mRNA_H-canaliculatus_M_contigs78190.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs78190.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs78190.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Tudor (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.280e-22
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRSRSPDRQRTSERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDLKKRYGDASASKR 315
            QVMKREREASQAVGKDYAARP SYKGSLSLKLDRYTQRRKSRSRSPDRQRTS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +LKKRYGDASASKR
Sbjct:  537 QVMKREREASQAVGKDYAARPASYKGSLSLKLDRYTQRRKSRSRSPDRQRTS-----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELKKRYGDASASKR 636

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Tudor (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.390e-20
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRSRSPDRQRTS 156
            QVMKREREASQAVGKDYAARP SYKGSLSLKLDRYTQRRKSRSRSPDRQRTS
Sbjct:  515 QVMKREREASQAVGKDYAARPASYKGSLSLKLDRYTQRRKSRSRSPDRQRTS 566

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Pre-mRNA-splicing (factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6Z5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.130e-12
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRSRSPDR 144
            +V KR+RE S A GKDYA RP SYKGSLSL LDRYT R+KSRSRSPDR
Sbjct:  411 EVTKRDRERSAAQGKDYAQRPASYKGSLSLALDRYTHRKKSRSRSPDR 458

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Tudor (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.050e-12
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRSRSPDRQR 150
            QV++ +R+AS AVGKDYA+RP SYKGSLSLK DR+T RRKS SRSPDR R
Sbjct:  255 QVVENDRKASTAVGKDYASRPTSYKGSLSLKADRFTVRRKSSSRSPDRAR 304

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FY12_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.420e-10
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRSRSPDR 144
            +V+KR + ++ A GKDYA RP SYKGSLSL +DR+T R+KSRSRSPDR
Sbjct:  102 EVLKRGQGSAAATGKDYAQRPASYKGSLSLTMDRFTHRKKSRSRSPDR 149

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Pre-mRNA-splicing (factor 38 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XEX5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.180e-9
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRS 129
            QV ++ER  ++AVG+DYAARP SYKGSLSLKLDRYT RR+SRS
Sbjct:  366 QVREKERRKAEAVGRDYAARPASYKGSLSLKLDRYTTRRRSRS 408

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Pre-mRNA-splicing (factor 38B (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQH6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.210e-9
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRS 129
            QV +RER  ++AVG+DYA+RP SYKGSLSLKLDR+T R++SRS
Sbjct:   41 QVRERERRKAEAVGRDYASRPASYKGSLSLKLDRWTTRKRSRS 83

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BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEB6_PHYPN)

HSP 1 Score: 60.1 bits (144), Expect = 6.840e-9
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRS 129
            QV +RER  ++AVG+DYA+RP SYKGSLSLKLDR+T R++SRS
Sbjct:   83 QVRERERRKAEAVGRDYASRPASYKGSLSLKLDRWTTRKRSRS 125

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Pre-mRNA-splicing (factor 38 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW49_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 7.630e-9
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRS 129
            QV ++ER  ++AVG+DYAARP SYKGSLSLKLDR+T RR+SRS
Sbjct:  387 QVREKERRKAEAVGRDYAARPASYKGSLSLKLDRFTTRRRSRS 429

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AYK9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-8
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1

Query:    1 QVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRS 129
            QV ++ER  ++AVGKDYAARP SYKGSLSLK DR+T R++SRS
Sbjct:   51 QVREQERRKAEAVGKDYAARPASYKGSLSLKQDRFTTRKRSRS 93

