mRNA_H-canaliculatus_M_contigs78061.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78061.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78061.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: ABC-2 (family transporter protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6A952_9BACT)

HSP 1 Score: 275 bits (704), Expect = 1.460e-90
Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTVIWCIARGSD VSGEL RGTLEMLLSQPISRTRYLMSHAVVSVGGL  LCL+LW GVAIG++RT LTETIQPPS+QIPFT+  VPLDDSEPV  +FPMSDRVD+RTYTASVFHLF FG+FLLG+S+CFSAFDRYRWRTIG VMTVY
Sbjct:   83 FDEPIVILCTVIWCIARGSDVVSGELARGTLEMLLSQPISRTRYLMSHAVVSVGGLLLLCLVLWGGVAIGVQRTILTETIQPPSMQIPFTNIRVPLDDSEPVEVSFPMSDRVDIRTYTASVFHLFCFGYFLLGLSSCFSAFDRYRWRTIGAVMTVY 238          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: Membrane (protein n=2 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1B9D8_RHOIS)

HSP 1 Score: 250 bits (639), Expect = 1.010e-80
Identity = 117/156 (75.00%), Postives = 137/156 (87.82%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTVIWCIARGSD VSGELGRGTLEMLLSQPISR R+++SHAVVS+GGL ALCL LWAG+ +G+  T+L+ETI PPS+++PF  F +PL +  PV ++FPMSDRVD+R YTASVFHLF+FGFFLLG+S CFS+ DRYRWRTIG VMTVY
Sbjct:   82 FDEPIVILCTVIWCIARGSDVVSGELGRGTLEMLLSQPISRARFMLSHAVVSIGGLIALCLALWAGMGVGVHLTTLSETIPPPSVRVPFLGFELPLTNDPPVEHSFPMSDRVDLRIYTASVFHLFAFGFFLLGLSACFSSLDRYRWRTIGAVMTVY 237          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: Uncharacterized (protein n=9 Tax=Rhodopirellula TaxID=265488 RepID=Q7UUJ9_RHOBA)

HSP 1 Score: 247 bits (631), Expect = 1.640e-79
Identity = 113/156 (72.44%), Postives = 135/156 (86.54%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTV+WCIARGSD VSGELGRGTLEMLLSQP+SR R+++SHAVVS+GGL ALCL LWAG+ +G+  T+LTE + PPS+++PF  F +PL D  PV  +FPMSDRVD+RTY++SVF LF+FGFFLLG+S CFS+ DRYRWRTIG VMTVY
Sbjct:   82 FDEPIVILCTVVWCIARGSDVVSGELGRGTLEMLLSQPVSRARFMLSHAVVSIGGLVALCLALWAGMGVGVHATTLTEVVPPPSVRVPFFGFELPLTDDAPVEQSFPMSDRVDLRTYSSSVFQLFAFGFFLLGLSACFSSLDRYRWRTIGAVMTVY 237          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: ABC (transporter permease n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E529215)

HSP 1 Score: 247 bits (630), Expect = 2.400e-79
Identity = 114/156 (73.08%), Postives = 135/156 (86.54%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTV+WCIARGSD VSGELGRGTLEMLL QPISR R+++SHAVVS+GGL ALCL+LWAGV +G++ T L ET+ PPS+++PF +  +PL +  PV  TFPMS++VDV TYTASVFHLF+FGFFLLG+S CFS+ DRYRWRTIG VMTVY
Sbjct:   83 FDEPIVILCTVVWCIARGSDVVSGELGRGTLEMLLGQPISRLRFMLSHAVVSIGGLIALCLVLWAGVGVGVQTTMLKETVPPPSVRVPFLNMELPLTNDPPVERTFPMSEQVDVLTYTASVFHLFAFGFFLLGLSACFSSMDRYRWRTIGAVMTVY 238          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: Putative (membrane protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TP44_9BACT)

HSP 1 Score: 245 bits (626), Expect = 9.670e-79
Identity = 115/156 (73.72%), Postives = 136/156 (87.18%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEP+VILCTVIWC+ARGSD VSGELGRGT+EMLLSQPISR R+L+SHA+VS  GL  LCL+LWAG+ +GIE T+LTET+ PPS+++PF  F +PL +  PV  +FPMS+RVD  TYTASVFHLF+FGFFLLG+STCFS+FDRYRWRTIG VMTVY
Sbjct:   83 FDEPMVILCTVIWCVARGSDVVSGELGRGTMEMLLSQPISRARFLLSHALVSSVGLLLLCLLLWAGMTVGIETTTLTETVPPPSMRVPFLGFELPLTNDAPVEISFPMSERVDTETYTASVFHLFAFGFFLLGISTCFSSFDRYRWRTIGAVMTVY 238          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: Putative (membrane protein n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5UEJ0_9BACT)

