mRNA_H-canaliculatus_M_contigs7772.1.3 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX39_ECTSI) HSP 1 Score: 373 bits (957), Expect = 2.140e-124 Identity = 203/263 (77.19%), Postives = 220/263 (83.65%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTP--SLRP-ADARYLLAALDRMDSVFGVFYEPSGYAAAK---DGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
GKPFC CWVHNAFVNVDGEKMSKSKGNFLTLK TLATALDVRAFRYLVVSSQYRT LGFS KSL+ AKNT++RLDKLRVALEAAAA G E GD EVS EL + +P+SL+GFDAGMNDDLNTPRAAASLFAVVKAGE+ALKR RSA AA +P SL P DA+YLLAALDRMDSVFG+FYEP+GY AA D G G+ ++P MAELLARRLAARE+KDWATADAVRDEIKALGY+VKDVKGKDPVVSRI
Sbjct: 273 GKPFCRCWVHNAFVNVDGEKMSKSKGNFLTLKSTLATALDVRAFRYLVVSSQYRTTLGFSMKSLQSAKNTLRRLDKLRVALEAAAAAGNEEERGDASEVSRELLEVVPKSLEGFDAGMNDDLNTPRAAASLFAVVKAGENALKRVRSANADGGDTAAAGGSPPQSLLPQVDAKYLLAALDRMDSVFGIFYEPAGYEAANTGGDSGGDGKEADLPGEMAELLARRLAARENKDWATADAVRDEIKALGYSVKDVKGKDPVVSRI 535
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J887_9PHAE) HSP 1 Score: 379 bits (972), Expect = 1.020e-119 Identity = 205/263 (77.95%), Postives = 222/263 (84.41%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTP--SLRP-ADARYLLAALDRMDSVFGVFYEPSGYAAA---KDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
GKPFC CWVHNAFVNVDGEKMSKSKGNFLTLK TL TALDVRAFRYLVVSSQYRT LGFS KSLE AKNT++RLDKLRVALEAAAA G EGGD EVS EL + +P+SL+GFDAGMNDDLNTPRAAASLFAVVKAGE+ALKR RSA AA +P SL P DA+YLLAALDRMDSVFG+FYEP+GY AA +D G GE ++PE MAELLARRLAARE+KDWATADAVR+EIKALGY+VKDVKGKDPVVSRI
Sbjct: 969 GKPFCRCWVHNAFVNVDGEKMSKSKGNFLTLKSTLGTALDVRAFRYLVVSSQYRTTLGFSMKSLESAKNTLRRLDKLRVALEAAAAAGNEGEGGDAREVSRELLEVVPKSLEGFDAGMNDDLNTPRAAASLFAVVKAGENALKRVRSANADDGDTAAAGGSPPQSLLPQVDAKYLLAALDRMDSVFGIFYEPAGYEAANTGRDSGGDGEEADLPEEMAELLARRLAARENKDWATADAVREEIKALGYSVKDVKGKDPVVSRI 1231
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U426_9STRA) HSP 1 Score: 224 bits (571), Expect = 5.200e-66 Identity = 127/256 (49.61%), Postives = 167/256 (65.23%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGYAAAKDGAGG-GEP-----EEVPEVMAELLARRLAARESKDWATADAVRDEIKA-LGYAVKDVKG 747
G+ FC CWVHN FVNV+ EKMSKSKGNFLTL+G+L T LDVRAFRYLVV+SQYR L F+++ L GA+ T+ RLDK++ AL A GKG E G E+ E++ + +++ GF+AGM DDLNTPRAAA+LF +VKA E ALK +P LRP+ AR +LA L++MD+V G+FYEP K+G G P +VP+ EL+ RR A+E ++WA AD RD +++ G +KD KG
Sbjct: 344 GERFCRCWVHNGFVNVENEKMSKSKGNFLTLRGSLETGLDVRAFRYLVVTSQYRMPLNFNTEGLAGARKTILRLDKVKAALTRVAREGKGAEEGG--EIDEEMQGVIDKAVAGFEAGMADDLNTPRAAAALFTLVKATEKALKG---------------DSPRLRPSGARLVLATLEQMDAVLGIFYEPPLMEGEKEGGREEGAPVVVELADVPKEAQELVMRRAEAKEKREWALADENRDLLRSRFGLILKDKKG 582
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL4_9STRA) HSP 1 Score: 214 bits (546), Expect = 3.570e-63 Identity = 132/257 (51.36%), Postives = 152/257 (59.14%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
GKPFCNCWVHN FVNV GEKMSKSKGNFLTL+G LATALDVRAFRYLVV+SQYRTML F+ L GAK+ V+RLDK R AL A L F GM+DDLN PRAAA LFA++KA E K AG SL A A ALD+MDSV GVFYEP GY +G GGE E+ + R AA+ +KDW++ADA R I A G+A+KDV G V+R+
