mRNA_H-canaliculatus_M_contigs7815.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7815.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7815.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7815.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEQ8_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.240e-82
Identity = 135/201 (67.16%), Postives = 163/201 (81.09%), Query Frame = 1 
Query:    1 KAAWSVTFAQELLVVSAILLCVIAFTLFMAVVGLNKVQYEEGITVLTLPFWGVYFPIGLHGGWTLAASIVNINVALELT-DAGSELAAFILSVVAAAVAASYGSLIYHNQFYLLAIAWAIAGIAAKKNYRREALGQDLASGVNEALQGLWISLLCVAVLGVLAGMRQRNQTELEHQDKRRSPSAPPGNHAQTGLTSAIYSS 600
            +AAWS+ FAQELL+VSAILLC+I  +L +AV+ L+ +Q EEGIT+ TLPFWGVYFPIGLHGGWTLAA+IVNINVALEL  D GSELAA ILS+V AA+ A++ SL++HNQ YLLA+AWAIAGIA+K++YR   LG+DL+ GVN ALQGLWI LLC+ VLG+L G+RQ N+ E E   KRR   + PGN A   LTSAIYSS
Sbjct:  100 QAAWSIVFAQELLIVSAILLCLITLSLTLAVISLSLIQCEEGITLFTLPFWGVYFPIGLHGGWTLAAAIVNINVALELRGDTGSELAALILSLVGAALGAAFISLVFHNQPYLLAVAWAIAGIASKQDYRFVQLGKDLSDGVNVALQGLWIGLLCIGVLGILVGVRQMNRAEAEVIHKRRPIPSAPGNPADRDLTSAIYSS 300
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BLAST of mRNA_H-canaliculatus_M_contigs7815.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.120e-14
Identity = 59/165 (35.76%), Postives = 90/165 (54.55%), Query Frame = 1 
Query:   10 WSVTFAQELLVVSAILLCVIAFTLFMAVVGLNKVQYEEGITVLTLPFWG----VYFPIGLHGGWTLAASIVNINVALELTDAGSELAAFILSVVAAAVAASYGSLIYHNQF---YLLAIAWAIAGIAAKKNYRREALGQDLASGVNEALQGLWISLLCVAVLGVL 483
            W + FA E +V SA+LL  IA +L  A   L K++       L+   WG    V+ P+GLHGGWTLAA +VN+++A+ +  A ++ A  +++ V+  +AA  G L+   Q    Y LA+AW +  I   +   RE LG+D A    +AL+   ++L  V  L  L
Sbjct:  110 WGIAFAAEKIVASAVLLLGIAASLAFACSELTKLRKSAEAPELS---WGRYVVVWLPLGLHGGWTLAAGLVNVSLAVYVEGASAQ-AQLVVAAVSLGIAA-VGGLVASRQMHAAYSLAVAWGLLAIGLNQATTRERLGEDTA----QALEYTSVALAIVLALAAL 265
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BLAST of mRNA_H-canaliculatus_M_contigs7815.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY35_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.660e-9
Identity = 53/178 (29.78%), Postives = 81/178 (45.51%), Query Frame = 1 
Query:    1 KAAWSVTFAQELLVVSAILLCVIAFTLFMAVVGLNKVQYE-EGITVLTLPFWGVYFPIGLHGGWTLAASIVNINVALELTDAGSELAAFILSVVAAAVAASYGSLIY----HNQFYLLAIAWAIAGIAAKKNYRREALGQDLASGVNEALQGLWISLLCVAVLGVLAGMRQRNQTELE 519
            +A WSV +AQE L+ S  +L V++  L+ +  GL + +   +      + F   +F I LH GW LAA++VN+N+AL    AG+  A  + +  A+ +A       Y     +  +  AIAWA+ G AA    R   L    A G+   L    ++L  V    V      R     E
