mRNA_H-canaliculatus_M_contigs78052.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs78052.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs78052.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.720e-28
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPVLQPYRR +T+ VQTLLQGVHIRED+D LPVAVKRQTTAFPPNFVHSLDSTHMMMT
Sbjct: 1024 GLPVLQPYRRNDTYQVQTLLQGVHIREDSDNLPVAVKRQTTAFPPNFVHSLDSTHMMMT 1082

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S9E0_BLAHN)

HSP 1 Score: 91.7 bits (226), Expect = 3.410e-20
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYRR N +H+ T +Q V ++ +ND LPV  +RQ++AFPPNFVHSLDSTHMMMT
Sbjct:  743 GLPVVQPYRRENVYHISTAMQDVQVKVNNDVLPVLTRRQSSAFPPNFVHSLDSTHMMMT 801

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-dependent (RNA polymerase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007112F92)

HSP 1 Score: 90.5 bits (223), Expect = 8.680e-20
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYR+ N FH+ T +Q V ++ +ND LPV  +RQ++AFPPNFVHSLDSTHMMMT
Sbjct:  744 GLPVVQPYRKENIFHITTAMQDVQVKVNNDILPVMTRRQSSAFPPNFVHSLDSTHMMMT 802

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LUV8_BLAHO)

HSP 1 Score: 90.1 bits (222), Expect = 1.170e-19
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYR+ N FH+ T +Q V ++ +ND LPV  ++Q++AFPPNFVHSLDSTHMMMT
Sbjct:  454 GLPVVQPYRKENVFHIATAMQDVQVKVNNDVLPVLTRKQSSAFPPNFVHSLDSTHMMMT 512

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIM1_AUXPR)

HSP 1 Score: 88.2 bits (217), Expect = 5.630e-19
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYRRT   HV+TLLQ + + E+ND+LPV   RQ TAFPPNF+HS+DS+HMMMT
Sbjct:  902 GLPVVQPYRRTTRHHVRTLLQRLVVVENNDELPVMKTRQRTAFPPNFIHSVDSSHMMMT 960

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LJP9_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 6.940e-18
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLP++QPYR+++  H++TLLQ + + E+ND LPV   RQ TAFPPN++HS+DSTHMMMT
Sbjct:  179 GLPIVQPYRKSDKQHIRTLLQRLVLVENNDALPVLKMRQRTAFPPNYIHSIDSTHMMMT 237

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0I2_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.010e-17
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYR+ N   VQTL+Q V +  + D LPV+  RQ +AFPPNFVHSLDSTHM+MT
Sbjct:   19 GLPVVQPYRKHNLHVVQTLVQKVMLYREEDNLPVSPIRQRSAFPPNFVHSLDSTHMLMT 77

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BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5S7_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.210e-17
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYR+   + VQTL+Q + +   +D LPVA +RQ +AFPPNFVHSLDSTHMMMT
Sbjct:  251 GLPVVQPYRKNTRYVVQTLVQYLQLARSDDALPVAAQRQRSAFPPNFVHSLDSTHMMMT 309

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.240e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYRR     V+TL+Q V + + NDKLPV+  RQ +AFPPNFVHSLDSTHM+MT
Sbjct:  965 GLPVIQPYRRDKGLLVKTLIQSVILVDCNDKLPVSSSRQRSAFPPNFVHSLDSTHMLMT 1023

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQB5_CHLVA)

HSP 1 Score: 82.8 bits (203), Expect = 4.390e-17
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1

Query:    1 GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHSLDSTHMMMT 177
            GLPV+QPYRR +  HV+TLLQ + + E+ND LP+  +RQ TAFPPN++HS+DS+HMM+T
Sbjct:  458 GLPVVQPYRRKDRQHVRTLLQRLVLVENNDDLPIMKQRQRTAFPPNYIHSIDSSHMMLT 516

