mRNA_H-canaliculatus_M_contigs7808.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7808.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7808.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7808.1.1 vs.
Match: Reverse (transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.710e-12
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:    7 FTVLGNLAKGEKADGSRRVRSFERGKDGMIVSTKARLVARVLCLGKVLIYVKTPAPTPAAASVKIVVAVDNELGCRVRHLDTEHAFTRAELRCPVCTKLPGGCSDLSGRIPRLE 348
            F  +  L +G KA GS+ V S++  + G+IV +KAR+VAR       + +  + +  P+AAS+K V+AV  E G ++ H D + A+  A+L   +  + P GC  +SG++ ++E
Sbjct:   48 FPKVKELPEGRKAIGSKWVFSWKTNEKGLIVDSKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLTEEIYLRFPEGCGSMSGKVVKVE 161
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7808.1.1 vs.
Match: Reverse (transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU20_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.240e-8
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:  106 KARLVARVLCLGKVLIYVKTPAPTPAAASVKIVVAVDNELGCRVRHLDTEHAFTRAELRCPVCTKLPGGCSDLSGRIPRLE 348
            K RLVAR       + Y  + +P P++AS+K+++AV+NE G  + H D + A T A L   V  +LP GC D S +I + E
Sbjct:  245 KTRLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVENEKGMNLNHWDVKQAHTHATLDEEVFLRLPAGCGDKSHKIAKAE 325
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BLAST of mRNA_H-canaliculatus_M_contigs7808.1.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY7_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.250e-7
Identity = 35/114 (30.70%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:    7 FTVLGNLAKGEKADGSRRVRSFERGKDGMIVSTKARLVARVLCLGKVLIYVKTPAPTPAAASVKIVVAVDNELGCRVRHLDTEHAFTRAELRCPVCTKLPGGCSDLSGRIPRLE 348
            F+ +    +G +   S+   S++  K+G   + KARLVAR L     + Y  + +P P++AS+K+++AV+NE G  + H D + A+T A L     ++ P      S +I + E
Sbjct:  723 FSFVDGAPEGRRPVSSKWCFSWKTNKEGKKYTLKARLVARGLSQIPNVDYFHSSSPCPSSASIKLMLAVENEKGMNLNHWDVKQAYTHATLDEGFFSEAPRWVRGQSHKIVKAE 836
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7808.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Reverse3.710e-1234.21transcriptase Ty1/copia-type domain-containing pro... [more]
Reverse4.240e-839.51transcriptase Ty1/copia-type domain-containing pro... [more]
CCHC-type7.250e-730.70domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7808contigH-canaliculatus_M_contigs7808:4536..4892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog15368.BRADI1G24480.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size357
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.17e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3INI4@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size357
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.266375-CDS-H-canaliculatus_M_contigs7808:4535..48921696854117.266375-CDS-H-canaliculatus_M_contigs7808:4535..4892Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7808 4536..4892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7808.1.1prot_H-canaliculatus_M_contigs7808.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7808 4536..4892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7808.1.1

>prot_H-canaliculatus_M_contigs7808.1.1 ID=prot_H-canaliculatus_M_contigs7808.1.1|Name=mRNA_H-canaliculatus_M_contigs7808.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=119bp
NAFTVLGNLAKGEKADGSRRVRSFERGKDGMIVSTKARLVARVLCLGKVL
IYVKTPAPTPAAASVKIVVAVDNELGCRVRHLDTEHAFTRAELRCPVCTK
LPGGCSDLSGRIPRLEST*
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mRNA from alignment at H-canaliculatus_M_contigs7808:4536..4892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7808.1.1 ID=mRNA_H-canaliculatus_M_contigs7808.1.1|Name=mRNA_H-canaliculatus_M_contigs7808.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7808:4536..4892+ (Hapterophycus canaliculatus Oshoro7m male)
AATGCGTTCACGGTTCTGGGCAACCTGGCAAAAGGCGAGAAAGCTGACGG
TTCTAGGCGAGTTCGCTCGTTCGAGCGGGGCAAGGATGGCATGATTGTGA
GCACGAAGGCCAGGCTTGTAGCCCGTGTCTTGTGCCTAGGAAAGGTGTTG
ATTTATGTGAAGACACCTGCACCTACCCCTGCCGCGGCATCGGTGAAGAT
TGTTGTTGCTGTTGATAACGAGTTAGGGTGCCGTGTACGCCACCTAGACA
CGGAGCATGCCTTCACACGAGCAGAGTTGCGCTGTCCGGTCTGCACGAAG
CTTCCTGGTGGGTGTAGTGATCTATCAGGTAGGATCCCACGACTGGAGAG
TACGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7808:4536..4892+

>mRNA_H-canaliculatus_M_contigs7808.1.1 ID=mRNA_H-canaliculatus_M_contigs7808.1.1|Name=mRNA_H-canaliculatus_M_contigs7808.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7808:4536..4892+ (Hapterophycus canaliculatus Oshoro7m male)
AATGCGTTCACGGTTCTGGGCAACCTGGCAAAAGGCGAGAAAGCTGACGG
TTCTAGGCGAGTTCGCTCGTTCGAGCGGGGCAAGGATGGCATGATTGTGA
GCACGAAGGCCAGGCTTGTAGCCCGTGTCTTGTGCCTAGGAAAGGTGTTG
ATTTATGTGAAGACACCTGCACCTACCCCTGCCGCGGCATCGGTGAAGAT
TGTTGTTGCTGTTGATAACGAGTTAGGGTGCCGTGTACGCCACCTAGACA
CGGAGCATGCCTTCACACGAGCAGAGTTGCGCTGTCCGGTCTGCACGAAG
CTTCCTGGTGGGTGTAGTGATCTATCAGGTAGGATCCCACGACTGGAGAG
TACGTAG
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