mRNA_H-canaliculatus_M_contigs7783.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7783.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7783.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: Flavoprotein (Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G765_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.180e-62
Identity = 110/135 (81.48%), Postives = 119/135 (88.15%), Query Frame = 1 
Query:    1 QDRPASSSFVSGSAPDEFYSALVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAEQTWKRGEDDGRTRWEDGQASRNRPANQGMGDADFVYNWEPERFHHFPWRP 405
            +DRPA+ SFVSG+ PDEFYSALVGDAAHP RPSLGQGANMALEDAVQLALVLRET SIE+ALR+YDSARVLRCAKLQGDS FVAEQ  K GEDD      DGQASRNRPAN+GMGDA+FVYNWEP + HHFPW+P
Sbjct:  330 EDRPATKSFVSGAGPDEFYSALVGDAAHPTRPSLGQGANMALEDAVQLALVLRETTSIEDALRQYDSARVLRCAKLQGDSDFVAEQALKLGEDDWPAHGGDGQASRNRPANKGMGDAEFVYNWEPLKLHHFPWQP 464
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: FAD-dependent (monooxygenase n=2 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SRU9_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 2.790e-8
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1 
Query:   64 LVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAEQTWKRGEDDGRTRWEDGQASRNRPANQGMGDA---------DFVYNWEPE-RFHH 390
            L+GDAAHP  P+LGQGAN   EDA +LAL   +  SIEEAL  Y+  R+ R   +Q  SA       K G++          A+    ANQ M +          D+V+N++PE +FH+
Sbjct:  284 LLGDAAHPMSPALGQGANSTFEDAYELALCCSQASSIEEALARYEQRRIPRTKLMQTRSALA-----KMGDN----------ATDREAANQQMQEQSQMSREEFEDWVFNYKPEVKFHY 387
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: Zeaxanthin (epoxidase n=2 Tax=Calothrix TaxID=1186 RepID=K9V140_9CYAN)

HSP 1 Score: 65.9 bits (159), Expect = 6.730e-8
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:   64 LVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAEQTWKRGEDDGRTRWEDGQASRNRPANQGMGDA---------DFVYNWEP 375
            L+GDAAHP  P+LGQGAN   EDA +LAL   +  SIEEAL  Y+  R+ R   +Q  SA             G TR+    A+ + P +Q M +          D+V+N++P
Sbjct:  287 LLGDAAHPMAPALGQGANSTFEDAYELALCFSQASSIEEALATYEQRRIPRTELIQNRSAL------------GETRY---YATNSEPVDQQMQEQSQMTSEEYQDWVFNYKP 384
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: 2-polyprenyl-6-methoxyphenol (hydroxylase n=3 Tax=Stigmatella TaxID=40 RepID=A0A1H7PBP1_STIAU)

HSP 1 Score: 65.9 bits (159), Expect = 7.100e-8
Identity = 43/105 (40.95%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:   64 LVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDS-AFVAEQTWKRGEDDGRTRWEDGQASRNRPANQGMGDADFVYNWEP 375
            L+GDAAHP  P+LGQGAN A+EDA  LAL L+E + +   LR Y++ R  R A LQ  S AF A   W     +    W      R  P     G    ++ WEP
Sbjct:  284 LLGDAAHPMAPNLGQGANSAIEDAFMLALALKEAEDVPSGLRAYEAWRKPRTALLQWQSWAFGAMGHWA----NPAAVWLRDGLMRRLPRRLVTGGLQRIWGWEP 384
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: FAD-dependent (monooxygenase n=1 Tax=Atlanticothrix silvestris CENA357 TaxID=1725252 RepID=A0A8J7HG97_9NOST)

HSP 1 Score: 65.5 bits (158), Expect = 9.060e-8
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   64 LVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAEQTWK 267
            L+GDAAHP  PSLGQGAN A EDA +L+  L    +IE AL  YDS+R+ R   +Q  SAF   + ++
Sbjct:  295 LLGDAAHPMVPSLGQGANTAFEDAWELSQYLTHAPNIESALTSYDSSRIQRTQVIQARSAFQGSRAYE 362
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: FAD-binding (monooxygenase n=1 Tax=Nostoc minutum NIES-26 TaxID=1844469 RepID=A0A367Q6Q1_9NOSO)

