mRNA_H-canaliculatus_M_contigs7814.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7814.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7814.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTA9_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.570e-64
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +DLLAVDLGKLALRGLLNRNPELDPKD+DYLLFGTVIQESRTSNIARE+GMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTAD+VLAGG ETFSDLPIRFSRPIR
Sbjct:   73 KDLLAVDLGKLALRGLLNRNPELDPKDVDYLLFGTVIQESRTSNIAREAGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADVVLAGGVETFSDLPIRFSRPIR 182
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Acetyl-CoA (acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.900e-49
Identity = 84/110 (76.36%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +DL+AVDLGKLAL GLL+RNPEL P +IDY+L+GTVIQESRTSNIARE+ M A IP +VP+HT++QACISANQAMC G EKILAG A++V+AGG ETFSDLPIRFSR IR
Sbjct:   47 KDLMAVDLGKLALAGLLHRNPELKPAEIDYVLYGTVIQESRTSNIAREAAMAASIPANVPAHTISQACISANQAMCGGVEKILAGRAEVVVAGGCETFSDLPIRFSRGIR 156
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Acetyl-CoA (C-acyltransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQT4_9ARCH)

HSP 1 Score: 158 bits (400), Expect = 6.620e-47
Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +D LAVDLG+L L+GL+ +   LDP  IDYL  GTVIQE RTSNIARE+G GAGIP+ VPSHTVTQACISANQA+ +GAEKIL G ADIV+AGGAETFSD+PIR+S+PIR
Sbjct:   15 KDYLAVDLGRLVLKGLITKTA-LDPALIDYLYMGTVIQEPRTSNIAREAGFGAGIPIHVPSHTVTQACISANQAITSGAEKILTGQADIVIAGGAETFSDVPIRYSKPIR 123
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU92_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.410e-46
Identity = 78/110 (70.91%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +DLLAVDLG+LA++GL+++ P L P  IDYL++GTVIQE RTSNIARES MGAG+P ++PSHT++QACISAN A C GAEKILAG A +V+AGG ETFSDLPIR S+PIR
Sbjct:   35 KDLLAVDLGRLAMKGLMDKMPSLSPSSIDYLIYGTVIQECRTSNIARESAMGAGLPEALPSHTLSQACISANLAFCTGAEKILAGKAGLVMAGGVETFSDLPIRLSKPIR 144
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7M8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 7.700e-43
Identity = 78/109 (71.56%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:    4 DLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            D +AVDL + AL+GLL +   LDPK IDYL +GTVIQE RTSNIARE+ MGAGIP+SVPS TVT ACIS+N A+ +GAEKIL+G ADI++AGGAETFSD+PIRFS+PIR
Sbjct:    8 DYMAVDLARFALKGLLTKTA-LDPKSIDYLYYGTVIQEPRTSNIAREASMGAGIPISVPSSTVTMACISSNLAITSGAEKILSGQADIIVAGGAETFSDVPIRFSKPIR 115
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUM3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 6.250e-42
Identity = 76/110 (69.09%), Postives = 96/110 (87.27%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +D++A DL + A +GL+N+   +DPKDIDY++ GTVIQE  TSNIARE+ +GAGIP  VP+HTVTQACIS++QA+C+GAEKIL+G ADIVLAGGAETFSD+PIRFS+PIR
Sbjct:   48 KDVIAYDLMRDAFKGLINKTA-IDPKDIDYVIAGTVIQEVGTSNIAREAALGAGIPKHVPAHTVTQACISSSQAICSGAEKILSGHADIVLAGGAETFSDVPIRFSKPIR 156
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQ53_9STRA)

HSP 1 Score: 151 bits (382), Expect = 6.970e-42
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +D +AVDL +LAL+GLL++   L   DIDY+L+G VIQE +TSNIARE+ MGAGIP  VPSHTV QACISAN A+C GAEKILAG AD+V+AGG ETFSD+PIRFS+P+R
Sbjct:   34 KDYMAVDLARLALKGLLDKTA-LPAGDIDYILYGNVIQEPKTSNIAREASMGAGIPQHVPSHTVAQACISANAAICQGAEKILAGQADVVVAGGVETFSDVPIRFSKPLR 142
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Trifunctional (enzyme subunit beta, mitochondrial (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YA86_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.060e-41
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +D++A D+ + A +GL+++   +DPK IDY+L GTVIQE  TSNIARE+ +GAGIP  VP+HTVTQACIS++QA+C GAEKILAG ADIVLAGG ETFSD+PIR+S+PIR
Sbjct:   34 KDVIAYDMMRDAFKGLISKTA-IDPKSIDYVLAGTVIQEVGTSNIAREAALGAGIPKHVPAHTVTQACISSSQAICTGAEKILAGHADIVLAGGVETFSDVPIRYSKPIR 142
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W305_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.330e-40
Identity = 75/107 (70.09%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:   10 LAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            LAVDL + A++GLL +   LDP  +DY+L+GTVIQES+TSNIARE+ + +G+P SVP+HTVTQACISANQA+  GAEKIL+G ADIVLAGG ETFSD+PIRFS+PIR
Sbjct:   27 LAVDLAQKAIKGLLVKTA-LDPALVDYVLYGTVIQESKTSNIAREAAINSGVPKSVPAHTVTQACISANQAITTGAEKILSGQADIVLAGGCETFSDVPIRFSKPIR 132
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BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Match: Trifunctional (enzyme subunit beta, mitochondrial n=4 Tax=Phytophthora TaxID=4783 RepID=D0MUX1_PHYIT)

