mRNA_H-canaliculatus_M_contigs77680.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77680.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77680.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77680.1.1 vs.
Match: Acetyltransf_6 (domain-containing protein n=2 Tax=Candidatus Brocadiales TaxID=1127829 RepID=A0A0B0EL30_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 5.430e-7
Identity = 36/102 (35.29%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:  205 PLPETIEAFEKSLSKNARKQRKRRRNKLYDSGESVKFIPCQTYSDIDSAYVNLLRLHNLRHVNSGGSDSFQTDRYREFHLAAMKQALDNKELRLMSLVIDGK 510
            PLP+ IE F  SLS+N R   KRRR  L+   ++++F+  +   +IDSA   L  LH  R +      +F     R FH    +  L +  LRL  L + GK
Sbjct:  164 PLPDQIEDFYLSLSRNMRNTIKRRRRNLFRKYDNIEFLAWENPDEIDSAMERLFELHEKRWMIVKHKGNFMKSNVRGFHKKIARTFLKSDMLRLYFLRVQGK 265
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BLAST of mRNA_H-canaliculatus_M_contigs77680.1.1 vs.
Match: GNAT (family N-acetyltransferase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536T1U2_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 3.520e-6
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:  208 LPETIEAFEKSLSKNARKQRKRRRNKLYDSGESVKFIPCQTYSDIDSAYVNLLRLHNLR-HVNSGGSDSFQTDRYREFHLAAMKQALDNKELRLMSLVIDGK 510
            LP+T   F +SLS + R + K  R K    G+ ++F   Q  + +D A   L  LH  R H   GGSDSF T +Y +FH + MK  L    LRL  L +D +
Sbjct:  183 LPQTWPQFLQSLSSDRRSRLKSARKKALAGGK-LRFFVWQDAARLDRAVDRLAELHQRRWHEAGGGSDSFATPQYIDFHRSIMKATLPRGWLRLYCLELDDE 283
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BLAST of mRNA_H-canaliculatus_M_contigs77680.1.1 vs.
Match: GNAT (family N-acetyltransferase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A0U6_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 8.880e-6
Identity = 48/170 (28.24%), Postives = 74/170 (43.53%), Query Frame = 1 
Query:    1 DLGLLHGDDFEDIVTDMVCDSVFNVSECTRFQLTDMAENSELVKKLLSTNQEKQWGRPLERQQNRRVNPLPETIEAFEKSLSKNARKQRKRRRNKLYDSGESVKFIPCQTYSDIDSAYVNLLRLHNLRHVNSGGSDSFQTDRYREFHLAAMKQALDNKELRLMSLVIDGK 510
            DLG +     ED+V   +  +   +S      L+D+   S     L     E +  R  E  +      LP +   F +S+S + R + K  R K   +   ++F     ++ +D A   L  LH  R   +GGS+SF T  Y EFH  ++K A     LRL  L +DG+
Sbjct:  124 DLGPVLAPGCEDVVARKLARAALRLSGADVLVLSDIDPQSVFAGALEQAAHEARRARLSEVSERIAYVDLPRSWPEFLQSMSSDRRTRLKSARKKAA-AAHRLRFFVWDDFAGLDRAVDRLTELHRSRWREAGGSESFATPEYVEFHRRSIKSAFPRGWLRLYCLELDGE 292
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BLAST of mRNA_H-canaliculatus_M_contigs77680.1.1 vs.
Match: Acetyltransf_6 (domain-containing protein (Fragment) n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497LZ48_9ARCH)

HSP 1 Score: 54.7 bits (130), Expect = 9.340e-6
Identity = 47/160 (29.38%), Postives = 75/160 (46.88%), Query Frame = 1 
Query:   49 MVCDSVFNVSECTRFQLTDMAENSELVKKLLSTNQEKQWGRPLERQQNRRVNPL------PETIEAFEKSLSKNARKQRKRRRNKLYDSGESVKFIPCQTYSDIDSAYVNLLRLHNLRHVNSGGSDSFQTDRYREFHLAAMKQALDNKELRLMSLVIDGK 510
            ++ D++   S+ +   L D+ E S   + L S + E +     E + N RV  L      P +IE ++K LSKN R+  ++R  KL      VKFI    ++ +  A     +LH  R    G S +F ++ +R FHL   K   +   L L  LV+D +
Sbjct:   15 LLLDALMEFSDWSMLDLRDIREKSVTAEALNSISSENE-----ELRLNMRVKTLCPYIRLPASIEIYKKRLSKNMRRNLRKRMKKL-SRMYKVKFISQSEFNSVSEAMEIFFKLHQKRWKAKGKSGAFSSENFRRFHLELAKIFDEKGWLGLHFLVLDDE 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77680.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Acetyltransf_65.430e-735.29domain-containing protein n=2 Tax=Candidatus Broca... [more]
GNAT3.520e-638.24family N-acetyltransferase n=1 Tax=Betaproteobacte... [more]
GNAT8.880e-628.24family N-acetyltransferase n=1 Tax=Betaproteobacte... [more]
Acetyltransf_69.340e-629.38domain-containing protein (Fragment) n=1 Tax=Candi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77680contigH-canaliculatus_M_contigs77680:1..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog237368.SCABRO_02898
PFAMsAcetyltransf_6
Model size510
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.9e-08
EggNOG OGsCOG5653@1|root,COG5653@2|Bacteria
DescriptionProtein involved in cellulose biosynthesis
Cds size510
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.9953113-CDS-H-canaliculatus_M_contigs77680:0..5101696854113.9953113-CDS-H-canaliculatus_M_contigs77680:0..510Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77680 1..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77680.1.1prot_H-canaliculatus_M_contigs77680.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77680 1..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77680.1.1