HSP 1 Score: 65.5 bits (158), Expect = 9.060e-8
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   61 ALVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAF 246
            AL+GDAAHP  P+LGQGAN A EDA +LAL   E  SI+EAL  Y+  R+ R   +Q  SA 
Sbjct:  296 ALLGDAAHPMAPALGQGANSAFEDAYELALCFSEASSIQEALANYEQRRIPRTQLIQTRSAL 357
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: NAD(P)-binding (protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TSK8_9CYAN)

HSP 1 Score: 65.5 bits (158), Expect = 9.610e-8
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    4 DRPASSSFVSGSAPDEFYSALVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFV 249
            DRP  SS+  G         L+GDAAHP  PSLGQGA+ A EDA  LAL +    S+E A+  Y++AR+ R   +Q  SAFV
Sbjct:  287 DRPPVSSWSQGRV------TLLGDAAHPMAPSLGQGASTAFEDARILALCIGSASSLESAIASYETARIERTKIIQARSAFV 362
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: FAD-dependent (monooxygenase n=1 Tax=Rivularia sp. T60_A2020_040 TaxID=2774335 RepID=UPI001A0D8C7C)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-7
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   64 LVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAEQTWK 267
            L+GDAAHP  PSLGQGAN A EDA +LA  L + D++E AL +YD +RV R   +Q  SA    ++++
Sbjct:  288 LLGDAAHPMIPSLGQGANTAFEDAWELANYLSDCDNLESALAKYDQSRVERTQIIQARSAIQGSRSYE 355
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: FAD-dependent (monooxygenase n=2 Tax=Klebsiella TaxID=570 RepID=UPI0018FFAE3A)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-7
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   64 LVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAE 255
            LVGDA H   P LGQGA MA+EDA+ L   L++TDS+  AL  +D+ R  RC ++   S  V E
Sbjct:   20 LVGDAVHATTPHLGQGAGMAIEDAIVLREALQQTDSVAAALAHFDARRRPRCQQIWAASLQVGE 83
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BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Match: FAD-dependent (monooxygenase n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001915CAF3)

HSP 1 Score: 60.1 bits (144), Expect = 1.750e-7
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   64 LVGDAAHPARPSLGQGANMALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAE 255
            LVGDA H   P LGQGA MA+EDA+ L   L++TDS+  AL  +D+ R  RC ++   S  V E
Sbjct:   37 LVGDAVHATTPHLGQGAGMAIEDAIVLREALQQTDSVAAALAHFDARRRPRCQQIWAASLQVGE 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7783.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Flavoprotein4.180e-6281.48Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
FAD-dependent2.790e-838.66monooxygenase n=2 Tax=unclassified Moorena TaxID=2... [more]
Zeaxanthin6.730e-838.05epoxidase n=2 Tax=Calothrix TaxID=1186 RepID=K9V14... [more]
2-polyprenyl-6-methoxyphenol7.100e-840.95hydroxylase n=3 Tax=Stigmatella TaxID=40 RepID=A0A... [more]
FAD-dependent9.060e-850.00monooxygenase n=1 Tax=Atlanticothrix silvestris CE... [more]
FAD-binding9.060e-854.84monooxygenase n=1 Tax=Nostoc minutum NIES-26 TaxID... [more]
NAD(P)-binding9.610e-847.56protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607... [more]
FAD-dependent1.210e-750.00monooxygenase n=1 Tax=Rivularia sp. T60_A2020_040 ... [more]
FAD-dependent1.400e-748.44monooxygenase n=2 Tax=Klebsiella TaxID=570 RepID=U... [more]
FAD-dependent1.750e-748.44monooxygenase n=1 Tax=Klebsiella pneumoniae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7783contigH-canaliculatus_M_contigs7783:2363..4507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G765
PFAMsFAD_binding_3
Model size1550
Max annot lvl2759|Eukaryota
KEGG rclassRC00046,RC00389
KEGG koko:K00480,ko:K00486
KEGG ReactionR00818,R01960,R05632,R06915,R06936,R06939
KEGG Pathwayko00380,ko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00380,map00621,map00624,map00626,map01100,map01120,map01220
KEGG ModuleM00038
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.92e-43
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
EC1.14.13.1,1.14.13.9
DescriptionFAD binding
Cds size336
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854115.0034785-UTR-H-canaliculatus_M_contigs7783:2362..34591696854115.0034785-UTR-H-canaliculatus_M_contigs7783:2362..3459Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7783 2363..3459 -
1696854115.0463033-UTR-H-canaliculatus_M_contigs7783:4390..45071696854115.0463033-UTR-H-canaliculatus_M_contigs7783:4390..4507Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7783 4391..4507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854115.0167387-CDS-H-canaliculatus_M_contigs7783:3459..37411696854115.0167387-CDS-H-canaliculatus_M_contigs7783:3459..3741Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7783 3460..3741 -
1696854115.0310552-CDS-H-canaliculatus_M_contigs7783:4336..43901696854115.0310552-CDS-H-canaliculatus_M_contigs7783:4336..4390Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7783 4337..4390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7783.1.1prot_H-canaliculatus_M_contigs7783.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7783 3460..4390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7783.1.1

