mRNA_H-canaliculatus_M_contigs7769.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7769.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7769.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7769.2.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.870e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 VLRRGFVAASLSLCT-CRFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEAL 156
            VLR G       LC    FELTRLHR+SVGPIVLGD+EEG CREL+R+EVEAL
Sbjct:  159 VLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEAL 211
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BLAST of mRNA_H-canaliculatus_M_contigs7769.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 7.200e-12
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 VLRRGFVAASLSLCT-CRFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEAL 156
            VLR G       LC    FELTRLHR+SVGPIVLGD+ EG CREL+RREVEAL
Sbjct:   55 VLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEAL 107
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BLAST of mRNA_H-canaliculatus_M_contigs7769.2.1 vs.
Match: Pseudouridine (synthase n=1 Tax=Spongiibacteraceae bacterium TaxID=2026793 RepID=A0A2E2K675_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 6.330e-5
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:   55 ELTRLHRVSVGPIVLGDLEEGCCRELSRREV 147
            E+  LHRVSVGPI LGDLE G CRELS  E+
Sbjct:  200 EVLSLHRVSVGPIALGDLEPGQCRELSEAEI 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7769.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Pseudouridine5.870e-1267.92synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Uncharacterized7.200e-1267.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Pseudouridine6.330e-570.97synthase n=1 Tax=Spongiibacteraceae bacterium TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7769contigH-canaliculatus_M_contigs7769:4843..4998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FV84
PFAMsPseudoU_synth_2
Model size156
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.62e-13
EggNOG OGs2D5AV@1|root,2SXY6@2759|Eukaryota
DescriptionRNA pseudouridylate synthase
Cds size156
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.0806625-CDS-H-canaliculatus_M_contigs7769:4842..49981696854114.0806625-CDS-H-canaliculatus_M_contigs7769:4842..4998Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7769 4843..4998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7769.2.1prot_H-canaliculatus_M_contigs7769.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7769 4843..4998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7769.2.1

>prot_H-canaliculatus_M_contigs7769.2.1 ID=prot_H-canaliculatus_M_contigs7769.2.1|Name=mRNA_H-canaliculatus_M_contigs7769.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=52bp
VLRRGFVAASLSLCTCRFELTRLHRVSVGPIVLGDLEEGCCRELSRREVE
AL
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mRNA from alignment at H-canaliculatus_M_contigs7769:4843..4998-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7769.2.1 ID=mRNA_H-canaliculatus_M_contigs7769.2.1|Name=mRNA_H-canaliculatus_M_contigs7769.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7769:4843..4998- (Hapterophycus canaliculatus Oshoro7m male)
GTGCTCCGCCGTGGATTCGTTGCTGCTTCCCTTTCGCTGTGCACGTGCAG
GTTTGAGTTGACCCGGCTCCACCGAGTGTCCGTCGGTCCTATTGTCCTCG
GAGATCTCGAGGAGGGCTGCTGCCGGGAGCTAAGCAGGCGGGAAGTCGAG
GCACTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7769:4843..4998-

>mRNA_H-canaliculatus_M_contigs7769.2.1 ID=mRNA_H-canaliculatus_M_contigs7769.2.1|Name=mRNA_H-canaliculatus_M_contigs7769.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=156bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7769:4843..4998- (Hapterophycus canaliculatus Oshoro7m male)
GTGCTCCGCCGTGGATTCGTTGCTGCTTCCCTTTCGCTGTGCACGTGCAG
GTTTGAGTTGACCCGGCTCCACCGAGTGTCCGTCGGTCCTATTGTCCTCG
GAGATCTCGAGGAGGGCTGCTGCCGGGAGCTAAGCAGGCGGGAAGTCGAG
GCACTC
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