HSP 1 Score: 147 bits (372), Expect = 2.390e-40
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESGMGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSDLPIRFSRPIR 330
            +D++A D+ + A +GL+N+   +DPK IDY+L GTVIQE  TSNIARE+ +GAGIP  VP+HTVTQACIS++QA+C+GAEKIL+G ADIVLAGG ETFSD+PIRFS+PIR
Sbjct:   44 KDVIAYDMMRDAFKGLINKTG-IDPKSIDYVLAGTVIQEVGTSNIAREAALGAGIPKHVPAHTVTQACISSSQAICSGAEKILSGHADIVLAGGVETFSDVPIRFSKPIR 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7814.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.570e-6495.45protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Acetyl-CoA1.900e-4976.36acetyltransferase n=1 Tax=Tribonema minus TaxID=30... [more]
Acetyl-CoA6.620e-4773.64C-acyltransferase (Fragment) n=1 Tax=archaeon TaxI... [more]
Hypothetical5.410e-4670.91protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical7.700e-4371.56protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Uncharacterized6.250e-4269.09protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID... [more]
Hypothetical6.970e-4269.09protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Trifunctional1.060e-4166.36enzyme subunit beta, mitochondrial (Fragment) n=1 ... [more]
Hypothetical2.330e-4070.09protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Trifunctional2.390e-4067.27enzyme subunit beta, mitochondrial n=4 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7814contigH-canaliculatus_M_contigs7814:3440..4831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3H4
Preferred nameHADHB
PFAMsThiolase_C,Thiolase_N
Model size330
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00326,RC00405,RC01702
KEGG koko:K07509
KEGG ReactionR00391,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747
KEGG Pathwayko00062,ko00071,ko00280,ko01100,ko01110,ko01130,ko01212,map00062,map00071,map00280,map01100,map01110,map01130,map01212
KEGG ModuleM00085,M00087
Hectar predicted targeting categoryother localisation
GOsGO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003857,GO:0003988,GO:0004300,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005759,GO:0005783,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009062,GO:0009295,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016042,GO:0016054,GO:0016408,GO:0016491,GO:0016507,GO:0016508,GO:0016509,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0016829,GO:0016835,GO:0016836,GO:0017076,GO:0019395,GO:0019752,GO:0019866,GO:0019867,GO:0030258,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033218,GO:0034440,GO:0036094,GO:0036125,GO:0042645,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046395,GO:0048037,GO:0048856,GO:0050662,GO:0051287,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:0098588,GO:0098798,GO:0098805,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901681
Exons3
Evalue2.76e-64
EggNOG OGsCOG0183@1|root,KOG1392@2759|Eukaryota
Ec32 ortholog descriptionAcetyl-CoA acetyltransferase subunit, putative mitochondrial presursor Acetyl-CoA acetyltransferase,
Ec32 orthologEc-19_004630.1
EC2.3.1.16
Descriptionlong-chain-3-hydroxyacyl-CoA dehydrogenase activity
Cds size330
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.6897547-CDS-H-canaliculatus_M_contigs7814:3439..35531696854117.6897547-CDS-H-canaliculatus_M_contigs7814:3439..3553Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7814 3440..3553 +
1696854117.708926-CDS-H-canaliculatus_M_contigs7814:4055..41521696854117.708926-CDS-H-canaliculatus_M_contigs7814:4055..4152Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7814 4056..4152 +
1696854117.720261-CDS-H-canaliculatus_M_contigs7814:4712..48311696854117.720261-CDS-H-canaliculatus_M_contigs7814:4712..4831Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7814 4713..4831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7814.2.1prot_H-canaliculatus_M_contigs7814.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7814 3440..4831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7814.2.1

