mRNA_H-canaliculatus_M_contigs78203.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78203.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78203.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSR0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.080e-13
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    7 GLAVPVQALRVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            G A+   ALRVNVGGKLLTNYLKEVVSYRQWNMMDEFEV
Sbjct:  303 GRALHKSALRVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 341
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP38_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.550e-10
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 IAGLAVPVQALRVNVGGKLLTNYLKEVVSYRQWNMMDEF 117
            I G A+     RVNVGGKLLTN+LKEVVSYRQWNMMDEF
Sbjct:  135 IDGKAIRRGIRRVNVGGKLLTNHLKEVVSYRQWNMMDEF 173
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEN8_9ARCH)

HSP 1 Score: 60.1 bits (144), Expect = 1.780e-9
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:   34 RVNVGGKLLTNYLKEVVSYRQWNMMDEF 117
            R+N+GGKLLTNYLKE+VSYRQWNMMDEF
Sbjct:  185 RINIGGKLLTNYLKELVSYRQWNMMDEF 212
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CIA8_SAPPC)

HSP 1 Score: 60.1 bits (144), Expect = 1.930e-9
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   34 RVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            R+NVGGKLLTNYLKE VSYRQWNMMD FE+
Sbjct:  142 RLNVGGKLLTNYLKECVSYRQWNMMDSFEI 171
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBM5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.400e-9
Identity = 23/30 (76.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   34 RVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            R+NVGGK+LTN+LKE++SYRQWNMMDEF +
Sbjct:   12 RINVGGKMLTNHLKELISYRQWNMMDEFAI 41
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCV0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.620e-9
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   34 RVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            R+NVGGKLLTNYLKE VSYRQWNMMD FE+
Sbjct:  144 RLNVGGKLLTNYLKECVSYRQWNMMDSFEL 173
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Actin-related (protein 6-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFS7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.640e-9
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 IAGLAVPVQALRVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            I G+A      R+NVGGKL+TNYLKE VSYRQWNMMD FE+
Sbjct:  132 IEGVAQLEAVRRLNVGGKLMTNYLKECVSYRQWNMMDSFEL 172
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDE1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.090e-9
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 IAGLAVPVQALRVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            I G+ VP    R+N+GGKLLTN LKEVVSYRQ+NMMDEF +
Sbjct:  197 IMGVPVPRATKRLNIGGKLLTNLLKEVVSYRQYNMMDEFRL 237
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Actin-related (protein 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWI5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.960e-9
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   34 RVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            RVNVGGKLLTN LKE VSYRQWNMMDEF++
Sbjct:  221 RVNVGGKLLTNLLKETVSYRQWNMMDEFQL 250
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BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6I4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.280e-8
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   34 RVNVGGKLLTNYLKEVVSYRQWNMMDEFEV 123
            R+NVGGKLLTNYLKE VS+RQWNMMD FE+
Sbjct:  147 RLNVGGKLLTNYLKECVSFRQWNMMDSFEL 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78203.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized8.080e-1387.18protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSR0... [more]
Hypothetical6.550e-1076.92protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Uncharacterized1.780e-989.29protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Uncharacterized1.930e-986.67protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Hypothetical2.400e-976.67protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]
Uncharacterized3.620e-986.67protein n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
Actin-related3.640e-968.29protein 6-like n=1 Tax=Achlya hypogyna TaxID=12027... [more]
Hypothetical5.090e-968.29protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Actin-related6.960e-986.67protein 6 n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
Uncharacterized1.280e-883.33protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78203contigH-canaliculatus_M_contigs78203:51..173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSR0
Preferred nameACTR6
PFAMsActin
Model size123
Max annot lvl2759|Eukaryota
KEGG koko:K11662
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034728,GO:0040029,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0070828,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0098687,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue1.32e-13
EggNOG OGsKOG0680@1|root,KOG0680@2759|Eukaryota
Descriptionchromatin remodeling
Cds size123
COG categoryS
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.4818833-CDS-H-canaliculatus_M_contigs78203:50..1731696854118.4818833-CDS-H-canaliculatus_M_contigs78203:50..173Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78203 51..173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78203.1.1prot_H-canaliculatus_M_contigs78203.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78203 51..173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78203.1.1

>prot_H-canaliculatus_M_contigs78203.1.1 ID=prot_H-canaliculatus_M_contigs78203.1.1|Name=mRNA_H-canaliculatus_M_contigs78203.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
IAGLAVPVQALRVNVGGKLLTNYLKEVVSYRQWNMMDEFEV
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mRNA from alignment at H-canaliculatus_M_contigs78203:51..173-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78203.1.1 ID=mRNA_H-canaliculatus_M_contigs78203.1.1|Name=mRNA_H-canaliculatus_M_contigs78203.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78203:51..173- (Hapterophycus canaliculatus Oshoro7m male)
ATTGCGGGCCTTGCTGTTCCGGTTCAGGCGCTGAGGGTGAACGTGGGCGG
GAAGTTGCTGACCAACTACCTGAAGGAGGTCGTCTCCTACCGGCAGTGGA
ATATGATGGATGAGTTTGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78203:51..173-

>mRNA_H-canaliculatus_M_contigs78203.1.1 ID=mRNA_H-canaliculatus_M_contigs78203.1.1|Name=mRNA_H-canaliculatus_M_contigs78203.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78203:51..173- (Hapterophycus canaliculatus Oshoro7m male)
ATTGCGGGCCTTGCTGTTCCGGTTCAGGCGCTGAGGGTGAACGTGGGCGG
GAAGTTGCTGACCAACTACCTGAAGGAGGTCGTCTCCTACCGGCAGTGGA
ATATGATGGATGAGTTTGAGGTG
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