mRNA_H-canaliculatus_M_contigs7819.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7819.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7819.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7819.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P7_ECTSI)

HSP 1 Score: 437 bits (1124), Expect = 4.100e-142
Identity = 361/578 (62.46%), Postives = 405/578 (70.07%), Query Frame = 1 
Query:    1 IDLDDPSLEGAELARKKALSRAQAESQAGGYVPSSSAADDYLNALKVDSRKKQIQTQAKLQGKPVPPGEEPLLSASPPADEPVXXXXXXXXXXXXXXXXXXR--PQKRTSASWSIQNKADVYMASLKGIKVDLPEDNPYLKEQLLEE--LPQRLPPPXXXXXXVGPKMSYAERLKLAKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAV--AQDL-------------------------------------APKRLLEQEVPESALLGEDATQAKVMKVMDLLTEHKTAGLVGEERVSELRDSLVDARELLRAETYGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSIATTPENAETLRRCSALLQAHVHSSLGGRDLQALVEGLTSSLTIVTAQLLAGTAAGXXXXXXXXXXDRGEAAAAAAGEEKVPAYVGGVQSVGGVLSDMGVGEKPASFVPESEGRGGPEDGEGGGGWTAGSLGQEEKAVATKALGYLLKHRGGKGYGRGRVKGAEAEAMVAALAEVTEIMHEEMLEE 1605
            IDLDDP+LEGAELARKKALSRAQAE+QAGGYVPSSSAADDYLN+LK DS+KKQ +TQAKL+G+P+PP E PLLSASPP +                     R  PQKRT+ASWSIQNKAD YMASLKGIKV+L +DNPYLKE L+EE   P R PP XXX   +GP+MSYAE++KLAKG                              XXXXX      A+  A+ L                                     A +RLLEQ++P   L+ E  +QAK++K+MDLLTEHKTAGL GE+RVSELR SLVDARE LRAETYG SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          E+A  LRRCSALLQAHVHS L G+DLQALVEGL SSLTIVTAQ++ GTA  XXXXXXXXXX           +  VPAY GG+QSVGG LSDMGV +KPASF+PE EG     +G+G  GWT GSLG+EEKA A+KALGYLLKHRGGKGYGRG++ GA+AEAMVAALAEVTEIM EEM+EE
Sbjct:  212 IDLDDPTLEGAELARKKALSRAQAEAQAGGYVPSSSAADDYLNSLKADSQKKQKETQAKLRGEPLPPREGPLLSASPPTETATSDVPDKSAAPLSSGEDYERVKPQKRTAASWSIQNKADQYMASLKGIKVELADDNPYLKESLVEEPRQPVRRPPXXXXKPPLGPQMSYAEKMKLAKGAKAAGTATAAAPSSNVVAAPVATLPPATEAXXXXXPSSGSPALSYAEKLKQAQAQKAAAGNGVFPKSVPXXXXXXXXXXXXXXXAPASRRLLEQDMPSGGLVDEGDSQAKMVKLMDLLTEHKTAGLEGEDRVSELRHSLVDAREALRAETYGRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------EDAAILRRCSALLQAHVHSGLAGQDLQALVEGLASSLTIVTAQVVTGTAXXXXXXXXXXXXXXXXXXXX--DDTGVPAYAGGIQSVGGALSDMGVAKKPASFLPE-EG-----EGDGSAGWTGGSLGEEEKAAASKALGYLLKHRGGKGYGRGKMTGAQAEAMVAALAEVTEIMEEEMVEE 771
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7819.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.100e-14262.46protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7819contigH-canaliculatus_M_contigs7819:1950..5182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1608
Hectar predicted targeting categoryother localisation
Exons4
