mRNA_H-canaliculatus_M_contigs78101.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs78101.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs78101.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.740e-19
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGVDAA-GNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E    +   F+LL +WN RG   V AA G V +PA  P+L+ +AR++ G++ TSCQAERNFSAL H++ D R   L  ++E++
Sbjct:  123 EREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERM 214

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.940e-18
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGVDAA-GNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E    +   F++L YWN RG   V A  G V +PA  P+L+ +AR+Y G++ TSCQAERNFSAL H++  +R   LP K+E++
Sbjct:  510 EREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERM 601

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BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.970e-18
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGVDAA-GNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E    +   F++L YWN RG   V A  G V +PA  P+L+ +AR+Y G++ TSCQAERNFSAL H++  +R   LP K+E++
Sbjct:  705 EREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERM 796

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.060e-18
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGV-DAAGNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E        F++L +WN RG   V    GNV +PA  P+L+ +AR++ G++ +SCQAERNFSAL H++  +R   L RK+E++
Sbjct:  128 EREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERM 219

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.660e-17
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGVDAA-GNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E    +   F+L+ +WN RG   V AA G V +PA  P+L+ +AR++ G++ TSCQAERNFSAL H++ ++R   LP ++E++
Sbjct:  402 EREMLVYLAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERM 493

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.240e-17
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGV-DAAGNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E        F++L +WN RG   V    GNV +PA  P+L+ +AR++ G++ +SCQAERNFSAL H++  +R   L RK+E++
Sbjct:  693 EREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERM 784

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.350e-17
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGVDAA-GNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E    +   F+LL +WN RG   V AA G V +PA  P+L+ +AR++ G++ TSCQAERNFSAL H++ D+    L  ++E++
Sbjct:  506 EREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERM 597

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.730e-17
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGV-DAAGNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ERE   Y+ E    +   F+L+ +WN RG   V    G V APA  P+L+ +AR++ G++ TSCQAERNFSAL H++  +R   L RK+E++
Sbjct:  388 EREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERM 479

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.640e-15
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGVDAA-GNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMR 243
            ERE   Y+ E    +   F+ L +WN RG   V AA G V +PA  P+L+ +AR++ G++ TSCQAERNFSAL H++ D+R
Sbjct:  538 EREMLVYLAEQPQVDVDDFNPLGFWNRRGTDSVSAATGKVSSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLR 618

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.450e-14
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1

Query:    4 EREFAAYMKEAAATNDAKFDLLKYWNARGVGGVDAAGNVVAPARWPHLSLLARVYAGVDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQI 276
            ++E   Y K  AA     +D+L +W   G   +D  GNVV+ A++P LS+LARVY  +D+TSCQ+ER FS L  V +++R   +P ++E +
Sbjct:  157 QKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMV 247

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs78101.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
Dimer_Tnp_hAT	4.740e-19	44.57	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Dimer_Tnp_hAT	1.940e-18	45.65	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Dimer_Tnp_hAT	1.970e-18	45.65	domain-containing protein n=4 Tax=Ectocarpus sp. C...	[more]
Uncharacterized	6.060e-18	42.39	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.660e-17	43.48	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	3.240e-17	42.39	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.350e-17	43.48	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.730e-17	43.48	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.640e-15	46.91	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Dimer_Tnp_hAT	3.450e-14	40.66	domain-containing protein (Fragment) n=1 Tax=Ectoc...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs78101	contig	H-canaliculatus_M_contigs78101:203..493 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	291
Hectar predicted targeting category	other localisation
Exons	1
Cds size	267

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.4381044-CDS-H-canaliculatus_M_contigs78101:202..469	1696854117.4381044-CDS-H-canaliculatus_M_contigs78101:202..469	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs78101 203..469 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.4493692-UTR-H-canaliculatus_M_contigs78101:469..493	1696854117.4493692-UTR-H-canaliculatus_M_contigs78101:469..493	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs78101 470..493 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs78101.1.1	prot_H-canaliculatus_M_contigs78101.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs78101 203..469 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs78101:203..493-
coding sequence from alignment at H-canaliculatus_M_contigs78101:203..493-

protein sequence of mRNA_H-canaliculatus_M_contigs78101.1.1

>prot_H-canaliculatus_M_contigs78101.1.1 ID=prot_H-canaliculatus_M_contigs78101.1.1|Name=mRNA_H-canaliculatus_M_contigs78101.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=89bp
MKEAAATNDAKFDLLKYWNARGVGGVDAAGNVVAPARWPHLSLLARVYAG
VDTTSCQAERNFSALKHVLSDMRAGTLPRKIEQIDAVA*

mRNA from alignment at H-canaliculatus_M_contigs78101:203..493-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs78101.1.1 ID=mRNA_H-canaliculatus_M_contigs78101.1.1|Name=mRNA_H-canaliculatus_M_contigs78101.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=291bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78101:203..493- (Hapterophycus canaliculatus Oshoro7m male)
GCAGAGCGCGAGTTTGCCGCCTACATGAAAGAAGCGGCCGCCACCAATGA
CGCCAAATTCGACCTACTGAAGTACTGGAATGCGCGGGGCGTGGGTGGGG
TAGACGCGGCAGGGAACGTCGTTGCACCTGCCCGCTGGCCGCATCTGAGT
TTGCTAGCACGCGTGTACGCAGGCGTAGACACCACCAGTTGTCAAGCGGA
GAGGAACTTTTCCGCCCTCAAGCACGTCTTAAGTGACATGCGTGCCGGTA
CCCTGCCCCGTAAGATCGAGCAGATAGATGCTGTTGCTTAG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78101:203..493-

>mRNA_H-canaliculatus_M_contigs78101.1.1 ID=mRNA_H-canaliculatus_M_contigs78101.1.1|Name=mRNA_H-canaliculatus_M_contigs78101.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=267bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78101:203..493- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAAGAAGCGGCCGCCACCAATGACGCCAAATTCGACCTACTGAAGTA
CTGGAATGCGCGGGGCGTGGGTGGGGTAGACGCGGCAGGGAACGTCGTTG
CACCTGCCCGCTGGCCGCATCTGAGTTTGCTAGCACGCGTGTACGCAGGC
GTAGACACCACCAGTTGTCAAGCGGAGAGGAACTTTTCCGCCCTCAAGCA
CGTCTTAAGTGACATGCGTGCCGGTACCCTGCCCCGTAAGATCGAGCAGA
TAGATGCTGTTGCTTAG