mRNA_H-canaliculatus_M_contigs77791.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77791.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77791.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77791.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ33_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.960e-8
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GWEAMEIGGRVLYINHSTKTTQWERPALDDEMPPPAKTTPVRQVRAR 141
            GWEA   G + +Y+NH TKTTQWE+P +   +PPP  T PV + +AR
Sbjct:   12 GWEAKRAGDQWVYLNHVTKTTQWEKPIVAKPIPPPVVTNPVARAQAR 58
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BLAST of mRNA_H-canaliculatus_M_contigs77791.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836LE28_9TRYP)

HSP 1 Score: 48.9 bits (115), Expect = 5.390e-5
Identity = 27/63 (42.86%), Postives = 33/63 (52.38%), Query Frame = 1 
Query:    4 WEAM--EIGGRVLYINHSTKTTQWERPALDDEMPPPAKTTPVRQVRARWSRTERLRAGERSPR 186
            WEA      GR  YINH+TKTT WE PA+   + PP  +TP+  VR      E    G+  PR
Sbjct:  535 WEARVDPATGRTFYINHATKTTSWEPPAVGLSVAPPMTSTPLPDVRHPSGNVEANGGGDWVPR 597
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77791.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.960e-851.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.390e-542.86protein n=1 Tax=Porcisia hertigi TaxID=2761500 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77791contigH-canaliculatus_M_contigs77791:289..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LJ33
PFAMsAAA_5,C2,FYVE,Mito_carr,WW
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K14961,ko:K19868
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Exons1
Evalue1.41e-05
EggNOG OGsCOG5021@1|root,COG5271@1|root,KOG0940@2759|Eukaryota,KOG1808@2759|Eukaryota
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Cds size189
COG categoryM
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.7043643-UTR-H-canaliculatus_M_contigs77791:288..3001696854114.7043643-UTR-H-canaliculatus_M_contigs77791:288..300Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs77791 289..300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.719076-CDS-H-canaliculatus_M_contigs77791:300..4891696854114.719076-CDS-H-canaliculatus_M_contigs77791:300..489Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77791 301..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77791.1.1prot_H-canaliculatus_M_contigs77791.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77791 301..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77791.1.1

>prot_H-canaliculatus_M_contigs77791.1.1 ID=prot_H-canaliculatus_M_contigs77791.1.1|Name=mRNA_H-canaliculatus_M_contigs77791.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=63bp
MEIGGRVLYINHSTKTTQWERPALDDEMPPPAKTTPVRQVRARWSRTERL
RAGERSPRPILPS
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mRNA from alignment at H-canaliculatus_M_contigs77791:289..489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77791.1.1 ID=mRNA_H-canaliculatus_M_contigs77791.1.1|Name=mRNA_H-canaliculatus_M_contigs77791.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77791:289..489+ (Hapterophycus canaliculatus Oshoro7m male)
GGTTGGGAAGCGATGGAAATTGGTGGGCGCGTGTTGTACATCAACCACTC
CACGAAAACGACCCAATGGGAAAGGCCGGCTCTCGACGACGAAATGCCGC
CGCCGGCGAAAACCACCCCCGTGCGGCAGGTACGAGCCCGATGGTCAAGA
ACAGAGCGGTTGCGGGCAGGGGAACGCAGTCCCCGACCAATTCTCCCCTC
G
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77791:289..489+

>mRNA_H-canaliculatus_M_contigs77791.1.1 ID=mRNA_H-canaliculatus_M_contigs77791.1.1|Name=mRNA_H-canaliculatus_M_contigs77791.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77791:289..489+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAAATTGGTGGGCGCGTGTTGTACATCAACCACTCCACGAAAACGAC
CCAATGGGAAAGGCCGGCTCTCGACGACGAAATGCCGCCGCCGGCGAAAA
CCACCCCCGTGCGGCAGGTACGAGCCCGATGGTCAAGAACAGAGCGGTTG
CGGGCAGGGGAACGCAGTCCCCGACCAATTCTCCCCTCG
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