Sbjct: 265 GKPFCNCWVHNGFVNVGGEKMSKSKGNFLTLRGALATALDVRAFRYLVVTSQYRTMLNFTPDVLAGAKSAVKRLDKARAALSKALEGXXXXXXXXXXXXXXXXXXXXXXXLAQFKGGMDDDLNAPRAAAGLFALIKAIEKEAK----AG-------------SLSAAAAHVYSEALDKMDSVLGVFYEPPGYEP--EGGQGGEEGGAVEIPPD----RAAAKAAKDWSSADAARAAITARGFAIKDVAGGGVEVTRL 498
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4N2_9STRA) HSP 1 Score: 211 bits (538), Expect = 3.550e-62 Identity = 122/259 (47.10%), Postives = 159/259 (61.39%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVAL-EAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYE-PSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
GK FC WVHN FVNV+ EKMSKSKGNFLTL+GT T L+VRAFRY VV+SQYR L FS ++L +K+ +QRLD+ R A+ EAA ++G + + SPE++ + L MNDDLNTPRA+ASLF ++K + L P L AD + +ALD + V GVFY+ P Y + + EP VP + EL+ R A++ KDWATAD +RD+I A GYAVKDVKG DPV+S++
Sbjct: 246 GKQFCRHWVHNGFVNVNNEKMSKSKGNFLTLRGTFKTPLEVRAFRYFVVTSQYRMPLNFSPEALAASKSALQRLDRFRTAVFEAAVSLGPASS---EDAPSPEIQALVESCLDNLQVAMNDDLNTPRASASLFTLMKKAQPQL-------------------PDLTAADIALVSSALDTFNRVLGVFYDLPLSYFGSDE-----EPAPVPPHILELVHLRAEAKDKKDWATADQLRDDITAAGYAVKDVKGGDPVISKL 477
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T6Z7_9STRA) HSP 1 Score: 202 bits (514), Expect = 8.950e-61 Identity = 120/265 (45.28%), Postives = 158/265 (59.62%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLA---ALDRMDSVFGVFYEPSGYAAAKDGAGGGEPEE-----VPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
GK FCNCW+HN FVN+ EKMSKSKGNFLTL+G DVRA+RYL+V+S YR L F+ ++ AK ++RLD +R L +A G D EE + E+ + + L F + DDL+TPRA ASLFAVVKA E+ KR + A D T P D L A A++ MD VFGVFY+ +++ +G G VP + EL+A R AA+++KDW AD++R I LG+AVKDVKG +P+VSRI
Sbjct: 32 GKKFCNCWLHNGFVNIGDEKMSKSKGNFLTLRGACPKPDDVRAYRYLIVTSHYRNPLSFTDAAMGAAKGALKRLDSIRSRL-GSALEGYDNSKSDVEENTNEIVAVVQKELIKFQDALADDLSTPRAVASLFAVVKAAENEFKRVKKAEK-------DDDTDDSPPLDLCGLAAVKGAIEHMDEVFGVFYDVPKASSSSEGDGADXXXXXXGATVPPEVVELVAARAAAKDAKDWELADSLRSRIGELGFAVKDVKGGEPIVSRI 288
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX31_TRICV) HSP 1 Score: 206 bits (524), Expect = 5.740e-59 Identity = 120/263 (45.63%), Postives = 160/263 (60.84%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFY------EPSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
GKPFC CW+HN FVN+ EKMSKSKGNFLTL+ + DVRA+RYLVVSS YR L F+ ++ AK ++R+D++R + A + EGG E S + +++ + L FDA + DDL+ PRAAASLF VVKA E+ KR + A V+ P L + A++ MD VFG+FY G AA ++ G + EVPE + L+A R AA+E+KDW AD +R I LGYAVKDVKG +P+VSR+
Sbjct: 356 GKPFCACWLHNGFVNIGDEKMSKSKGNFLTLRTACPKSDDVRAYRYLVVSSHYRNPLSFTEAAVGAAKGALKRMDRVREMIGEALEGEESPEGG---EGSGPIAEAVKKELSNFDAAIADDLSMPRAAASLFGVVKAAENEFKRVKKAEKANDG----VADPPLDKVGLAAVRDAMETMDQVFGIFYTVPPPKNEDGSAAVEEDEG--DDAEVPEDVMTLVAERTAAKEAKDWELADLLRARIAELGYAVKDVKGGEPLVSRV 609
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y893_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.340e-57 Identity = 112/257 (43.58%), Postives = 155/257 (60.31%), Query Frame = 1
Query: 10 FCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYE---PSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
FCNCW HN FVN+ EKMSKS GNFLTL+ T LDVRA+RYLVVSSQYR L F+ ++++ +KN + R+DK+R ++ A G + E++ ++ +P SL F+A + DDL+ PRAAA+LF++VKA E KR A SL +L A+D+MD +FGVFYE + VPE + +L++ R AA+++KDW AD++R I LG+AVKDVKG +P+VSRI
