mRNA_H-canaliculatus_M_contigs7814.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs7814.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs7814.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs7814.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTA9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.660e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2

Query:  188 RKPVFVDGARIPFVMSGTTYKDLLAVDLGKLALR 289
            RKPVFVDGARIPFV+SGTTYKDLLAVDLGKLALR
Sbjct:   53 RKPVFVDGARIPFVLSGTTYKDLLAVDLGKLALR 86

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs7814.1.1 vs.
Match: Acetyl-CoA (acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.880e-9
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 2

Query:  185 SRKPVFVDGARIPFVMSGTTYKDLLAVDLGKLAL 286
            SRKPVFVDGARIPF MS T YKDL+AVDLGKLAL
Sbjct:   26 SRKPVFVDGARIPFAMSSTLYKDLMAVDLGKLAL 59

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs7814.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU92_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.760e-7
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 2

Query:  185 SRKPVFVDGARIPFVMSGTTYKDLLAVDLGKLALR 289
            S K VF+DG RIPF +SGT YKDLLAVDLG+LA++
Sbjct:   14 STKVVFIDGCRIPFTLSGTAYKDLLAVDLGRLAMK 48

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs7814.1.1 vs.
Match: Acetyl-CoA (C-acyltransferase n=2 Tax=Longibacter salinarum TaxID=1850348 RepID=A0A2A8D373_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 6.110e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 2

Query:  182 GSRKPVFVDGARIPFVMSGTTYKDLLAVDLGKLALR 289
            GSR PV +DG RIPF  +GT Y DL+A D+G++AL+
Sbjct:    8 GSRTPVLIDGCRIPFQRAGTAYTDLMAYDMGRMALK 43

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs7814.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs7814.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
Uncharacterized	2.660e-11	97.06	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5...	[more]
Acetyl-CoA	3.880e-9	88.24	acetyltransferase n=1 Tax=Tribonema minus TaxID=30...	[more]
Hypothetical	7.760e-7	71.43	protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re...	[more]
Acetyl-CoA	6.110e-5	58.33	C-acyltransferase n=2 Tax=Longibacter salinarum Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs7814	contig	H-canaliculatus_M_contigs7814:1640..3481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D7G3H4
Preferred name	HADHB
PFAMs	Thiolase_C,Thiolase_N
Model size	289
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00326,RC00405,RC01702
KEGG ko	ko:K07509
KEGG Reaction	R00391,R00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747
KEGG Pathway	ko00062,ko00071,ko00280,ko01100,ko01110,ko01130,ko01212,map00062,map00071,map00280,map01100,map01110,map01130,map01212
KEGG Module	M00085,M00087
Hectar predicted targeting category	mitochondrion
GOs	GO:0000062,GO:0000166,GO:0003674,GO:0003824,GO:0003857,GO:0003988,GO:0004300,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005759,GO:0005783,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009062,GO:0009295,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016042,GO:0016054,GO:0016408,GO:0016491,GO:0016507,GO:0016508,GO:0016509,GO:0016614,GO:0016616,GO:0016740,GO:0016746,GO:0016747,GO:0016829,GO:0016835,GO:0016836,GO:0017076,GO:0019395,GO:0019752,GO:0019866,GO:0019867,GO:0030258,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033218,GO:0034440,GO:0036094,GO:0036125,GO:0042645,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046395,GO:0048037,GO:0048856,GO:0050662,GO:0051287,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:0098588,GO:0098798,GO:0098805,GO:1901265,GO:1901363,GO:1901567,GO:1901575,GO:1901681
Exons	2
Evalue	2.1e-12
EggNOG OGs	COG0183@1\|root,KOG1392@2759\|Eukaryota
EC	2.3.1.16
Description	long-chain-3-hydroxyacyl-CoA dehydrogenase activity
Cds size	231
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.6279268-UTR-H-canaliculatus_M_contigs7814:1639..1697	1696854117.6279268-UTR-H-canaliculatus_M_contigs7814:1639..1697	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs7814 1640..1697 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.645453-CDS-H-canaliculatus_M_contigs7814:1697..1888	1696854117.645453-CDS-H-canaliculatus_M_contigs7814:1697..1888	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7814 1698..1888 +
1696854117.6564193-CDS-H-canaliculatus_M_contigs7814:3441..3481	1696854117.6564193-CDS-H-canaliculatus_M_contigs7814:3441..3481	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7814 3442..3481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs7814.1.1	prot_H-canaliculatus_M_contigs7814.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs7814 1698..3481 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs7814:1640..3481+
coding sequence from alignment at H-canaliculatus_M_contigs7814:1640..3481+

protein sequence of mRNA_H-canaliculatus_M_contigs7814.1.1

>prot_H-canaliculatus_M_contigs7814.1.1 ID=prot_H-canaliculatus_M_contigs7814.1.1|Name=mRNA_H-canaliculatus_M_contigs7814.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=77bp
MVHPTVTTAMRVATVPSRAASAAAAASCSRRASLSSSASGSGSRKPVFVD
GARIPFVMSGTTYKDLLAVDLGKLALR

