mRNA_H-canaliculatus_M_contigs77720.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs77720.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs77720.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Polyketide (Synthase III (C-terminal region) Polyketide Synthase III (N-terminal region) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHT0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.620e-25
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1

Query:   16 RRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVLSR 180
            R+ VDFWVVHPGG AII+EVQN LGLTEEHTADSWAVL EYGNMLSPTSMFVLSR
Sbjct:  327 RKDVDFWVVHPGGSAIITEVQNGLGLTEEHTADSWAVLGEYGNMLSPTSMFVLSR 381

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Polyketide (Synthase III n=3 Tax=Phaeophyceae TaxID=2870 RepID=D8LJ35_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.380e-20
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1

Query:   16 RRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVLSR 180
            R  VDFW VHPGGR II E QN LGL+EE TADSWAVL EYGNMLSP+ MFVLSR
Sbjct:  322 RDDVDFWCVHPGGRRIIEEAQNGLGLSEEQTADSWAVLGEYGNMLSPSVMFVLSR 376

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Polyketide (synthase III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.980e-20
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1

Query:   16 RRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVLSR 180
            R  VDFW VHPGGR II E QN LGLTE+ TADSWAVL EYGNMLSP+ M+VLSR
Sbjct:  330 RGDVDFWAVHPGGRRIIEEAQNGLGLTEDQTADSWAVLNEYGNMLSPSVMYVLSR 384

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDH2_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-18
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 1

Query:   16 RRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVLSR 180
            R  +DFW VHPGGR II E QN L L+EE  ADSWAVL EYGNMLSP+ MFVLSR
Sbjct:  319 RSEIDFWSVHPGGRRIIEEAQNGLSLSEEQCADSWAVLGEYGNMLSPSVMFVLSR 373

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1U6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.590e-18
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1

Query:   16 RRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVLSR 180
            R  +DFW VHPGGR II E QN LGLTEE T+DSWAVL ++GNMLSP+ MFVL R
Sbjct:  361 RSEIDFWSVHPGGRRIIEEAQNGLGLTEEQTSDSWAVLDQFGNMLSPSVMFVLER 415

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3S2B4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.800e-17
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1

Query:   16 RRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVL 174
            +  VDFW VHPGGR II E QN LGLTEE    SW VL +YGNMLSP+ MFVL
Sbjct:   41 KEDVDFWAVHPGGRRIIEEAQNGLGLTEEQVKYSWEVLDQYGNMLSPSVMFVL 93

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C201_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.270e-16
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1

Query:   16 RRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVL 174
            +  VDFW VHPGGR II E QN LGLTEE    SW VL +YGNMLSP+ MFVL
Sbjct:  113 KEDVDFWAVHPGGRRIIEEAQNGLGLTEEQCKYSWEVLDQYGNMLSPSVMFVL 165

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPY4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.670e-15
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:   25 VDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVL 174
            +DFW VHPGGR II E QN LGLTEE    SW VL +YGNMLSP+ MFVL
Sbjct:  356 IDFWAVHPGGRRIIEEAQNGLGLTEEQCKYSWEVLRDYGNMLSPSVMFVL 405

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BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J5_AURAN)

HSP 1 Score: 76.3 bits (186), Expect = 4.630e-15
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:   25 VDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVL 174
            +DFW +HPGGR II E QN LGL+EE    SW VL++YGNMLSP+ MFVL
Sbjct:  208 MDFWAIHPGGRRIIEEAQNGLGLSEEQAKYSWTVLSQYGNMLSPSVMFVL 257

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7DYK4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.460e-15
Identity = 36/50 (72.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:   25 VDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTSMFVL 174
            VDFW VHPGGR II E QN LGLTEE    SW VL  YGNMLSP+ MFVL
Sbjct:  305 VDFWAVHPGGRRIIEEAQNGLGLTEEQCKYSWEVLDTYGNMLSPSVMFVL 354