HSP 1 Score: 240 bits (613), Expect = 8.980e-77
Identity = 113/156 (72.44%), Postives = 135/156 (86.54%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTVIWC+ARGSD VSGELGRGTLEMLLSQPISRTR+++SHA VS+ GL  LC++LWAG+ +GIE T+LTETI PPS+++PF  F +PL +  P   +F MS+RV+  TYTA+VFHLF+FGFFLLGMS+CFS+FDRYRWRTIG VMTVY
Sbjct:   83 FDEPIVILCTVIWCVARGSDVVSGELGRGTLEMLLSQPISRTRFILSHATVSIAGLITLCVLLWAGMTVGIETTTLTETIPPPSMRVPFLGFELPLTNDAPTEISFGMSERVNPLTYTAAVFHLFAFGFFLLGMSSCFSSFDRYRWRTIGGVMTVY 238          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: ABC-2 (family transporter protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6C3L4_9BACT)

HSP 1 Score: 231 bits (588), Expect = 5.440e-73
Identity = 108/156 (69.23%), Postives = 131/156 (83.97%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTVIWC+ARG+D VSGELGRGTLEMLLSQPISRTR+L+SHA+VS+ GL ALCL+LWAG+A+GI+ T++TETI PPSIQ+PF  F +PL       ++F +S RV   TY+ASV +LF+ GFFLLG+S+C S FDRYRWRTIG VMT+Y
Sbjct:   83 FDEPIVILCTVIWCVARGTDVVSGELGRGTLEMLLSQPISRTRFLLSHAIVSMTGLFALCLLLWAGMAVGIQTTTITETIPPPSIQVPFLGFQIPLSSDPATLDSFALSQRVSPATYSASVLNLFALGFFLLGLSSCLSCFDRYRWRTIGAVMTIY 238          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: ABC-2 (family transporter protein n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5YJT2_9BACT)

HSP 1 Score: 228 bits (582), Expect = 4.400e-72
Identity = 108/156 (69.23%), Postives = 127/156 (81.41%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTVIWC+ARGSD +SGELGRGTLEMLLSQPISRTR+LMSHA VS  GL  LCL+LWAG+ +GIE T++TETI PPSI++P     +PL    P   +F + +RV    YTASVFHLF+FG+FLLG+S+C S+FDRYRWRTIG VMTVY
Sbjct:   83 FDEPIVILCTVIWCVARGSDVISGELGRGTLEMLLSQPISRTRFLMSHAFVSAAGLLGLCLLLWAGMTVGIETTTVTETIAPPSIRVPLLGLELPLSSDPPAEVSFSLGERVAPGIYTASVFHLFAFGYFLLGLSSCISSFDRYRWRTIGAVMTVY 238          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: ABC-2 (family transporter protein n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6EHV9_9BACT)

HSP 1 Score: 222 bits (566), Expect = 9.380e-70
Identity = 103/156 (66.03%), Postives = 127/156 (81.41%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            +DEPIVILCTVIWCI+RGSD +SGELGRGTLEMLL+QPI R   L+SHA VSV GLA LCL++WAG+A+G+  T++TE++ PPS +IP  +  +PL   +PVT T P+SDRVDV  Y AS FHLF+FGFFLLG+ST FSA DRYRWRT+G V+ +Y
Sbjct:   76 YDEPIVILCTVIWCISRGSDVISGELGRGTLEMLLAQPIRRRTLLLSHATVSVVGLAMLCLLVWAGIAVGVMATTVTESVSPPSFRIPIFNLDIPLTVDKPVTQTMPLSDRVDVEAYAASTFHLFAFGFFLLGLSTMFSALDRYRWRTVGAVVGIY 231          
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A354PHD8_9PLAN)