>prot_H-canaliculatus_M_contigs7783.1.1 ID=prot_H-canaliculatus_M_contigs7783.1.1|Name=mRNA_H-canaliculatus_M_contigs7783.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
MALEDAVQLALVLRETDSIEEALREYDSARVLRCAKLQGDSAFVAEQTWK
RGEDDGRTRWEDGQASRNRPANQGMGDADFVYNWEPERFHHFPWRPSKQG
ADGTGVSSSGS*
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mRNA from alignment at H-canaliculatus_M_contigs7783:2363..4507-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7783.1.1 ID=mRNA_H-canaliculatus_M_contigs7783.1.1|Name=mRNA_H-canaliculatus_M_contigs7783.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2145bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7783:2363..4507- (Hapterophycus canaliculatus Oshoro7m male)
CAGGATCGACCCGCGTCCAGTTCTTTCGTGTCCGGCTCTGCGCCCGACGA
GTTCTACTCTGCCCTCGTGGGCGACGCGGCGCATCCAGCGAGGCCATCCC
TTGGGCAGGGAGCCAACATGGCGCTGGAGGACGCGGTGCAATTGGCCTTG
GTGCTACGCGAAACAGATTCGGTGCGTTGTTGTTGTTGTTGTTGTTGTTG
TTGCTTGTCCGAGTGGCCCTTCGCCGAAACCTAGGCCGGAGTGACTAGTA
GAGGGCTTGAAAACCGCGTGCAGTCAGGTAGCGGAAATGTTCTGTGTTTC
ACCTATCTGGGTGTGAGGATGGAGAGGGAATTCGGTGCATATCGCATAAA
GTGGTTACCGTTTGCCTATTGCACGCCACTACTCGCACTTCTGTGACTCC
CGCGTCGCGTCCATCGCGTATTGAAAGTGTTTTGTTGCCTCTCTCTGAAC
AAGCACTGGTTCCTCCATCTACTTGAGTCAAAGCCTCTCAACCATACGGA
GGCAAGGTACACATACGACCTTTGAGCTTCGTTATGGAGTTATGGAGAGT
CGTGCAACTGCGGTCCCCGCTAAGGCAGGGCCCAACCCGATGGATCGATT
CCCATCGCAAGAGCCGACCAACGGAACTCACGCCCAACACCACCGCCAGG
GCGAACGCTATCTCTGTTCCACCTACAGAGCCTCTCCTTGTCTCCTTCCC
ACGGCTACCTTCCCTCGCCCCGAACAACCCCCGATGCTCCTTTGAACAAC
GGGTGGCGCACGGCAGATAGAGGAGGCCTTAAGGGAGTACGATTCTGCCC
GCGTTCTCCGGTGCGCGAAGCTGCAGGGAGACTCCGCGTTCGTGGCCGAG
CAAACCTGGAAGCGAGGAGAAGACGACGGCCGCACGCGGTGGGAGGACGG
CCAGGCGAGCAGGAACAGGCCCGCCAACCAGGGCATGGGCGACGCCGATT
TTGTGTACAACTGGGAGCCGGAGCGGTTCCACCATTTTCCGTGGCGACCC
AGCAAGCAGGGGGCGGATGGAACGGGAGTTTCCTCTTCTGGAAGCTAGGC