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs77720.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Polyketide	2.620e-25	89.09	Synthase III (C-terminal region) Polyketide Syntha...	[more]
Polyketide	3.380e-20	78.18	Synthase III n=3 Tax=Phaeophyceae TaxID=2870 RepID...	[more]
Polyketide	9.980e-20	76.36	synthase III n=1 Tax=Tribonema minus TaxID=303371 ...	[more]
Hypothetical	2.200e-18	72.73	protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re...	[more]
Hypothetical	2.590e-18	70.91	protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re...	[more]
Hypothetical	4.800e-17	67.92	protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep...	[more]
Hypothetical	3.270e-16	67.92	protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep...	[more]
Hypothetical	3.670e-15	70.00	protein n=1 Tax=Rhizochromulina marina TaxID=10348...	[more]
Uncharacterized	4.630e-15	66.00	protein n=1 Tax=Aureococcus anophagefferens TaxID=...	[more]
Hypothetical	8.460e-15	72.00	protein n=1 Tax=Florenciella parvula TaxID=236787 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs77720	contig	H-canaliculatus_M_contigs77720:184..369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LJ35
PFAMs	Chal_sti_synt_C,Chal_sti_synt_N
Model size	186
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC02726,RC02970
KEGG ko	ko:K00660,ko:K13234,ko:K21384
KEGG Reaction	R01613,R06568,R07987,R07988,R07989,R08808,R08810
KEGG Pathway	ko00941,ko00945,ko01100,ko01110,ko04712,map00941,map00945,map01100,map01110,map04712
KEGG Module	M00137
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000325,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006810,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009314,GO:0009411,GO:0009416,GO:0009611,GO:0009628,GO:0009629,GO:0009705,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009812,GO:0009813,GO:0009889,GO:0009914,GO:0009926,GO:0009962,GO:0010033,GO:0010224,GO:0010817,GO:0012505,GO:0016020,GO:0019222,GO:0031090,GO:0031537,GO:0031540,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0098588,GO:0098805,GO:1901576,GO:1901700
Exons	1
Evalue	3.39e-21
EggNOG OGs	COG3424@1\|root,2S4A6@2759\|Eukaryota
EC	2.3.1.177,2.3.1.208,2.3.1.217,2.3.1.74
Description	naringenin-chalcone synthase activity
Cds size	174
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko01000,ko01008

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854114.3928754-UTR-H-canaliculatus_M_contigs77720:183..195	1696854114.3928754-UTR-H-canaliculatus_M_contigs77720:183..195	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs77720 184..195 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854114.4093428-CDS-H-canaliculatus_M_contigs77720:195..369	1696854114.4093428-CDS-H-canaliculatus_M_contigs77720:195..369	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs77720 196..369 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs77720.1.1	prot_H-canaliculatus_M_contigs77720.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs77720 196..369 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs77720:184..369+
coding sequence from alignment at H-canaliculatus_M_contigs77720:184..369+

protein sequence of mRNA_H-canaliculatus_M_contigs77720.1.1

>prot_H-canaliculatus_M_contigs77720.1.1 ID=prot_H-canaliculatus_M_contigs77720.1.1|Name=mRNA_H-canaliculatus_M_contigs77720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=58bp
MRRTVDFWVVHPGGRAIISEVQNALGLTEEHTADSWAVLAEYGNMLSPTS
MFVLSRQV

mRNA from alignment at H-canaliculatus_M_contigs77720:184..369+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs77720.1.1 ID=mRNA_H-canaliculatus_M_contigs77720.1.1|Name=mRNA_H-canaliculatus_M_contigs77720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77720:184..369+ (Hapterophycus canaliculatus Oshoro7m male)
AACCCTCGCTTTATGCGCCGAACAGTCGACTTTTGGGTTGTACACCCCGG
CGGCAGGGCAATCATTTCGGAGGTGCAAAACGCGCTCGGGCTAACGGAGG
AGCATACGGCGGACTCGTGGGCGGTGCTGGCGGAGTACGGGAACATGCTC
TCGCCCACCAGCATGTTCGTCTTGTCGAGGCAAGTG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77720:184..369+

>mRNA_H-canaliculatus_M_contigs77720.1.1 ID=mRNA_H-canaliculatus_M_contigs77720.1.1|Name=mRNA_H-canaliculatus_M_contigs77720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77720:184..369+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGCCGAACAGTCGACTTTTGGGTTGTACACCCCGGCGGCAGGGCAAT
CATTTCGGAGGTGCAAAACGCGCTCGGGCTAACGGAGGAGCATACGGCGG
ACTCGTGGGCGGTGCTGGCGGAGTACGGGAACATGCTCTCGCCCACCAGC
ATGTTCGTCTTGTCGAGGCAAGTG