Cds size1608
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.2271063-CDS-H-canaliculatus_M_contigs7819:1949..28191696854118.2271063-CDS-H-canaliculatus_M_contigs7819:1949..2819Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7819 1950..2819 -
1696854118.2464986-CDS-H-canaliculatus_M_contigs7819:3277..37511696854118.2464986-CDS-H-canaliculatus_M_contigs7819:3277..3751Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7819 3278..3751 -
1696854118.2591777-CDS-H-canaliculatus_M_contigs7819:4258..44421696854118.2591777-CDS-H-canaliculatus_M_contigs7819:4258..4442Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7819 4259..4442 -
1696854118.2707722-CDS-H-canaliculatus_M_contigs7819:5102..51821696854118.2707722-CDS-H-canaliculatus_M_contigs7819:5102..5182Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7819 5103..5182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7819.2.1prot_H-canaliculatus_M_contigs7819.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7819 1950..5182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7819.2.1

>prot_H-canaliculatus_M_contigs7819.2.1 ID=prot_H-canaliculatus_M_contigs7819.2.1|Name=mRNA_H-canaliculatus_M_contigs7819.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=536bp
IDLDDPSLEGAELARKKALSRAQAESQAGGYVPSSSAADDYLNALKVDSR
KKQIQTQAKLQGKPVPPGEEPLLSASPPADEPVAPPEEPEPLPSPEEYEP
VRPQKRTSASWSIQNKADVYMASLKGIKVDLPEDNPYLKEQLLEELPQRL
PPPPPPKPPVGPKMSYAERLKLAKGAKGGEPGAAAAAAAASPPAAAPEAP
PSPESPKPPAAAASAAAVAQDLAPKRLLEQEVPESALLGEDATQAKVMKV
MDLLTEHKTAGLVGEERVSELRDSLVDARELLRAETYGSSAAGSAAATPP
RPTRPPPPMPSSLPPPPPLPPSPASPPPVQQQQQQQQQQQQQQQPPAPSI
ATTPENAETLRRCSALLQAHVHSSLGGRDLQALVEGLTSSLTIVTAQLLA
GTAAGGGAGGVGSGSDRGEAAAAAAGEEKVPAYVGGVQSVGGVLSDMGVG
EKPASFVPESEGRGGPEDGEGGGGWTAGSLGQEEKAVATKALGYLLKHRG
GKGYGRGRVKGAEAEAMVAALAEVTEIMHEEMLEE*
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mRNA from alignment at H-canaliculatus_M_contigs7819:1950..5182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7819.2.1 ID=mRNA_H-canaliculatus_M_contigs7819.2.1|Name=mRNA_H-canaliculatus_M_contigs7819.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3233bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7819:1950..5182- (Hapterophycus canaliculatus Oshoro7m male)
ATCGACCTAGACGACCCGAGCCTGGAGGGCGCCGAGCTCGCGAGGAAGAA
AGCCCTTAGTCGGGCGCAGGCGGAGTCACAGTGAGTCAGCCGGGGTGGAC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGACGT
GTTATCGTTTTCTTCCCGTGGGCGGGCGAGAGACCGCTGCGGTTAGTCCA
GCGCAGAGTTGGCAGATCTTGTGTCTTTTGGTCGCTCACGGTGTCTCAAG
TTCCGATGGTGCTTTTCGCGCTGCTGAATGTGTCGGCGTAAGGTGGCTGG