GCGAAAGCTGGCAGCAAAGGAGAAGGCGGGGGTTGACCGTGCGTGTTTGT
TTGGCGGGTTGGTTGTAGACGTGAGGGTACGTTGTTGCGCACTCCGAGGA
GAGTTTAGCAGGTGGGTTCAGTATAGACGAGCGAGGCGACGTGAGAAGTT
TGGATCGCGTGCACGTTTTTAGCGCTTGGCCTCGAGCAGGTGTAAAGTAA
TAATGCTGTTCCGAAACGGAGGCGACGTCGACGGGGTTGACTTCGAAAAG
CTTGTCGGAGACGATCCACGTCGCCCACCCTCTCAGGGCTGTAAGTAGAT
CTCGCTAGGCTTGGGTAGATAGTGCCAGGGCAGTGCGCGTGCCCTCCCTC
GTCGTTGAGGGTTTGAAAAGTCGAACATCGCACGGCGTTCGATTGGTGTG
CCTGAGGGTGTTCTCGACGTCAAGCATCAACCATTTCTGTCGAGCTTTCC
TGTATCTGTGTTGTGTGTCGTGTCCCTATCGCGCGATTTGTGGGTTCTAC
AAGTCGCTCGCAAGATCATTTTCGCGAGAGAAGCGCTTACCCACGGACTG
AATGGCGAGGGGAGATAGACGTGCGGGGCGCGGGACATCGTTTTTGATGT
TCACACAGAAGTCGTGCATCTACTTTTCAACGCTCCTGTGTTTTGGGTTG
CTAGTTGCTGGATATCGTAGGGACGATCTTCGTCTACCAGGTGGTGGATG
CAGGAGAGTCGGTAACGAGCCGACCTGAGGTAAAAATCTGCGAGATGCCG
CAGAATTTTGCCCGTGACAAATCATTTCAGCGTCACTCATTATTTTGTTG
ATGTTGCTGGTAGTATGGAGAGGTCCGTGGAGATTGGTTGATTTCTTGAT
TGATGGGTCATTTCCCGCCCAAGAAGAGTTTCGTGCTCTAGTCGGATCGC
TCTCCGTCATGTCTGTGGCGACAAATAAATCAACAAGTCATCGGACACCG
CTTCGCAATGGAACCGAGATGCACTCGATGAAAGGAGTGTTGGAAAAAAT
ATGCAAGTGTAAAAGTTGGCTGGAGCAAGTCGAGGCAACGACCCGAGACC
CCCAAAAAAATGAAAAACCGAAGAAAGTGGCATTAACCCGAAACC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7783:2363..4507-

>mRNA_H-canaliculatus_M_contigs7783.1.1 ID=mRNA_H-canaliculatus_M_contigs7783.1.1|Name=mRNA_H-canaliculatus_M_contigs7783.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7783:2363..4507- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGCTGGAGGACGCGGTGCAATTGGCCTTGGTGCTACGCGAAACAGA
TTCGATAGAGGAGGCCTTAAGGGAGTACGATTCTGCCCGCGTTCTCCGGT
GCGCGAAGCTGCAGGGAGACTCCGCGTTCGTGGCCGAGCAAACCTGGAAG
CGAGGAGAAGACGACGGCCGCACGCGGTGGGAGGACGGCCAGGCGAGCAG
GAACAGGCCCGCCAACCAGGGCATGGGCGACGCCGATTTTGTGTACAACT
GGGAGCCGGAGCGGTTCCACCATTTTCCGTGGCGACCCAGCAAGCAGGGG
GCGGATGGAACGGGAGTTTCCTCTTCTGGAAGCTAG
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