mRNA_H-canaliculatus_M_contigs78.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI) HSP 1 Score: 272 bits (696), Expect = 4.420e-80 Identity = 132/141 (93.62%), Postives = 134/141 (95.04%), Query Frame = 2
Query: 2 AAGLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGEESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILNA 424
AAGLS+IVPIKVLRLFTA QLEIAVAGEPEFDI WKEHTEYKGYRPDDDTV FFWKVIESMS EDQSGFVRFAWGRSRLPPK FWRVNMKLLRSNM EESLPVSHTCFFSIELPPY+TEERMRKGLLTAVHFGMGGILNA
Sbjct: 6461 AAGLSEIVPIKVLRLFTAAQLEIAVAGEPEFDIPCWKEHTEYKGYRPDDDTVQFFWKVIESMSPEDQSGFVRFAWGRSRLPPKPFWRVNMKLLRSNMSEESLPVSHTCFFSIELPPYSTEERMRKGLLTAVHFGMGGILNA 6601
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C961_9STRA) HSP 1 Score: 197 bits (502), Expect = 1.990e-57 Identity = 92/141 (65.25%), Postives = 110/141 (78.01%), Query Frame = 2
Query: 2 AAGLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGEESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILNA 424
A GL DIVP+ LRLFT QLE+AVAG+P FD+ W+ HTEYKG+ D +TV FW+V+ S++ ++QSGFVRFAWGRSRLPP A W NMKL SN G +LPVSHTCFFS+ELP Y TE+ MR+GLLTA+HFG GILNA
Sbjct: 287 ARGLGDIVPLSALRLFTWDQLEVAVAGDPAFDLDLWRAHTEYKGFDADGETVALFWRVLGSLTPQEQSGFVRFAWGRSRLPPLAHWTTNMKL--SNRGNAALPVSHTCFFSVELPDYKTEDEMRRGLLTAIHFGACGILNA 425
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: Hect (e3 ubiquitin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSE1_9STRA) HSP 1 Score: 174 bits (442), Expect = 4.650e-46 Identity = 84/131 (64.12%), Postives = 95/131 (72.52%), Query Frame = 2
Query: 2 AAGLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGEESLPVSHTCFFSIELPPYTTEERMRKGLLTAV 394
A GL +V L L T Q+LE V G P FD+AFWK HT Y GY DD T+ FWKV+ES S E+QSGFVRFAWGRSRLPPK W NM++ R N GE+SLP SHTCFFSIELPPY +E MRKGLLTA+
Sbjct: 1458 ARGLYAVVARDTLLLLTWQELETLVCGSPTFDMAFWKAHTTYAGYSKDDLTIQLFWKVLESFSHEEQSGFVRFAWGRSRLPPKNAWYKNMQISRRNAGEDSLPASHTCFFSIELPPYQSEAAMRKGLLTAI 1588
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G912_9STRA) HSP 1 Score: 165 bits (418), Expect = 4.860e-46 Identity = 74/139 (53.24%), Postives = 104/139 (74.82%), Query Frame = 2
Query: 8 GLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGEESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILNA 424
G++ +VP + L+L T Q+LE+AVAG PE ++A ++HTEY GY DD + FW+V+E ++E+++ ++RF WGRSRLP + W MK+ R + +ESLP SHTCFFSIELPPY +++ MR+ LL AVHFG+GGILNA
Sbjct: 183 GIAAVVPARALKLMTWQELEVAVAGRPEINVALLRKHTEYDGYHRDDPVIQRFWRVMEEFTNEERTLYLRFVWGRSRLPIQRRWPKKMKITRRSASDESLPHSHTCFFSIELPPYGSDQVMRRRLLAAVHFGLGGILNA 321
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: HECT-type (E3 ubiquitin transferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZC0_9STRA) HSP 1 Score: 155 bits (392), Expect = 2.590e-44 Identity = 75/140 (53.57%), Postives = 99/140 (70.71%), Query Frame = 2
Query: 2 AAGLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGEESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILN 421
A G+ +++P + L LF++ QLE V G P FD+ WK+ T+ G D TV FWKV+E+++ ++ SGFVRFAWGRSRLP + M+L +N G +LPVSHTCFFS+ELP Y TEE MR GLLTA+H+G+GGILN
Sbjct: 10 ARGMQEVIPSRALWLFSSSQLETLVCGNPVFDMDMWKKKTDSTGVS--DKTVALFWKVMETLTQKELSGFVRFAWGRSRLPAAKEFTTKMRL--TNGGTATLPVSHTCFFSVELPEYPTEEAMRHGLLTAIHYGVGGILN 145
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D699_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.870e-43 Identity = 72/140 (51.43%), Postives = 104/140 (74.29%), Query Frame = 2
Query: 8 GLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAF-WRVNMKLLRSN-MGEESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILN 421
GL +VP+++L+LFT QQ E VAG+P+ D+ K HTEY+G+RP D +++FW+ +E ++ +++S F+RF WGRSRLP K W K+ R +G+E+LPV+HTCFFSIELP Y+TEE ++ LLTA+ +G+GGILN