HSP 1 Score: 221 bits (562), Expect = 3.780e-69
Identity = 106/156 (67.95%), Postives = 126/156 (80.77%), Query Frame = 1
Query:    1 FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAVVSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSEPVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIGTVMTVY 468
            FDEPIVILCTV+WCIARGSD VSGELGRGTLEMLL+QPISRTR L+SHA V+V GLA L L LWAG+A+GI RT++TET+ PPS ++PFT+F +PL    P   +FPMS  VD   +   VF LF+FGFF+LG+ST FS+ DRYRWRT+G VMTVY
Sbjct:   76 FDEPIVILCTVVWCIARGSDVVSGELGRGTLEMLLAQPISRTRLLLSHAFVAVSGLAFLTLSLWAGIAVGIARTTITETVPPPSFRLPFTAFEIPLTTGGPTQESFPMSSVVDPWVFGTGVFALFAFGFFILGLSTFFSSLDRYRWRTVGAVMTVY 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78061.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC-21.460e-9085.90family transporter protein n=1 Tax=Rhodopirellula ... [more]
Membrane1.010e-8075.00protein n=2 Tax=Rhodopirellula islandica TaxID=595... [more]
Uncharacterized1.640e-7972.44protein n=9 Tax=Rhodopirellula TaxID=265488 RepID=... [more]
ABC2.400e-7973.08transporter permease n=2 Tax=unclassified Rhodopir... [more]
Putative9.670e-7973.72membrane protein n=2 Tax=Rhodopirellula TaxID=2654... [more]
Putative8.980e-7772.44membrane protein n=1 Tax=Rhodopirellula sallentina... [more]
ABC-25.440e-7369.23family transporter protein n=1 Tax=Planctomycetes ... [more]
ABC-24.400e-7269.23family transporter protein n=1 Tax=Rhodopirellula ... [more]
ABC-29.380e-7066.03family transporter protein n=1 Tax=Rubripirellula ... [more]
Uncharacterized3.780e-6967.95protein n=1 Tax=Planctomycetaceae bacterium TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78061contigH-canaliculatus_M_contigs78061:3..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog243090.RB3252
PFAMsABC2_membrane_2
Model size483
Max annot lvl203682|Planctomycetes
KEGG koko:K01992
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.69e-80
EggNOG OGsCOG1277@1|root,COG1277@2|Bacteria,2J0S8@203682|Planctomycetes
DescriptionABC-2 family transporter protein
Cds size483
COG categoryS
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.0949228-CDS-H-canaliculatus_M_contigs78061:2..4851696854117.0949228-CDS-H-canaliculatus_M_contigs78061:2..485Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78061 3..485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78061.1.1prot_H-canaliculatus_M_contigs78061.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78061 3..485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78061.1.1

>prot_H-canaliculatus_M_contigs78061.1.1 ID=prot_H-canaliculatus_M_contigs78061.1.1|Name=mRNA_H-canaliculatus_M_contigs78061.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=161bp
FDEPIVILCTVIWCIARGSDAVSGELGRGTLEMLLSQPISRTRYLMSHAV
VSVGGLAALCLILWAGVAIGIERTSLTETIQPPSIQIPFTSFSVPLDDSE
PVTNTFPMSDRVDVRTYTASVFHLFSFGFFLLGMSTCFSAFDRYRWRTIG
TVMTVYFGHP*
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mRNA from alignment at H-canaliculatus_M_contigs78061:3..485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78061.1.1 ID=mRNA_H-canaliculatus_M_contigs78061.1.1|Name=mRNA_H-canaliculatus_M_contigs78061.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=483bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78061:3..485+ (Hapterophycus canaliculatus Oshoro7m male)
TTTGACGAGCCGATCGTGATTTTGTGCACGGTGATTTGGTGCATCGCACG AGGCAGCGACGCTGTCAGTGGCGAACTCGGTCGTGGGACTCTGGAGATGC TGCTCAGCCAGCCAATCAGTCGAACGCGTTACTTGATGTCGCACGCGGTG GTGAGTGTCGGCGGACTGGCGGCGTTGTGTTTGATCCTATGGGCGGGTGT CGCGATTGGGATCGAACGAACATCGCTGACCGAAACGATCCAGCCTCCAT CGATCCAGATTCCGTTCACCAGTTTCAGCGTGCCGTTGGATGATAGTGAA CCGGTCACGAACACGTTCCCAATGAGTGACCGAGTCGACGTGCGAACGTA CACGGCGTCGGTTTTTCACTTGTTCAGTTTCGGTTTCTTTTTGCTCGGGA TGAGCACCTGTTTCAGTGCTTTTGACCGGTACCGCTGGCGAACGATCGGA ACCGTGATGACGGTCTACTTCGGGCACCCATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78061:3..485+

>mRNA_H-canaliculatus_M_contigs78061.1.1 ID=mRNA_H-canaliculatus_M_contigs78061.1.1|Name=mRNA_H-canaliculatus_M_contigs78061.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=483bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78061:3..485+ (Hapterophycus canaliculatus Oshoro7m male)
TTTGACGAGCCGATCGTGATTTTGTGCACGGTGATTTGGTGCATCGCACG
AGGCAGCGACGCTGTCAGTGGCGAACTCGGTCGTGGGACTCTGGAGATGC
TGCTCAGCCAGCCAATCAGTCGAACGCGTTACTTGATGTCGCACGCGGTG
GTGAGTGTCGGCGGACTGGCGGCGTTGTGTTTGATCCTATGGGCGGGTGT
CGCGATTGGGATCGAACGAACATCGCTGACCGAAACGATCCAGCCTCCAT
CGATCCAGATTCCGTTCACCAGTTTCAGCGTGCCGTTGGATGATAGTGAA
CCGGTCACGAACACGTTCCCAATGAGTGACCGAGTCGACGTGCGAACGTA
CACGGCGTCGGTTTTTCACTTGTTCAGTTTCGGTTTCTTTTTGCTCGGGA
TGAGCACCTGTTTCAGTGCTTTTGACCGGTACCGCTGGCGAACGATCGGA
ACCGTGATGACGGTCTACTTCGGGCACCCATAG
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