Sbjct:  115 QAVWSVAWAQEALLTSTAILSVVSACLWASAAGLRRARAAGDAPPPNGIEFRSSHFTIALHAGWVLAATLVNVNMAL--VGAGAMAALQLWAAAASLLALGAAGTAYGVKRRDLGFGAAIAWALLGAAANPGARNGRLSVGAARGLQGVLTAGGVALAAVLARAVRRSAGARRDARRE 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7815.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.240e-8267.16protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Hypothetical1.120e-1435.76protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized5.660e-929.78protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7815contigH-canaliculatus_M_contigs7815:3721..5147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1460640.JCM19046_216
PFAMsTspO_MBR
Model size603
Max annot lvl91061|Bacilli
Hectar predicted targeting categorysignal anchor
Exons3
Evalue0.000122
EggNOG OGsCOG1030@1|root,COG1030@2|Bacteria,1V13J@1239|Firmicutes,4IS0D@91061|Bacilli,1ZRZQ@1386|Bacillus
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008200.1
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.8761053-CDS-H-canaliculatus_M_contigs7815:3720..39961696854117.8761053-CDS-H-canaliculatus_M_contigs7815:3720..3996Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7815 3721..3996 -
1696854117.8902733-CDS-H-canaliculatus_M_contigs7815:4341..44691696854117.8902733-CDS-H-canaliculatus_M_contigs7815:4341..4469Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7815 4342..4469 -
1696854117.9018185-CDS-H-canaliculatus_M_contigs7815:4948..51471696854117.9018185-CDS-H-canaliculatus_M_contigs7815:4948..5147Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7815 4949..5147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7815.2.1prot_H-canaliculatus_M_contigs7815.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7815 3721..5147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7815.2.1

>prot_H-canaliculatus_M_contigs7815.2.1 ID=prot_H-canaliculatus_M_contigs7815.2.1|Name=mRNA_H-canaliculatus_M_contigs7815.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=201bp
KAAWSVTFAQELLVVSAILLCVIAFTLFMAVVGLNKVQYEEGITVLTLPF
WGVYFPIGLHGGWTLAASIVNINVALELTDAGSELAAFILSVVAAAVAAS
YGSLIYHNQFYLLAIAWAIAGIAAKKNYRREALGQDLASGVNEALQGLWI
SLLCVAVLGVLAGMRQRNQTELEHQDKRRSPSAPPGNHAQTGLTSAIYSS
*
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mRNA from alignment at H-canaliculatus_M_contigs7815:3721..5147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7815.2.1 ID=mRNA_H-canaliculatus_M_contigs7815.2.1|Name=mRNA_H-canaliculatus_M_contigs7815.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7815:3721..5147- (Hapterophycus canaliculatus Oshoro7m male)