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs78190.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Tudor	1.280e-22	90.48	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Tudor	1.390e-20	98.08	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Pre-mRNA-splicing	8.130e-12	77.08	factor 38 n=1 Tax=Rhizochromulina marina TaxID=103...	[more]
Tudor	9.050e-12	74.00	domain-containing protein n=1 Tax=Tribonema minus ...	[more]
Hypothetical	4.420e-10	66.67	protein n=1 Tax=Florenciella parvula TaxID=236787 ...	[more]
Pre-mRNA-splicing	2.180e-9	74.42	factor 38 n=1 Tax=Pythium brassicum TaxID=1485010 ...	[more]
Pre-mRNA-splicing	3.210e-9	69.77	factor 38B (Fragment) n=1 Tax=Phytophthora palmivo...	[more]
Uncharacterized	6.840e-9	69.77	protein n=1 Tax=Phytophthora parasitica (strain IN...	[more]
Pre-mRNA-splicing	7.630e-9	72.09	factor 38 n=1 Tax=Globisporangium ultimum (strain ...	[more]
Uncharacterized	1.240e-8	69.77	protein n=3 Tax=Aphanomyces astaci TaxID=112090 Re...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs78190	contig	H-canaliculatus_M_contigs78190:117..434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7FPC2
Preferred name	PRPF38B
PFAMs	PRP38,PRP38_assoc
Model size	318
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12850
KEGG Pathway	ko03040,map03040
Hectar predicted targeting category	other localisation
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008380,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0010226,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0071011,GO:0071704,GO:0090304,GO:1901360,GO:1990904
Exons	1
Evalue	1.36e-20
EggNOG OGs	KOG2888@1\|root,KOG2888@2759\|Eukaryota
Description	RNA splicing
Cds size	312
COG category	O
BRITE	ko00000,ko00001,ko03041

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854118.3151073-UTR-H-canaliculatus_M_contigs78190:116..122	1696854118.3151073-UTR-H-canaliculatus_M_contigs78190:116..122	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs78190 117..122 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854118.3299227-CDS-H-canaliculatus_M_contigs78190:122..434	1696854118.3299227-CDS-H-canaliculatus_M_contigs78190:122..434	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs78190 123..434 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs78190.1.1	prot_H-canaliculatus_M_contigs78190.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs78190 123..434 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs78190:117..434+
coding sequence from alignment at H-canaliculatus_M_contigs78190:117..434+

protein sequence of mRNA_H-canaliculatus_M_contigs78190.1.1

>prot_H-canaliculatus_M_contigs78190.1.1 ID=prot_H-canaliculatus_M_contigs78190.1.1|Name=mRNA_H-canaliculatus_M_contigs78190.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=104bp
MKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKSRSRSPDRQRTS
ERGGGGGRSGGERQRAAEPSPPRRKAAPVVTAEELRRQQDLKKRYGDASA
SKR*

mRNA from alignment at H-canaliculatus_M_contigs78190:117..434+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs78190.1.1 ID=mRNA_H-canaliculatus_M_contigs78190.1.1|Name=mRNA_H-canaliculatus_M_contigs78190.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=318bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78190:117..434+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGATGAAGAGGGAACGGGAGGCTTCCCAGGCAGTGGGCAAGGATTA
CGCCGCGCGGCCGGTGTCTTACAAGGGGTCCCTCAGCCTCAAGCTGGACC
GTTACACCCAGCGGCGCAAGAGCCGCTCCAGGAGCCCCGACAGGCAGCGG
ACGTCCGAGCGCGGGGGCGGCGGCGGCAGGAGCGGGGGGGAGAGGCAACG
CGCGGCGGAGCCATCGCCGCCCCGGCGCAAGGCTGCTCCCGTCGTGACGG
CGGAGGAGCTGCGGAGGCAGCAAGATCTCAAGAAGAGATACGGGGACGCG
TCGGCTTCGAAGAGATGA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78190:117..434+

>mRNA_H-canaliculatus_M_contigs78190.1.1 ID=mRNA_H-canaliculatus_M_contigs78190.1.1|Name=mRNA_H-canaliculatus_M_contigs78190.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=312bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78190:117..434+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGAGGGAACGGGAGGCTTCCCAGGCAGTGGGCAAGGATTACGCCGC
GCGGCCGGTGTCTTACAAGGGGTCCCTCAGCCTCAAGCTGGACCGTTACA
CCCAGCGGCGCAAGAGCCGCTCCAGGAGCCCCGACAGGCAGCGGACGTCC
GAGCGCGGGGGCGGCGGCGGCAGGAGCGGGGGGGAGAGGCAACGCGCGGC
GGAGCCATCGCCGCCCCGGCGCAAGGCTGCTCCCGTCGTGACGGCGGAGG
AGCTGCGGAGGCAGCAAGATCTCAAGAAGAGATACGGGGACGCGTCGGCT
TCGAAGAGATGA