mRNA_H-canaliculatus_M_contigs78155.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs78155.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs78155.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: Aldehyde-activating (protein n=1 Tax=Pelagicola marinus TaxID=2578117 RepID=A0A6A4RC84_9RHOB)

HSP 1 Score: 198 bits (504), Expect = 7.400e-63
Identity = 90/114 (78.95%), Postives = 100/114 (87.72%), Query Frame = 3

Query:  147 MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            MKKIKG+CLCG VSFEV NTFEKLFLCSCDQCRQITGSAFASNLFV I GFDW  G+D I+KYQ+P RDISKSFC+VCGAGVPW NG+ TKMIVPAG L+ PV+V ER+RIF +
Sbjct:    1 MKKIKGSCLCGVVSFEVTNTFEKLFLCSCDQCRQITGSAFASNLFVGIKGFDWLNGIDDIIKYQVPGRDISKSFCRVCGAGVPWANGNGTKMIVPAGSLNEPVNVVERIRIFAS 114

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: Uncharacterized (conserved protein n=1 Tax=Roseovarius tolerans TaxID=74031 RepID=A0A1H8D7V8_9RHOB)

HSP 1 Score: 194 bits (494), Expect = 6.730e-61
Identity = 91/114 (79.82%), Postives = 98/114 (85.96%), Query Frame = 3

Query:  147 MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            ++KIKG CLCGAVSF VINTFEKLFLCSCDQCRQITGSAFASNLFV I GFDW  G   IV YQ+P RDISKSFC+VCG+GVPW NGD TKMIVPAG LSAPV+V ERVRIF +
Sbjct:    9 VQKIKGGCLCGAVSFAVINTFEKLFLCSCDQCRQITGSAFASNLFVSIKGFDWLAGTGDIVSYQVPGRDISKSFCRVCGSGVPWPNGDGTKMIVPAGSLSAPVNVVERVRIFAS 122

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: GFA (family protein n=2 Tax=Pseudohalocynthiibacter TaxID=1759417 RepID=UPI001FF3A162)

HSP 1 Score: 194 bits (492), Expect = 1.350e-60
Identity = 88/114 (77.19%), Postives = 99/114 (86.84%), Query Frame = 3

Query:  147 MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            ++++ G CLCGAVSFEV+N FEKLFLCSCDQCRQITGSAFASNLFV I GFDW GGV  IV YQ+PERDISKSFC+VCG+GVPW NG+ TKMIVPAG L+ PV VAERVRIF +
Sbjct:    9 LRRVIGGCLCGAVSFEVVNAFEKLFLCSCDQCRQITGSAFASNLFVGIEGFDWLGGVGDIVNYQVPERDISKSFCRVCGSGVPWANGNGTKMIVPAGSLNRPVSVAERVRIFAS 122

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: Glutathione-dependent (formaldehyde-activating enzyme n=1 Tax=Roseovarius litorisediminis TaxID=1312363 RepID=A0A1Y5RJL2_9RHOB)

HSP 1 Score: 189 bits (481), Expect = 6.370e-59
Identity = 87/114 (76.32%), Postives = 96/114 (84.21%), Query Frame = 3

Query:  147 MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            ++KIKG CLCGAVSFEV+N FEKLFLCSCDQCRQITGSAFASNLF  I G DW  G D IV YQ+P RDISK+FC+VCG+GVPW NGD TKMIVPAG LS PV+V ERVRIF +
Sbjct:    9 VQKIKGGCLCGAVSFEVVNAFEKLFLCSCDQCRQITGSAFASNLFGGIEGLDWLAGADDIVSYQVPGRDISKTFCRVCGSGVPWANGDGTKMIVPAGSLSEPVNVVERVRIFAS 122

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: Uncharacterized (conserved protein n=1 Tax=Jannaschia faecimaris TaxID=1244108 RepID=A0A1H3NMM3_9RHOB)

HSP 1 Score: 187 bits (474), Expect = 2.720e-58
Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = 3

Query:  147 MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            M KIKG CLCGA+SFEV NTFEKLF+CSCDQCRQITGSAFASNLFV I  FDW  G D +V YQ+P RDISKSFC+VCG+GVPW + D TKMIVPAG LS P  VAERVRIFT+
Sbjct:    1 MTKIKGRCLCGAISFEVANTFEKLFMCSCDQCRQITGSAFASNLFVSIEEFDWLKGADDVVNYQLPGRDISKSFCRVCGSGVPWSSDDGTKMIVPAGSLSEPAIVAERVRIFTS 114

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: GFA (family protein n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI001652F702)

HSP 1 Score: 184 bits (466), Expect = 5.990e-57
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 3