>prot_H-canaliculatus_M_contigs77680.1.1 ID=prot_H-canaliculatus_M_contigs77680.1.1|Name=mRNA_H-canaliculatus_M_contigs77680.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp
DLGLLHGDDFEDIVTDMVCDSVFNVSECTRFQLTDMAENSELVKKLLSTN
QEKQWGRPLERQQNRRVNPLPETIEAFEKSLSKNARKQRKRRRNKLYDSG
ESVKFIPCQTYSDIDSAYVNLLRLHNLRHVNSGGSDSFQTDRYREFHLAA
MKQALDNKELRLMSLVIDGK
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mRNA from alignment at H-canaliculatus_M_contigs77680:1..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77680.1.1 ID=mRNA_H-canaliculatus_M_contigs77680.1.1|Name=mRNA_H-canaliculatus_M_contigs77680.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77680:1..510- (Hapterophycus canaliculatus Oshoro7m male)
GATCTGGGTTTATTGCATGGCGATGACTTCGAGGACATCGTTACCGACAT
GGTCTGTGACTCAGTATTTAATGTTAGTGAATGCACACGTTTTCAGCTTA
CGGACATGGCTGAAAATTCTGAACTTGTCAAAAAACTGCTCTCTACCAAT
CAGGAAAAACAATGGGGACGTCCTCTCGAGCGCCAACAGAATCGGCGCGT
AAACCCCCTGCCCGAAACGATTGAAGCCTTCGAAAAAAGTCTGAGCAAAA
ATGCCAGAAAACAAAGAAAACGTCGCCGCAATAAATTATACGACTCCGGA
GAAAGCGTTAAGTTCATACCCTGCCAGACATATTCTGATATCGATTCCGC
CTATGTCAACTTGTTACGCCTTCACAATTTGCGTCACGTAAACAGCGGTG
GATCAGATAGCTTTCAAACTGACAGGTATCGTGAATTTCATCTGGCTGCA
ATGAAGCAGGCTTTGGATAACAAGGAACTTCGGCTGATGAGTCTTGTTAT
TGATGGCAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77680:1..510-

>mRNA_H-canaliculatus_M_contigs77680.1.1 ID=mRNA_H-canaliculatus_M_contigs77680.1.1|Name=mRNA_H-canaliculatus_M_contigs77680.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77680:1..510- (Hapterophycus canaliculatus Oshoro7m male)
GATCTGGGTTTATTGCATGGCGATGACTTCGAGGACATCGTTACCGACAT
GGTCTGTGACTCAGTATTTAATGTTAGTGAATGCACACGTTTTCAGCTTA
CGGACATGGCTGAAAATTCTGAACTTGTCAAAAAACTGCTCTCTACCAAT
CAGGAAAAACAATGGGGACGTCCTCTCGAGCGCCAACAGAATCGGCGCGT
AAACCCCCTGCCCGAAACGATTGAAGCCTTCGAAAAAAGTCTGAGCAAAA
ATGCCAGAAAACAAAGAAAACGTCGCCGCAATAAATTATACGACTCCGGA
GAAAGCGTTAAGTTCATACCCTGCCAGACATATTCTGATATCGATTCCGC
CTATGTCAACTTGTTACGCCTTCACAATTTGCGTCACGTAAACAGCGGTG
GATCAGATAGCTTTCAAACTGACAGGTATCGTGAATTTCATCTGGCTGCA
ATGAAGCAGGCTTTGGATAACAAGGAACTTCGGCTGATGAGTCTTGTTAT
TGATGGCAAA
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