Sbjct: 120 GLGCVVPLRLLQLFTWQQAEELVAGKPDVDLEDLKRHTEYRGFRPTDPAIVYFWRAMEGLNMDERSQFIRFVWGRSRLPLKGRPWPQTFKIQRQGGVGDETLPVTHTCFFSIELPDYSTEEILKTRLLTAITYGVGGILN 259
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: HECT (domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQB5_9STRA) HSP 1 Score: 147 bits (372), Expect = 5.870e-41 Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 2
Query: 2 AAGLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGE--ESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILNA 424
A G + + P +VL L T Q+LE+ G P+ D+A W+ HT Y GY DD TV FW+V+ S E ++ FVRFAWGRSRLP + W KL + + SLPV+HTCFFS+ELPPYTT E MR LL + FG+GGIL A
Sbjct: 31 ARGFATLFPRRVLTLLTWQELELLTCGSPKIDLALWQRHTRYDGYAEDDPTVRLFWEVLGDFSDEQRTDFVRFAWGRSRLP-RGKWPQPFKLSKKGGRDATHSLPVAHTCFFSVELPPYTTREIMRSRLLATITFGLGGILMA 172
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418G151_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.220e-39 Identity = 76/141 (53.90%), Postives = 95/141 (67.38%), Query Frame = 2
Query: 8 GLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGEE--SLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILNA 424
GLS + P++VL L Q++E+ G P+ DIA WK+HT Y GY DDTV FW V+ S S E +S FVRFAWGRSRLP + W KL + + SLPV+HTCFFS+ELPPYTT+ERM LL ++FG+GGIL A
Sbjct: 434 GLSTLFPVRVLTLLNWQEMEMLSCGTPKIDIALWKQHTRYDGYTDQDDTVRLFWDVMASFSDEQRSDFVRFAWGRSRLP-RGKWPQPFKLTKKAGRDSVLSLPVAHTCFFSVELPPYTTKERMHDMLLATINFGLGGILIA 573
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CS48_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.060e-39 Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 2
Query: 2 AAGLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMG------EESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILN 421
A G ++P++ L L T + E+ V G FD+A+W+ HT Y GY D+ + FW V+ + E +S FVRFAWGRSRLPP+ W +M++ RSN+ + SLP+SHTCFFS+ELPPYT+ E MR+GL + +G+GG+LN
Sbjct: 445 ARGFDMVLPLRALALHTCAEAEVVVCGRASFDMAWWRTHTNYAGYEDTDEVIQNFWCVVNAWGDEQRSNFVRFAWGRSRLPPRESWYKDMQISRSNISGGAEAIDSSLPMSHTCFFSVELPPYTSIEAMRRGLNICITYGLGGVLN 590
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQP9_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.060e-39 Identity = 70/142 (49.30%), Postives = 101/142 (71.13%), Query Frame = 2
Query: 8 GLSDIVPIKVLRLFTAQQLEIAVAGEPEFDIAFWKEHTEYKGYRPDDDTVIFFWKVIESMSSEDQSGFVRFAWGRSRLPPKAF-WRVNMKLLRSN---MGEESLPVSHTCFFSIELPPYTTEERMRKGLLTAVHFGMGGILN 421
GL+ +VP+++L+LFT QQ+E VAG+PE D+ K HTEY+G+ P+ + FFWK +E++S ++S F+RF WGRSRLP K W K+ R + + +LP +HTCFFSIELP Y++EE + LLTA+++G+GGILN
Sbjct: 35 GLACVVPLRILQLFTWQQVEELVAGKPEVDLDDLKRHTEYRGFPPNAPAIRFFWKAMENLSHVERSQFIRFVWGRSRLPLKGRPWPQTFKIQRMDGVTNPDATLPETHTCFFSIELPAYSSEEICNQRLLTAINYGVGGILN 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs78.2.1 >prot_H-canaliculatus_M_contigs78.2.1 ID=prot_H-canaliculatus_M_contigs78.2.1|Name=mRNA_H-canaliculatus_M_contigs78.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=81bp MSSEDQSGFVRFAWGRSRLPPKAFWRVNMKLLRSNMGEESLPVSHTCFFSback to top mRNA from alignment at H-canaliculatus_M_contigs78:8086..9663+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs78.2.1 ID=mRNA_H-canaliculatus_M_contigs78.2.1|Name=mRNA_H-canaliculatus_M_contigs78.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1578bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78:8086..9663+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78:8086..9663+ >mRNA_H-canaliculatus_M_contigs78.2.1 ID=mRNA_H-canaliculatus_M_contigs78.2.1|Name=mRNA_H-canaliculatus_M_contigs78.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=243bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78:8086..9663+ (Hapterophycus canaliculatus Oshoro7m male)back to top |