Query:  153 KIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            K KG CLCG VSF VINTFEKL LCSC+QCRQITGSAFASNLFV I GFDW  G  +IV YQ+P RDISKSFC+VCG+GVPW NGD TKMIVPAG LS PV+V ER+RIF +
Sbjct:   11 KNKGRCLCGVVSFAVINTFEKLLLCSCEQCRQITGSAFASNLFVSIEGFDWLAGTGEIVSYQVPGRDISKSFCRVCGSGVPWPNGDGTKMIVPAGSLSDPVNVVERIRIFAS 122

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: GFA (family protein n=1 Tax=Roseovarius sp. EL26 TaxID=2126672 RepID=UPI0013C5085D)

HSP 1 Score: 183 bits (464), Expect = 8.480e-57
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 3

Query:  147 MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            M KI G+CLCGAVSFEV+NTFEKLF CSCDQCRQITGSAFASNLFV I  FDW G +  IV Y +P RDISKSFC+VCG+GVPW +GD T MIVPAG L+ PV+V ERVRIF +
Sbjct:    1 MNKINGSCLCGAVSFEVVNTFEKLFFCSCDQCRQITGSAFASNLFVSITEFDWLGDIGNIVTYHVPGRDISKSFCRVCGSGVPWASGDGTMMIVPAGSLNEPVNVFERVRIFAS 114

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: CENP-V/GFA (domain-containing protein n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) TaxID=375451 RepID=Q166N4_ROSDO)

HSP 1 Score: 180 bits (457), Expect = 1.310e-55
Identity = 81/112 (72.32%), Postives = 95/112 (84.82%), Query Frame = 3

Query:  153 KIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            KI+G+CLC AVS+EV  +FEKLFLCSCDQCRQITGSAFASNLFV  +GF+W  G ++IV+YQ+P RDISKSFC+VCG+GVPW NGD TKMIVPAG LS P  V ER+RIF +
Sbjct:    8 KIRGSCLCAAVSYEVRGSFEKLFLCSCDQCRQITGSAFASNLFVGTDGFEWLSGTEQIVRYQVPGRDISKSFCRVCGSGVPWTNGDGTKMIVPAGSLSEPAQVVERLRIFVS 119

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: Aldehyde-activating (protein n=1 Tax=Sulfitobacter sp. SK012 TaxID=1389005 RepID=A0A345QQN3_9RHOB)

HSP 1 Score: 179 bits (454), Expect = 3.000e-55
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 3

Query:  147 MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            M+KIKG CLCGAVS+EV N FEKLFLCSC+QCRQI+GSAFASNLF  I GFDW  G  +I  YQ+P RDISKSFC+VCG+GVPW +GD TKMIVPAG LS P  VAER+RIFT+
Sbjct:    1 MQKIKGGCLCGAVSYEVDNNFEKLFLCSCEQCRQISGSAFASNLFGAIEGFDWLSGNGEIENYQMPGRDISKSFCRVCGSGVPWASGDGTKMIVPAGSLSGPAIVAERLRIFTS 114

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BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Match: CENP-V/GFA (domain-containing protein n=2 Tax=Litoreibacter ponti TaxID=1510457 RepID=A0A2T6BCM1_9RHOB)

HSP 1 Score: 176 bits (445), Expect = 2.420e-53
Identity = 88/150 (58.67%), Postives = 101/150 (67.33%), Query Frame = 3

Query:   57 KHPAPNDNAGRRSNAAHQ--QACCAK*KGIVIMK----KIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDINGFDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*LSAPVDVAERVRIFTA 488
            K   P    G  +N  H    A C   KG  + K    +I G CLCGAVSFEV + F+KLF CSCDQCRQITGSAFASNLFV   GF W  G  +IV+YQ+P RDISKSFC+VCG+GVPW + D TKMIVPAG L  P  VAER+RIF +
Sbjct:    2 KEDKPPYQFGTATNGLHSPNHAACDNKKGRQMTKPEQPRITGTCLCGAVSFEVASAFDKLFFCSCDQCRQITGSAFASNLFVGAEGFVWLTGTAEIVRYQVPARDISKSFCRVCGSGVPWASSDGTKMIVPAGILKEPAQVAERIRIFAS 151

