78215 3..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78215.1.1

>prot_H-canaliculatus_M_contigs78215.1.1 ID=prot_H-canaliculatus_M_contigs78215.1.1|Name=mRNA_H-canaliculatus_M_contigs78215.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=167bp
KREEIERDLHACQVHRPRLAMVDSSRGITNFHSPSDVIVDASMPAMIRTG
GQMWGGDGKLYDCKAVMPESTFARIYQEMINFCKWHGNFDPTTMGTVPNV
GLMAQKAEEYGSHDKTFEASEAGTARITDIDSGEVLLEQRVEEGDIWRMC
QTKDAPIRDWVKLAVRR
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mRNA from alignment at H-canaliculatus_M_contigs78215:3..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78215.1.1 ID=mRNA_H-canaliculatus_M_contigs78215.1.1|Name=mRNA_H-canaliculatus_M_contigs78215.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78215:3..503+ (Hapterophycus canaliculatus Oshoro7m male)
AAACGTGAAGAGATAGAGCGTGATCTTCATGCTTGTCAGGTTCATCGGCC
GCGCCTTGCCATGGTCGACTCATCGCGTGGAATTACAAATTTCCATTCCC
CGAGTGATGTGATCGTCGATGCGTCAATGCCAGCCATGATCAGAACCGGT
GGGCAAATGTGGGGTGGTGACGGCAAATTGTATGATTGCAAAGCTGTTAT
GCCAGAATCAACATTTGCTCGCATCTACCAGGAGATGATTAATTTCTGCA
AATGGCATGGTAATTTTGACCCCACCACAATGGGAACTGTGCCAAACGTT
GGGCTAATGGCTCAAAAGGCAGAAGAATATGGGTCGCATGATAAAACGTT
TGAAGCCTCTGAAGCCGGAACTGCCCGTATTACAGATATCGACAGTGGTG
AGGTTTTGCTAGAACAGCGTGTGGAAGAAGGTGATATCTGGCGCATGTGT
CAGACTAAAGATGCACCTATTCGCGATTGGGTCAAGCTTGCAGTACGAAG
A
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78215:3..503+

>mRNA_H-canaliculatus_M_contigs78215.1.1 ID=mRNA_H-canaliculatus_M_contigs78215.1.1|Name=mRNA_H-canaliculatus_M_contigs78215.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78215:3..503+ (Hapterophycus canaliculatus Oshoro7m male)
AAACGTGAAGAGATAGAGCGTGATCTTCATGCTTGTCAGGTTCATCGGCC
GCGCCTTGCCATGGTCGACTCATCGCGTGGAATTACAAATTTCCATTCCC
CGAGTGATGTGATCGTCGATGCGTCAATGCCAGCCATGATCAGAACCGGT
GGGCAAATGTGGGGTGGTGACGGCAAATTGTATGATTGCAAAGCTGTTAT
GCCAGAATCAACATTTGCTCGCATCTACCAGGAGATGATTAATTTCTGCA
AATGGCATGGTAATTTTGACCCCACCACAATGGGAACTGTGCCAAACGTT
GGGCTAATGGCTCAAAAGGCAGAAGAATATGGGTCGCATGATAAAACGTT
TGAAGCCTCTGAAGCCGGAACTGCCCGTATTACAGATATCGACAGTGGTG
AGGTTTTGCTAGAACAGCGTGTGGAAGAAGGTGATATCTGGCGCATGTGT
CAGACTAAAGATGCACCTATTCGCGATTGGGTCAAGCTTGCAGTACGAAG
A
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