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs78052.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
DNA-directed	6.720e-28	89.83	RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID...	[more]
DNA-directed	3.410e-20	66.10	RNA polymerase n=1 Tax=Blastocystis sp. subtype 1 ...	[more]
DNA-dependent	8.680e-20	66.10	RNA polymerase n=1 Tax=Blastocystis sp. subtype 4 ...	[more]
DNA-directed	1.170e-19	64.41	RNA polymerase n=1 Tax=Blastocystis hominis TaxID=...	[more]
DNA-directed	5.630e-19	67.80	RNA polymerase n=2 Tax=Auxenochlorella protothecoi...	[more]
DNA-directed	6.940e-18	61.02	RNA polymerase n=1 Tax=Helicosporidium sp. ATCC 50...	[more]
DNA-directed	1.010e-17	64.41	RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=9...	[more]
DNA-directed	1.210e-17	64.41	RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=...	[more]
DNA-directed	3.240e-17	66.10	RNA polymerase n=2 Tax=Monodopsidaceae TaxID=42507...	[more]
DNA-directed	4.390e-17	61.02	RNA polymerase n=1 Tax=Chlorella variabilis TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs78052	contig	H-canaliculatus_M_contigs78052:2..504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7FQU5
Preferred name	RpoT
PFAMs	RNA_pol,RPOL_N
Model size	177
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00960,ko:K10908,ko:K11446
Hectar predicted targeting category	other localisation
GOs	GO:0000428,GO:0000959,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034245,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098798,GO:0140053,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons	2
Evalue	4.91e-30
EggNOG OGs	COG5108@1\|root,KOG1038@2759\|Eukaryota
EC	2.7.7.6
Description	DNA-directed 5'-3' RNA polymerase activity
Cds size	177
COG category	K
BRITE	ko00000,ko01000,ko01009,ko03029,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854116.8897853-CDS-H-canaliculatus_M_contigs78052:1..46	1696854116.8897853-CDS-H-canaliculatus_M_contigs78052:1..46	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs78052 2..46 +
1696854116.9025886-CDS-H-canaliculatus_M_contigs78052:372..504	1696854116.9025886-CDS-H-canaliculatus_M_contigs78052:372..504	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs78052 373..504 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs78052.1.1	prot_H-canaliculatus_M_contigs78052.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs78052 2..504 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs78052:2..504+
coding sequence from alignment at H-canaliculatus_M_contigs78052:2..504+

protein sequence of mRNA_H-canaliculatus_M_contigs78052.1.1

>prot_H-canaliculatus_M_contigs78052.1.1 ID=prot_H-canaliculatus_M_contigs78052.1.1|Name=mRNA_H-canaliculatus_M_contigs78052.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=59bp
GLPVLQPYRRTNTFHVQTLLQGVHIREDNDKLPVAVKRQTTAFPPNFVHS
LDSTHMMMT

mRNA from alignment at H-canaliculatus_M_contigs78052:2..504+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs78052.1.1 ID=mRNA_H-canaliculatus_M_contigs78052.1.1|Name=mRNA_H-canaliculatus_M_contigs78052.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=503bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78052:2..504+ (Hapterophycus canaliculatus Oshoro7m male)
GGCTTGCCCGTGTTGCAGCCCTACCGGCGGACGAACACATTCCATGTGTG
GTGTGTGTCTTGTGTTGTCTGCTACGCAGTATGGAATGGGGCGGAAATAC
ACCTTTTGCGGCGGCGGCGGTCGGTGCAGCAAGGAGCACTGTGGCAGTAG
GTGTTGAGACACCCGTAAGCGGTGAGCCTTAGATGCAACCGTTCGACGGT
ATCCTGCCTCGTCTACTTTCCGGCCCACCCCTGGCCACGCTAGAGCAGGT
TGTCCGTTCGATGCAGCCATCCATCGTCGGGTTGGCTTCTGTGGCGCCCA
ATTATTTTTTGTACAGTTATGTGGTCGTACCCACAAGCGTTTCCTCGCTG
AATTTTTGGAACTCCCCTCAGGTGCAAACGCTGCTGCAGGGCGTTCACAT
CCGAGAGGACAACGACAAGCTCCCGGTAGCGGTGAAGAGGCAGACCACGG
CCTTCCCCCCAAACTTCGTCCACTCGTTGGACTCGACGCATATGATGATG
ACG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78052:2..504+

>mRNA_H-canaliculatus_M_contigs78052.1.1 ID=mRNA_H-canaliculatus_M_contigs78052.1.1|Name=mRNA_H-canaliculatus_M_contigs78052.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=177bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78052:2..504+ (Hapterophycus canaliculatus Oshoro7m male)
GGCTTGCCCGTGTTGCAGCCCTACCGGCGGACGAACACATTCCATGTGCA
AACGCTGCTGCAGGGCGTTCACATCCGAGAGGACAACGACAAGCTCCCGG
TAGCGGTGAAGAGGCAGACCACGGCCTTCCCCCCAAACTTCGTCCACTCG
TTGGACTCGACGCATATGATGATGACG