>prot_H-canaliculatus_M_contigs7814.2.1 ID=prot_H-canaliculatus_M_contigs7814.2.1|Name=mRNA_H-canaliculatus_M_contigs7814.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=110bp
RDLLAVDLGKLALRGLLNRNPELDPKDIDYLLFGTVIQESRTSNIARESG
MGAGIPVSVPSHTVTQACISANQAMCNGAEKILAGTADIVLAGGAETFSD
LPIRFSRPIR
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mRNA from alignment at H-canaliculatus_M_contigs7814:3440..4831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7814.2.1 ID=mRNA_H-canaliculatus_M_contigs7814.2.1|Name=mRNA_H-canaliculatus_M_contigs7814.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7814:3440..4831+ (Hapterophycus canaliculatus Oshoro7m male)
AGAGATCTGCTCGCGGTGGACCTTGGCAAGCTAGCGCTGAGGGGCCTGCT
CAACAGGAATCCGGAGCTTGATCCGAAAGACATCGACTACCTTCTGTTCG
GGACCGTCATCCAGGTACGTCCACAGCAGTGCAGGCGGACGGCGAGGCGC
TACCATGCAGCTGCCGCACTCGACGGTCCCAGTTGACAAACGTGCATGGC
AGACCGACACAAACGATCTCCACACTCGTTCACGTAAGAGAGGACAGTAG
TTTGACGAGTAGCCTTCTGCCCGACGAGAGCTTTGTGGTGTAGGTCTGTA
CAGCGTGCATATGCGGGTTTCCGCGAAATGATTGGCGGCCACGCGAAAGC
ATCCGGATAACATCGAGACAAGTGCGCCATGCGATGCGCCGCGCTGCGCT
CTGTTACAATCCATAAGCAACCGTGGAATACCCCTCGTGGGTAATTCCAT
GTCTCTTGTCTTCGTCTGTCTTTTCCGTTTTTTCGCCTCGTGTGACGCCA
ACCCTGCTCAGCATTTTATGTCGAAGCGGAGATAGAATAATAGATGACAC
CAAGGGAACTTGGAATGAAAACGTACTCGACGACACACACTCGTGCTACA
ACCTTTAACGTGACAGGAGTCGCGGACATCTAACATCGCACGCGAGTCAG
GCATGGGTGCGGGGATTCCTGTGTCCGTCCCCTCTCACACCGTCACTCAG
GCCTGCATTTCCGGTGAGACGTCAGATCATCCTACACAAATAACTGCCCC
ATTTCGACGAGATTCTAACAAGAAACCAGGTGCACGTGCACTGAGAGCAT
GCATGTGGAGGCGTTTTTGTTCGCGGTCTCTTTCGGTTTTTGTTGTGTTC
TCGGTTCCGCTGCGATTTGCTGAACATGCTTTCAGTCCTCGTTCGAGTCT
GTTTTTGTGGCCGGCCGTGTTGCGGGGTCATGCCGCGTGCTTGCTGTGCA
GTCTGTTCGTGCTTACTGTGCAGTCTGTTCGTGCTTGCTGTGCAGTCTGT
CCGTGCTTGCTGTGCAGTCTGTTCTTTCTTGTTATGCAAGCTGTCCGTGC
TTGCTGTGCAGTCTGTTCGTTCTCCAGCTGTACGCCTTCAGCACCTGTTT
GATTTTTGTGATCGAAATAGATCGTCTCGAATCGACTACATTAATTTTCA
CCACAGAATCGCCGATTTCCCTTTTCTTAACCCACATGAATGTATCACGT
ATCCTGCTGTCTTTCTGTTCCATCCCCTACGCCTCCCTTTTGTGGTACCC
CTCTGCCGGTCACCATAATACAGCCAACCAAGCGATGTGCAATGGCGCCG
AGAAGATTCTGGCCGGCACCGCAGACATCGTGTTGGCGGGTGGCGCTGAG
ACGTTTTCGGACCTCCCCATCCGCTTCTCTCGACCGATCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7814:3440..4831+

>mRNA_H-canaliculatus_M_contigs7814.2.1 ID=mRNA_H-canaliculatus_M_contigs7814.2.1|Name=mRNA_H-canaliculatus_M_contigs7814.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7814:3440..4831+ (Hapterophycus canaliculatus Oshoro7m male)
AGAGATCTGCTCGCGGTGGACCTTGGCAAGCTAGCGCTGAGGGGCCTGCT
CAACAGGAATCCGGAGCTTGATCCGAAAGACATCGACTACCTTCTGTTCG
GGACCGTCATCCAGGAGTCGCGGACATCTAACATCGCACGCGAGTCAGGC
ATGGGTGCGGGGATTCCTGTGTCCGTCCCCTCTCACACCGTCACTCAGGC
CTGCATTTCCGCCAACCAAGCGATGTGCAATGGCGCCGAGAAGATTCTGG
CCGGCACCGCAGACATCGTGTTGGCGGGTGGCGCTGAGACGTTTTCGGAC
CTCCCCATCCGCTTCTCTCGACCGATCAGG
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