mRNA_H-canaliculatus_M_contigs78048.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78048.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78048.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78048.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB4_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.100e-43
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 VNVDDFVGGVKEYRSLSGRPGSQERPKAGYSFYKSLQQTMLSRQLTEYAIFSSEARRLLLYMATAKAPDELYFPTLTQLDERFSSM 258
            VNVDDF+GGVKEYR++SG+ GSQERPK  Y F+KSLQQTMLSRQLTEYAI SSEARRLLLYMAT+KAPDELYFPTLTQLDER+SSM
Sbjct:   63 VNVDDFMGGVKEYRTVSGKTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSM 148
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BLAST of mRNA_H-canaliculatus_M_contigs78048.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR7_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 5.190e-42
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 VNVDDFVGGVKEYRSLSGRPGSQERPKAGYSFYKSLQQTMLSRQLTEYAIFSSEARRLLLYMATAKAPDELYFPTLTQLDERFSSM 258
            VNVDDF+GGVKEYR++SG  GSQERPK  Y F+KSLQQTMLSRQLTEYAI SSEARRLLLYMAT+KAPDELYFPTLTQLDER+SSM
Sbjct:  178 VNVDDFMGGVKEYRTMSGNTGSQERPKTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSM 263
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BLAST of mRNA_H-canaliculatus_M_contigs78048.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PXW9_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 6.670e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 VNVDDFVGGVKEYRSLSGRPGSQERPKAGYSFYKSLQQTMLSRQLTEYAIFSSEARRLLLYMATAKAPDELYFPTLTQ 234
            V +D+FVGG ++  +   RP    R   G  FYKSLQQT L R   +YA++  E+RR+LL+MA +KAPDE++FPT+ Q
Sbjct:  206 VTIDNFVGGTED--TSYTRPRDDLR---GIKFYKSLQQTTLHRDFVDYAVYGIESRRILLFMANSKAPDEIFFPTVLQ 278
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BLAST of mRNA_H-canaliculatus_M_contigs78048.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7W1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.770e-13
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 VNVDDFVGGVKEYRSLSGRPGSQERPKAGYSFYKSLQQTMLSRQLTEYAIFSSEARRLLLYMATAKAPDELYFPTLTQL 237
            V VD F G  +E R     P  +      Y+FYKSLQQT+LSR   E A+ + E+RRLLLY+AT++APDE++FPTL  L
Sbjct:  227 VFVDMFDGRSREVRGFPRSPPKE------YTFYKSLQQTVLSRVFVESAVHAPESRRLLLYLATSEAPDEIFFPTLLHL 299
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BLAST of mRNA_H-canaliculatus_M_contigs78048.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.120e-12
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   67 QERPKAGYSFYKSLQQTMLSRQLTEYAIFSSEARRLLLYMATAKAPDELYFPTLTQ 234
            +  P  G  FYKSLQQT+LSR+  EY+ ++ EARR+LLY+A +KAPDEL+FPT  Q
Sbjct:  240 EHMPTLGMKFYKSLQQTVLSREFCEYSCYALEARRILLYLANSKAPDELFFPTALQ 295
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BLAST of mRNA_H-canaliculatus_M_contigs78048.1.1 vs.
Match: Core-2/I-branching (enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.970e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    1 VNVDDFVGGVKEYRSLSGRPGSQERPKAGYSFYKSLQQTMLSRQLTEYAIFSSEARRLLLYMATAKAPDELYFPTLTQLDERFSS 255
            V VDDF G V  + +   +P    R   G+ FYKSLQQ ++SR    +A++S++ARRLLL  A+  APDE++FPTL Q  + + S
Sbjct:  189 VVVDDFAGMV--HPTGFSKPADSMRA-LGFQFYKSLQQMVISRDFCRHAVYSADARRLLLVTASLLAPDEVFFPTLLQQSDSYRS 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78048.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized3.100e-4386.05protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized5.190e-4286.05protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical6.670e-1448.72protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized1.770e-1350.63protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Hypothetical1.120e-1258.93protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Core-2/I-branching9.970e-1244.71enzyme-domain-containing protein n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78048contigH-canaliculatus_M_contigs78048:136..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons1
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854116.8467891-CDS-H-canaliculatus_M_contigs78048:135..3961696854116.8467891-CDS-H-canaliculatus_M_contigs78048:135..396Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78048 136..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78048.1.1prot_H-canaliculatus_M_contigs78048.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78048 136..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78048.1.1

>prot_H-canaliculatus_M_contigs78048.1.1 ID=prot_H-canaliculatus_M_contigs78048.1.1|Name=mRNA_H-canaliculatus_M_contigs78048.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=87bp
VNVDDFVGGVKEYRSLSGRPGSQERPKAGYSFYKSLQQTMLSRQLTEYAI
FSSEARRLLLYMATAKAPDELYFPTLTQLDERFSSM*
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mRNA from alignment at H-canaliculatus_M_contigs78048:136..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78048.1.1 ID=mRNA_H-canaliculatus_M_contigs78048.1.1|Name=mRNA_H-canaliculatus_M_contigs78048.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=261bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78048:136..396+ (Hapterophycus canaliculatus Oshoro7m male)
GTGAACGTGGACGACTTTGTTGGGGGCGTGAAGGAGTACCGCAGCCTGAG
CGGCAGGCCGGGTTCCCAGGAGAGGCCCAAGGCGGGCTACAGCTTCTACA
AGTCCCTGCAGCAGACGATGCTGTCGCGGCAGCTCACGGAGTACGCCATC
TTTAGCTCGGAGGCGCGGCGGCTGTTGCTGTACATGGCGACGGCCAAGGC
TCCCGATGAGCTTTACTTCCCGACCCTGACGCAGCTGGATGAGAGGTTCT
CCTCCATGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78048:136..396+

>mRNA_H-canaliculatus_M_contigs78048.1.1 ID=mRNA_H-canaliculatus_M_contigs78048.1.1|Name=mRNA_H-canaliculatus_M_contigs78048.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=261bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78048:136..396+ (Hapterophycus canaliculatus Oshoro7m male)
GTGAACGTGGACGACTTTGTTGGGGGCGTGAAGGAGTACCGCAGCCTGAG
CGGCAGGCCGGGTTCCCAGGAGAGGCCCAAGGCGGGCTACAGCTTCTACA
AGTCCCTGCAGCAGACGATGCTGTCGCGGCAGCTCACGGAGTACGCCATC
TTTAGCTCGGAGGCGCGGCGGCTGTTGCTGTACATGGCGACGGCCAAGGC
TCCCGATGAGCTTTACTTCCCGACCCTGACGCAGCTGGATGAGAGGTTCT
CCTCCATGTAA
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