AGAGCAGGCCAGAGTCGAAGAAGGAACCGGTCCACCACTCGTCTGCGCCC
GTTGGTTTTGAATGTGTTATCCTCTGCTGTCGTGCTTGTAGCATAGGAGG
ACACGCGTGGAGGGCGTCTCCCTGTGCGGCGGCAGATGCTTGGTGGCGCA
TGGCCTGATGCCTAGAGCTCCTAACAGCCTGACGGCGATACCGCGCTCTG
TATTCGTCCCCGCCGCCATGTCTCGGTTGTATGTTCTTCTCCTGGCTGCT
GCGTTTCGAATTGCCGAGACGGGGGATAATCCTCACGAGGACGTTTGCCT
CTCCGAGGTGTGGTCTTCCTTTCACGACCGCTTTACTCACCCAACCCTTC
GTGCTGTAAACCGCTGTCGTTTCTCTTGGCTGCCCACGGCCGGCGGCCCT
CCTGTCCTCGACCCTCGATGGGGTTCTGCTACTGCGGCAGGGCCGGTGGG
TATGTGCCCAGCTCGAGCGCTGCCGACGACTACCTGAACGCCCTCAAGGT
CGACTCCCGAAAAAAGCAGATCCAGACGCAGGCCAAGCTACAAGGAAAAC
CCGTTCCACCGGGAGAGGAGCCTCTCCTGAGTGCGTCCCCTCCGGCCGAC
GAGCCTGTGGCGCCGCCAGAGGAGGTGATTAGCCCGTAAGGTTTGCGCAG
CCGAGGGCGTATGTAGTATCATAGCTTTCTTTGGTTTATCTTTCTTTGGT
GTTCGGACGATCTTTCTTGTTTTCGGTAGGCGGCATCCTGAAGTTTTTAC
GCTATGCTCGTAGAGCCTCCCCTCCATGGTAATCGTGCTCGGCATTGCTG
CTCCCTTCGTGCTAGCTTCCTCCAGGCTGTTGATTTTGGTCGAAGACCAT
CGAGACTCTGCGCTCCACTTAACCTAGAGCCTTGCTCCTCAAGCCGATAT
CATACATGGATAGGGTCGCTTTGCTTTGTCCTATCATTGATTGTGCCACA
TACGACAAGCTTCGATAGACAATAATTCCAATGACTTCAACCGCATATCT
GTAGCCCAGACGTACCGCATTCCAGGCTTTCTCTTTTCGTTTCTCTAGAC
CTCAAGCCTGTCTATCGGTGCCTCAACCCCCTCCTCCCCTCTCCCCTCCC
ATCCCCTACCCGCTTTGCCCTCTGTGTCCAGCCTGAGCCCTTGCCGTCCC
CCGAGGAATACGAGCCAGTCAGGCCGCAGAAGCGCACGTCCGCCTCGTGG
AGCATCCAGAACAAGGCCGACGTCTACATGGCCTCTCTCAAGGGGATTAA
GGTCGACCTTCCGGAGGACAATCCTTACCTGAAGGAGCAGTTGCTGGAAG
AGCTCCCGCAGCGGCTGCCACCGCCCCCACCGCCCAAGCCCCCGGTCGGG
CCCAAGATGAGCTACGCCGAGCGACTCAAGCTCGCGAAGGGCGCTAAGGG
TGGAGAGCCTGGCGCCGCCGCCGCCGCCGCTGCCGCGTCCCCTCCCGCGG
CAGCTCCGGAGGCGCCCCCCTCTCCTGAATCGCCGAAGCCGCCCGCAGCT
GCTGCTTCCGCTGCTGCTGTTGCCCAGGATCTCGCACCGAAAAGGCTGTT
GGAGCAAGAGGTCCCCGAGAGCGCTCTGTTGGGGGAGGATGCAACGCAGG
CTAAGGTGAGAGAGAGAGAGAGATTGTTTTGATAGCATCGTTTCGTCTTG
TTGTTTCGGAAAGAATAGCAGTGTTCTTTGCCGTCATACAAAGAGAACCA
CGGGACTGCTGTTGCTACGGAAGTCGGTTCTTCTCTGTCGTGTCTTGTCT
GGGCTCAGTCAGGAGCATGTGCCTGCGAAACGGACGCTTCTTTGCGTTCT
CGTTTTCAATCTAGGAGGACGTGAGAGGTGCGGACCCCTCCCGGGCTCTA
ACGGAAACGGCGGAGCCCCCTTACCTCCCTTGTTTTCGTCGGTGTGCGCG
AAAGCTATGTCGTGAGAGGCCAAACCCTGATGTTTACGCATTTGAACTAC
CGCTTCTTTCTTGCGATCGACCCTTTCTTACGCGCCAGCCGTCCTCGCTG
CTCTTGGCGCGCACGTGTCAAAAACCCGCGAACAAAAACGCCTCTTTTTT
GCGCAACCAGCAGGTGATGAAGGTGATGGACCTGCTGACTGAGCACAAGA
CCGCCGGCCTCGTGGGCGAGGAGCGAGTCTCGGAGCTCCGCGACTCCCTC
GTCGACGCTCGCGAGCTCCTCCGGGCGGAGACCTACGGGAGCTCGGCGGC
TGGGTCTGCGGCGGCGACGCCGCCCCGGCCAACACGGCCACCCCCACCGA
TGCCATCATCTCTGCCGCCGCCGCCGCCGCTGCCGCCTTCACCAGCTTCG
CCTCCACCAGTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACCGCCGGCACCGTCGATAGCGACCACCCCGGAAAACGCGGAGA
CTCTCCGCCGCTGCAGCGCCCTGCTGCAGGCGCACGTACACTCGAGCCTC