AAGGCGGCCTGGAGCGTCACTTTCGCGCAAGAGTTGCTCGTCGTCAGCGC
CATCCTTCTTTGCGTGATCGCTTTCACGCTCTTCATGGCGGTGGTGGGCC
TAAACAAAGTGCAGTACGAGGAGGGCATCACGGTGCTGACCCTGCCCTTC
TGGGGCGTGTATTTCCCGATCGGGCTTCACGGCGGCTGGACCCTGGCAGG
TGAGCACGGCGAAGGGTGTTTTGCCCCAGTTAGCACAAGCGCTTTTTTGC
CATTTCTTCCGCGTTTTTGTTGTCGTCGTCGTCGTCGTCGTCGTCGATGT
CGTTCCCTGGGTCTCAGCGTTTTCCTATGTTGACCCCGTCTTTGCCGTGT
TTGTCGGCTCAGATAAGAGAATGGTCGGTGTCTCCGACAGCGTTGTCTCG
CGGTGATAGAGGCGTGTCCCGCGGTCGAACAACTGGGAGTGACGTCAACC
ATAGCAACAGAAACGTTACGGAAGAATGCCCCCCGAGAGTTTCGTCTTCC
AGGTCTCAACCCACATTCCTCGATCACGGCAGCTCTCGCAACGCGCACAT
CAAACCACGTCTCGTGACGAACAACTGCCTCCTCGCATCACCCCGCGCCC
CCCTCTCGCCCGGTCCTTGGAACACGCAAACCTCTACAACGTGGTACCTT
CACGCAACGCAAATGCGACGGGAAAAAGCCTCCATCGTCAACATTAACGT
CGCGCTCGAGCTGACGGACGCCGGCTCTGAACTTGCCGCCTTCATCCTGA
GCGTCGTCGCAGCCGCCGTGGCGGCGTCCTACGGCTCGCTCATCTACCAC
AACCAGGTTGGTGTTGGCGGTGACGGTGCCGGTGGTGGTGCTGCGGTCGC
CCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCAGCAGCAAAAT
CGGCGACCTTGTCAGCGCAGAGGGGGGCTTGTGCGTGTTGACGTGCTTGC
TCTCGCCGTGTCCGCCGGAGGTGCGAAGGGGTCAGCTGCCGCAGTGTGTC
CTGTCGCCTGGTTTTTCGAAAATGCGCCGTCCACGGCGTCAACATCCCGC
GAAGCGCGCGTTCGTCTGCTTGTAGAGTTCACAAGCTCCATGTGCTGATT
TCACTCTACCCTCTGCGCCGGACGATGTTTGTGTGGTTACTTCCCGCCCA
GTTCTACCTCCTTGCGATCGCCTGGGCAATTGCCGGCATTGCCGCCAAGA
AGAATTACCGCCGCGAAGCTCTCGGGCAGGATCTTGCCAGCGGCGTCAAC
GAGGCGCTGCAGGGGCTGTGGATCTCGCTGCTGTGCGTGGCTGTGCTTGG
AGTCCTTGCCGGAATGAGGCAGCGAAACCAGACGGAGTTGGAGCATCAAG
ACAAGAGGCGCAGCCCCTCGGCCCCCCCGGGAAACCACGCCCAAACCGGG
CTGACCTCGGCGATATATTCGTCCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7815:3721..5147-

>mRNA_H-canaliculatus_M_contigs7815.2.1 ID=mRNA_H-canaliculatus_M_contigs7815.2.1|Name=mRNA_H-canaliculatus_M_contigs7815.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=603bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7815:3721..5147- (Hapterophycus canaliculatus Oshoro7m male)
AAGGCGGCCTGGAGCGTCACTTTCGCGCAAGAGTTGCTCGTCGTCAGCGC
CATCCTTCTTTGCGTGATCGCTTTCACGCTCTTCATGGCGGTGGTGGGCC
TAAACAAAGTGCAGTACGAGGAGGGCATCACGGTGCTGACCCTGCCCTTC
TGGGGCGTGTATTTCCCGATCGGGCTTCACGGCGGCTGGACCCTGGCAGC
CTCCATCGTCAACATTAACGTCGCGCTCGAGCTGACGGACGCCGGCTCTG
AACTTGCCGCCTTCATCCTGAGCGTCGTCGCAGCCGCCGTGGCGGCGTCC
TACGGCTCGCTCATCTACCACAACCAGTTCTACCTCCTTGCGATCGCCTG
GGCAATTGCCGGCATTGCCGCCAAGAAGAATTACCGCCGCGAAGCTCTCG
GGCAGGATCTTGCCAGCGGCGTCAACGAGGCGCTGCAGGGGCTGTGGATC
TCGCTGCTGTGCGTGGCTGTGCTTGGAGTCCTTGCCGGAATGAGGCAGCG
AAACCAGACGGAGTTGGAGCATCAAGACAAGAGGCGCAGCCCCTCGGCCC
CCCCGGGAAACCACGCCCAAACCGGGCTGACCTCGGCGATATATTCGTCC
TGA
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