Sbjct: 317 FCNCWFHNGFVNIGDEKMSKSLGNFLTLRTACPTGLDVRAYRYLVVSSQYRNPLAFTQQAMQASKNAITRIDKIRTQIQQALDDATVEGSGASSEIAQKV---VPASLANFEAALVDDLSMPRAAAALFSIVKAAEQEFKRIAKAK----------GEASLDICGLESILKAMDQMDQIFGVFYEVPLTKEXXXXXXXXXXXDDASVPEEVLQLVSERTAAKDAKDWELADSLRSRITELGFAVKDVKGGEPIVSRI 560
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Cysteine--tRNA (ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7S4C9_PHATC) HSP 1 Score: 199 bits (506), Expect = 1.170e-56 Identity = 111/257 (43.19%), Postives = 156/257 (60.70%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGYAAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
G FCNCW HN FVN+D EKMSKS GNFLTL+G T DVRA+RYL VSSQYR L F+ +++ A+N + R+DK++ LE V + +T + EL +L+ F+ + DDL+ PRA+A+LF++VKA E LKR SL R +L A+ +MD VFG+FY + ++ E +P+ + EL+ RR AA+E+KDW ADA+R ++ LGYAVKDVKG+DP+V+++
Sbjct: 325 GNVFCNCWFHNGFVNMDNEKMSKSLGNFLTLRGACPTPDDVRAYRYLAVSSQYRQALAFTPQAMTAARNAIARMDKIKNQLEECTRVNGASVVDETTD--SELPTVARTALENFEVAICDDLSMPRASAALFSLVKAAEGELKRVNKVSDDEV---------SLDYTGLRRILDAMKQMDQVFGIFYRVP--VSEEEETAQEEALVIPDDVVELVERRTAAKEAKDWELADALRSQVTELGYAVKDVKGEDPIVTQL 568
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUP3_9EUKA) HSP 1 Score: 192 bits (487), Expect = 1.370e-56 Identity = 111/262 (42.37%), Postives = 153/262 (58.40%), Query Frame = 1
Query: 1 GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSSQYRTMLGFSSKSLEGAKNTVQRLDKLRVALEAAAAVGKGTEGGDTEEVSPELRDSLPQSLKGFDAGMNDDLNTPRAAASLFAVVKAGESALKRARSAGXXXXXXAADVSTPSLRPADARYLLAALDRMDSVFGVFYEPSGY-----AAAKDGAGGGEPEEVPEVMAELLARRLAARESKDWATADAVRDEIKALGYAVKDVKGKDPVVSRI 771
GKPFCNCW+HN FVN+D EKMSKS GNF T++ + TALDVRAFR+LV+SS YR L F +L+ A+ +V RLDKLR E A T+G D + ++ + + F+AGMNDDLNTPRA A++F +VK+ E K+ + G RPA R +L LDR+D+V GVFY P AK+ E++ E + +++ R AA+ K+W AD +RD++KA GY + D G + V R+
Sbjct: 60 GKPFCNCWIHNGFVNIDNEKMSKSLGNFKTIRDSFKTALDVRAFRWLVISSSYRNPLNFDENALKNARKSVVRLDKLRAKAEEGA-----TQGVDDDGDHAAFEAAIAKGMSAFEAGMNDDLNTPRAIAAVFQIVKSAEQLAKKGKLTG---------------RPA--RMILETLDRLDTVLGVFYIPEASHFEVEEEAKEVVV--SMEQLSESIRDMVLARQAAKLDKNWQQADELRDQLKAQGYVIVDKAGGELEVLRV 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7772.1.3 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7772.1.3 >prot_H-canaliculatus_M_contigs7772.1.3 ID=prot_H-canaliculatus_M_contigs7772.1.3|Name=mRNA_H-canaliculatus_M_contigs7772.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=258bp GKPFCNCWVHNAFVNVDGEKMSKSKGNFLTLKGTLATALDVRAFRYLVVSback to top mRNA from alignment at H-canaliculatus_M_contigs7772:3283..5053- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7772.1.3 ID=mRNA_H-canaliculatus_M_contigs7772.1.3|Name=mRNA_H-canaliculatus_M_contigs7772.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7772:3283..5053- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7772:3283..5053- >mRNA_H-canaliculatus_M_contigs7772.1.3 ID=mRNA_H-canaliculatus_M_contigs7772.1.3|Name=mRNA_H-canaliculatus_M_contigs7772.1.3|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7772:3283..5053- (Hapterophycus canaliculatus Oshoro7m male)back to top |