mRNA_H-canaliculatus_M_contigs78157.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78157.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78157.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: C2H2 (zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-6
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DN+ERWE N LTASD R+L TQW+G
Sbjct:  503 MDMWLEQADNIERWESNSLTASDRRVLITQWVG 535
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE05_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 8.970e-6
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DNLERWE   LTASD R+L TQW+G
Sbjct:    1 MDIWLEQSDNLERWETASLTASDRRVLITQWMG 33
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: HTH (CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y1_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.510e-5
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DNLERWE   LTASD R+L TQWIG
Sbjct:  761 MDMWLEQSDNLERWETAALTASDRRVLITQWIG 793
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: C2H2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL73_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DNLERWE   LTASD R+L TQWIG
Sbjct:  590 MDMWLEQSDNLERWETAALTASDRRVLITQWIG 622
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: C2H2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL6_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DNLERWE   LTASD R+L TQWIG
Sbjct:  598 MDMWLEQSDNLERWETAALTASDRRVLITQWIG 630
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU2_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            LD +L   DNLERWE   LTASD R+L TQW+G
Sbjct:   69 LDMWLEQSDNLERWETASLTASDRRVLITQWMG 101
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG03_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 1.990e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DNLERWE   LTASD R+L TQW+G
Sbjct:   69 MDVWLEQSDNLERWETASLTASDRRVLITQWMG 101
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 2.080e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +    DN+ERWE N LTASD R+L TQW+G
Sbjct:  383 MDMWWEQADNVERWESNSLTASDRRVLITQWVG 415
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2X8_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 2.370e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DNLERWE   LTASD R+L TQW+G
Sbjct:   69 MDIWLEQSDNLERWETASLTASDRRVLITQWMG 101
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M9_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 2.640e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 LDAFLLDGDNLERWEFNKLTASDCRILFTQWIG 99
            +D +L   DNLERWE   LTASD R+L TQW+G
Sbjct:   54 MDIWLEQSDNLERWETASLTASDRRVLITQWMG 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78157.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C2H22.310e-660.61zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized8.970e-660.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
HTH1.510e-563.64CENPB-type domain-containing protein n=2 Tax=Ectoc... [more]
C2H2-type1.520e-563.64domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
C2H2-type1.520e-563.64domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.520e-563.64protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.990e-560.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.080e-557.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.370e-560.61protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.640e-560.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78157contigH-canaliculatus_M_contigs78157:379..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRF1
PFAMsDDE_1
Model size114
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.79e-07
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854118.0359817-CDS-H-canaliculatus_M_contigs78157:378..4921696854118.0359817-CDS-H-canaliculatus_M_contigs78157:378..492Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78157 379..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78157.1.1prot_H-canaliculatus_M_contigs78157.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78157 379..492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78157.1.1

>prot_H-canaliculatus_M_contigs78157.1.1 ID=prot_H-canaliculatus_M_contigs78157.1.1|Name=mRNA_H-canaliculatus_M_contigs78157.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=38bp
LDAFLLDGDNLERWEFNKLTASDCRILFTQWIGRVPL*
back to top

mRNA from alignment at H-canaliculatus_M_contigs78157:379..492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78157.1.1 ID=mRNA_H-canaliculatus_M_contigs78157.1.1|Name=mRNA_H-canaliculatus_M_contigs78157.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=114bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78157:379..492+ (Hapterophycus canaliculatus Oshoro7m male)
CTTGATGCGTTTCTCCTGGACGGTGACAACCTAGAGCGGTGGGAGTTCAA
CAAGCTGACCGCGTCTGATTGTCGAATCTTGTTCACGCAGTGGATCGGCA
GAGTACCTCTCTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78157:379..492+

>mRNA_H-canaliculatus_M_contigs78157.1.1 ID=mRNA_H-canaliculatus_M_contigs78157.1.1|Name=mRNA_H-canaliculatus_M_contigs78157.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=114bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78157:379..492+ (Hapterophycus canaliculatus Oshoro7m male)
CTTGATGCGTTTCTCCTGGACGGTGACAACCTAGAGCGGTGGGAGTTCAA
CAAGCTGACCGCGTCTGATTGTCGAATCTTGTTCACGCAGTGGATCGGCA
GAGTACCTCTCTAA
back to top