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs78155.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Aldehyde-activating	7.400e-63	78.95	protein n=1 Tax=Pelagicola marinus TaxID=2578117 R...	[more]
Uncharacterized	6.730e-61	79.82	conserved protein n=1 Tax=Roseovarius tolerans Tax...	[more]
GFA	1.350e-60	77.19	family protein n=2 Tax=Pseudohalocynthiibacter Tax...	[more]
Glutathione-dependent	6.370e-59	76.32	formaldehyde-activating enzyme n=1 Tax=Roseovarius...	[more]
Uncharacterized	2.720e-58	76.32	conserved protein n=1 Tax=Jannaschia faecimaris Ta...	[more]
GFA	5.990e-57	75.89	family protein n=1 Tax=Roseobacter litoralis TaxID...	[more]
GFA	8.480e-57	73.68	family protein n=1 Tax=Roseovarius sp. EL26 TaxID=...	[more]
CENP-V/GFA	1.310e-55	72.32	domain-containing protein n=1 Tax=Roseobacter deni...	[more]
Aldehyde-activating	3.000e-55	73.68	protein n=1 Tax=Sulfitobacter sp. SK012 TaxID=1389...	[more]
CENP-V/GFA	2.420e-53	58.67	domain-containing protein n=2 Tax=Litoreibacter po...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs78155	contig	H-canaliculatus_M_contigs78155:16..503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	375451.RD1_2499
PFAMs	GFA
Model size	488
Max annot lvl	28211\|Alphaproteobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	6.03e-51
EggNOG OGs	COG3791@1\|root,COG3791@2\|Bacteria,1N031@1224\|Proteobacteria,2VAND@28211\|Alphaproteobacteria,2P56H@2433\|Roseobacter
Description	Glutathione-dependent formaldehyde-activating enzyme
Cds size	294
COG category	S

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.9733064-UTR-H-canaliculatus_M_contigs78155:15..161	1696854117.9733064-UTR-H-canaliculatus_M_contigs78155:15..161	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs78155 16..161 +
1696854118.0047014-UTR-H-canaliculatus_M_contigs78155:455..503	1696854118.0047014-UTR-H-canaliculatus_M_contigs78155:455..503	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs78155 456..503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.992618-CDS-H-canaliculatus_M_contigs78155:161..455	1696854117.992618-CDS-H-canaliculatus_M_contigs78155:161..455	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs78155 162..455 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs78155.1.1	prot_H-canaliculatus_M_contigs78155.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs78155 162..455 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs78155:16..503+
coding sequence from alignment at H-canaliculatus_M_contigs78155:16..503+

protein sequence of mRNA_H-canaliculatus_M_contigs78155.1.1

>prot_H-canaliculatus_M_contigs78155.1.1 ID=prot_H-canaliculatus_M_contigs78155.1.1|Name=mRNA_H-canaliculatus_M_contigs78155.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=98bp
MKKIKGNCLCGAVSFEVINTFEKLFLCSCDQCRQITGSAFASNLFVDING
FDWCGGVDKIVKYQIPERDISKSFCQVCGAGVPWINGDATKMIVPAG*

mRNA from alignment at H-canaliculatus_M_contigs78155:16..503+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs78155.1.1 ID=mRNA_H-canaliculatus_M_contigs78155.1.1|Name=mRNA_H-canaliculatus_M_contigs78155.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=488bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78155:16..503+ (Hapterophycus canaliculatus Oshoro7m male)
TCCCCGGTGATTGTCGTGGGACGCGCTGTTTATGTTGTGAAAATCGAGCC
TTCTCAAAACATCCTGCACCGAATGATAACGCAGGCCGAAGATCAAATGC
AGCGCATCAGCAGGCTTGTTGCGCCAAATAAAAAGGGATCGTGATTATGA
AGAAAATCAAAGGCAACTGCCTGTGCGGCGCGGTGTCATTCGAGGTAATC
AACACCTTCGAAAAGCTGTTTTTGTGCAGCTGTGATCAGTGCCGCCAAAT
CACCGGATCAGCATTTGCGTCCAACTTGTTCGTGGATATCAACGGTTTTG
ACTGGTGCGGGGGCGTTGACAAAATCGTCAAATACCAGATCCCCGAACGG
GACATTTCCAAGTCGTTTTGCCAAGTCTGCGGGGCTGGCGTTCCGTGGAT
AAATGGCGACGCAACCAAGATGATCGTTCCGGCGGGATGACTGAGCGCAC
CAGTTGACGTCGCCGAAAGGGTTAGAATTTTCACCGCA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78155:16..503+

>mRNA_H-canaliculatus_M_contigs78155.1.1 ID=mRNA_H-canaliculatus_M_contigs78155.1.1|Name=mRNA_H-canaliculatus_M_contigs78155.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=294bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78155:16..503+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGAAAATCAAAGGCAACTGCCTGTGCGGCGCGGTGTCATTCGAGGT
AATCAACACCTTCGAAAAGCTGTTTTTGTGCAGCTGTGATCAGTGCCGCC
AAATCACCGGATCAGCATTTGCGTCCAACTTGTTCGTGGATATCAACGGT
TTTGACTGGTGCGGGGGCGTTGACAAAATCGTCAAATACCAGATCCCCGA
ACGGGACATTTCCAAGTCGTTTTGCCAAGTCTGCGGGGCTGGCGTTCCGT
GGATAAATGGCGACGCAACCAAGATGATCGTTCCGGCGGGATGA