GGCGGGCGGGACCTCCAGGCCCTCGTGGAGGGTCTGACGTCCTCGCTCAC
GATCGTCACGGCGCAGCTCTTGGCGGGCACCGCCGCGGGCGGCGGCGCCG
GAGGGGTCGGCTCCGGCTCCGACCGAGGAGAAGCAGCGGCGGCGGCAGCA
GGCGAGGAGAAGGTGCCGGCGTACGTGGGAGGGGTGCAGTCGGTGGGAGG
AGTCCTGTCGGACATGGGTGTGGGCGAAAAGCCGGCGTCGTTCGTGCCGG
AGAGCGAAGGGCGAGGGGGGCCGGAGGATGGGGAGGGCGGGGGGGGATGG
ACGGCCGGGAGCCTCGGGCAAGAAGAGAAGGCCGTCGCCACGAAGGCGCT
CGGCTACCTGCTCAAGCACCGTGGCGGTAAGGGTTACGGGAGAGGAAGGG
TGAAGGGGGCGGAGGCGGAGGCCATGGTGGCGGCGCTCGCGGAGGTGACG
GAGATTATGCACGAGGAGATGCTGGAAGAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7819:1950..5182-

>mRNA_H-canaliculatus_M_contigs7819.2.1 ID=mRNA_H-canaliculatus_M_contigs7819.2.1|Name=mRNA_H-canaliculatus_M_contigs7819.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1608bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7819:1950..5182- (Hapterophycus canaliculatus Oshoro7m male)
ATCGACCTAGACGACCCGAGCCTGGAGGGCGCCGAGCTCGCGAGGAAGAA
AGCCCTTAGTCGGGCGCAGGCGGAGTCACAGGCCGGTGGGTATGTGCCCA
GCTCGAGCGCTGCCGACGACTACCTGAACGCCCTCAAGGTCGACTCCCGA
AAAAAGCAGATCCAGACGCAGGCCAAGCTACAAGGAAAACCCGTTCCACC
GGGAGAGGAGCCTCTCCTGAGTGCGTCCCCTCCGGCCGACGAGCCTGTGG
CGCCGCCAGAGGAGCCTGAGCCCTTGCCGTCCCCCGAGGAATACGAGCCA
GTCAGGCCGCAGAAGCGCACGTCCGCCTCGTGGAGCATCCAGAACAAGGC
CGACGTCTACATGGCCTCTCTCAAGGGGATTAAGGTCGACCTTCCGGAGG
ACAATCCTTACCTGAAGGAGCAGTTGCTGGAAGAGCTCCCGCAGCGGCTG
CCACCGCCCCCACCGCCCAAGCCCCCGGTCGGGCCCAAGATGAGCTACGC
CGAGCGACTCAAGCTCGCGAAGGGCGCTAAGGGTGGAGAGCCTGGCGCCG
CCGCCGCCGCCGCTGCCGCGTCCCCTCCCGCGGCAGCTCCGGAGGCGCCC
CCCTCTCCTGAATCGCCGAAGCCGCCCGCAGCTGCTGCTTCCGCTGCTGC
TGTTGCCCAGGATCTCGCACCGAAAAGGCTGTTGGAGCAAGAGGTCCCCG
AGAGCGCTCTGTTGGGGGAGGATGCAACGCAGGCTAAGGTGATGAAGGTG
ATGGACCTGCTGACTGAGCACAAGACCGCCGGCCTCGTGGGCGAGGAGCG
AGTCTCGGAGCTCCGCGACTCCCTCGTCGACGCTCGCGAGCTCCTCCGGG
CGGAGACCTACGGGAGCTCGGCGGCTGGGTCTGCGGCGGCGACGCCGCCC
CGGCCAACACGGCCACCCCCACCGATGCCATCATCTCTGCCGCCGCCGCC
GCCGCTGCCGCCTTCACCAGCTTCGCCTCCACCAGTCCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCCGGCACCGTCGATA
GCGACCACCCCGGAAAACGCGGAGACTCTCCGCCGCTGCAGCGCCCTGCT
GCAGGCGCACGTACACTCGAGCCTCGGCGGGCGGGACCTCCAGGCCCTCG
TGGAGGGTCTGACGTCCTCGCTCACGATCGTCACGGCGCAGCTCTTGGCG
GGCACCGCCGCGGGCGGCGGCGCCGGAGGGGTCGGCTCCGGCTCCGACCG
AGGAGAAGCAGCGGCGGCGGCAGCAGGCGAGGAGAAGGTGCCGGCGTACG
TGGGAGGGGTGCAGTCGGTGGGAGGAGTCCTGTCGGACATGGGTGTGGGC
GAAAAGCCGGCGTCGTTCGTGCCGGAGAGCGAAGGGCGAGGGGGGCCGGA
GGATGGGGAGGGCGGGGGGGGATGGACGGCCGGGAGCCTCGGGCAAGAAG
AGAAGGCCGTCGCCACGAAGGCGCTCGGCTACCTGCTCAAGCACCGTGGC
GGTAAGGGTTACGGGAGAGGAAGGGTGAAGGGGGCGGAGGCGGAGGCCAT
GGTGGCGGCGCTCGCGGAGGTGACGGAGATTATGCACGAGGAGATGCTGG
AAGAGTGA
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