mRNA from alignment at H-canaliculatus_M_contigs7814:1640..3481+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs7814.1.1 ID=mRNA_H-canaliculatus_M_contigs7814.1.1|Name=mRNA_H-canaliculatus_M_contigs7814.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1842bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7814:1640..3481+ (Hapterophycus canaliculatus Oshoro7m male)
GTCCTCTTGAATCCTTTCTCTTGACACTCACGTACACAGGCCTCGCTACA
TCCTTTCCATGGTGCATCCCACAGTCACAACAGCGATGAGAGTAGCGACG
GTGCCCTCTCGTGCGGCATCGGCGGCAGCAGCAGCGAGCTGCAGCCGTCG
AGCGAGCCTATCTTCCTCCGCGAGCGGCAGCGGGAGCAGAAAACCCGTCT
TTGTAGACGGAGCTCGCATCCCCTTCGTCATGAGCGGCACCACTTACAAG
TGAGCTAGAGTCCTTAATGCGAGGTCCATGGATTTTTTCGTTGTACGTGC
CATCAATCGTGCAGCATCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGGGTGTTCGGTGTGTCGCGGGTTGTTGTTCTTGCAC
CTGTACATTTTTCGAACGACCGTTTCAAAGCGGAAAGGCCTTGCACGAGC
TCTCTTTTCTCTCCGCTTTCCGTGCAATCCGTAAAAGTCTGTCTGTGCTT
TACAGCCGATGCAGCTTGCTGTGGACCATATCTCTAGCCTGTTGCGCTTC
TCCTACACCCAATGAGCACTTCGGTGCAACAGGGTTCAGTTGGTGCACTA
CGGCGGACTTCTCTCCGGTCTTCAAAAACCCATCTACCGTTTTTGGTTGC
AGTTGAAGTTCATCCCTCCGCGTCCCACAACCTGGCTGCCTCTGTACGTT
CAGTTTTCGGATCCGACAGGGCGGCACCTCAACATGCCATCACCCTATGC
TGCTGCTGTGTAGCCTGTGGTTGTTCACCTATCAGTGTGGCATTCCGCAG
CGAATGTGCTTTCACGTATTACGGCATCGGTGTTGTAGGCTGGGGACGTC
GGAACTGCTGCTTGTAGACTACGGTTATCGAAACCATTTCATCGAAAGAG
ACGGAACTGCTGTAGATGGTTCTAGTAACCTTTTCAACACAAGGGACAGG
AGGGGACACGCAGCGTTTCGTTGGGAACGGGGATGAGCTGCACGCGTTCT
GCTCGCCGATTGTTGGTGTTTTATTTTGTACCACATGCTCAGCATAGCTG
GAAGCTACAGCTCGTGACAGCGAGCGATGGTTGCTGCCTGCATTGCACAT
GTTTCATGAGGCAAGACGCCTTCCACCCAAAAAAAACGTTGTTCGTTTTC
GCTGAGACCATGTACATGCCTTTAGAATCTTCGAGTAGAAGTCGTTGGGG
CTGGAAGTTAACCCAACTTGAGGAGCGCAGACAAGTATATGTTGCTGCCA
GCGGTATATCTTAGACGGGATCTGAAGAGATGGCACGGACAACACCAACC
TGCAAGTGCAGGCACTTCTTTCGTAGCTCTTCCGAGGTCATCCGCGGCCA
TCCGCACCTCCTATACAGACGTGTTCCTGACTGAGTTTGTTCCGTTTGCT
CCGAAAAGCACTTTTGACAGATACACTATTATAGTGCTTGATGCTTGATG
CTTCCCGCCACAGACGATGCGTCTACGATACATGTACCAGCTTACAGGCG
TTTTTCCTTGCAGATGGTGCTTACCGCAGCAGCTCGCACATCGTTGTCGA
ATCATCAGCATGCTCAAGCTGGGGATCCCCCACCGCAGCGAATGTGGGTA
CGGCTTCTTGTCATCCGATCCCGCTCCAATCTGCTGTGCACAGATACTAT
TGTGCGCAGATACTGCTGTGCGCAGATAGATGCCCCCAGCCTCCCGAGTG
ATTTCCGAACATCCTGCCGAGCAGGGCACTGCTGCTGACACGTTTTGTTT
TCACGGATGCCCGTGCGATGGCGGTGGTGCTGCTGTTGCTTCGATTGCGC
AGAGATCTGCTCGCGGTGGACCTTGGCAAGCTAGCGCTGAGG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7814:1640..3481+

>mRNA_H-canaliculatus_M_contigs7814.1.1 ID=mRNA_H-canaliculatus_M_contigs7814.1.1|Name=mRNA_H-canaliculatus_M_contigs7814.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=231bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7814:1640..3481+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTGCATCCCACAGTCACAACAGCGATGAGAGTAGCGACGGTGCCCTC
TCGTGCGGCATCGGCGGCAGCAGCAGCGAGCTGCAGCCGTCGAGCGAGCC
TATCTTCCTCCGCGAGCGGCAGCGGGAGCAGAAAACCCGTCTTTGTAGAC
GGAGCTCGCATCCCCTTCGTCATGAGCGGCACCACTTACAAAGATCTGCT
CGCGGTGGACCTTGGCAAGCTAGCGCTGAGG