mRNA_H-canaliculatus_M_contigs7767.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7767.1.2
Unique NamemRNA_H-canaliculatus_M_contigs7767.1.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: Superkiller (viralicidic activity 2-like 2 (ATP-dependent helicase SKIV2L2) conserved hypothetical pr n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYM5_ECTSI)

HSP 1 Score: 741 bits (1913), Expect = 1.100e-258
Identity = 382/458 (83.41%), Postives = 412/458 (89.96%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDGEKALLAAGLKDEERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKPASKAGDPAKFEVAVLVMCKPEDGKR--GKEYLPPAPMKDGEMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRRLQDPSLEKLLARETQLQLRLDGLPFHDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMVHQ 1368
            EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSF+QFQQEASAPALE+EAS+LD EK +LAAGL DEERTSEYFLV QQLERTR +V RVIQRPENCLPYIQ GRL+RMRGWP  HGDQ  KP     +G + +L   ++     DWGWGA VDL +K +SKAGDPAK+EV VLV CKPE+  R  G+   PP PM+DGEMRV+HFTL S+ +LSS+RL+MP DLRAAE RAAVAE+MKEA RR+QD SLEKLLARETQLQLRL+GLPFH D+DREEQLQR+TA+QHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTEL+PEQSAA+LSCMVHQ
Sbjct:  453 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFNQFQQEASAPALEEEASDLDSEKKVLAAGLNDEERTSEYFLVRQQLERTRAEVCRVIQRPENCLPYIQAGRLVRMRGWPARHGDQDKKPDGREANGHQAELSFDNQP----DWGWGATVDLNKKASSKAGDPAKYEVGVLVKCKPEESARRGGQHIYPPTPMEDGEMRVVHFTLDSIADLSSIRLMMPNDLRAAEARAAVAENMKEAFRRIQDSSLEKLLARETQLQLRLEGLPFHSDKDREEQLQRYTAVQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELSPEQSAALLSCMVHQ 906          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: rRNA_proc-arch (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K931_9PHAE)

HSP 1 Score: 527 bits (1357), Expect = 2.510e-181
Identity = 281/372 (75.54%), Postives = 311/372 (83.60%), Query Frame = 1
Query:  112 RWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALE-DEASNLDGEKALLAAGLKDEERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKPASKAGDPAKFEVAVLVMCKPEDGKR--GKEYLPPAPMKDGEMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRRL---------------QDPSLEKLLARETQLQLRLDGLPFHDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDE 1173
            RWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSF+QFQQEA+APALE ++AS+LD EK +LAAGL DEERTSEYFLV QQLERTR +V RVIQRPENCLPYIQ GRL+R+RGWP  HGDQ NKP     +G + +L   ++     DWGWGA VDL +K +SKAGDPAK+EV VLV CKPE+  R  G+   PP PM+DGEMRV+HFTL S+ ELSS+RL+MP DLRAAE RAAVAE+MKEA RRL               QD SLEKLLARETQLQ RL+GLPFH+D+DREEQLQR+TA+QHLADKAKLLRKEAKGVQHMVMKDE
Sbjct:  157 RWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFNQFQQEATAPALEVEKASDLDSEKNVLAAGLNDEERTSEYFLVRQQLERTRAEVCRVIQRPENCLPYIQAGRLVRIRGWPARHGDQDNKPDGRAANGHQVELLPDNQP----DWGWGATVDLNKKASSKAGDPAKYEVGVLVKCKPEESARRGGQHIYPPTPMEDGEMRVVHFTLDSIAELSSIRLMMPNDLRAAEARAAVAENMKEAFRRLEGKVPKLEPIADMRIQDSSLEKLLARETQLQRRLEGLPFHNDKDREEQLQRYTAVQHLADKAKLLRKEAKGVQHMVMKDE 524          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: rRNA-processing (arch domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7I9_9STRA)

HSP 1 Score: 421 bits (1081), Expect = 1.910e-133
Identity = 257/528 (48.67%), Postives = 321/528 (60.80%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDGE-KALLAAGLKDEERTS-------EYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQR-------------KP--------ASKAGDPAKFEVAVLVMCKPEDGKRGKEYLPPAPMKDG------EMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKE--------------AVRRLQ--------------DP---------SLEKLLARETQLQLRLDGLPFHDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMVHQ 1368
            EGLIK LFATETFSIGLNMPARTVVFT+TRKFDG DFRW+TSGEYIQMSGRAGRRGKD  G VIQMLDEKMDP VAK MLYG+AD L+SSYHI+YNMLLNMLRVE ADP+F+V+SSFHQFQQE   PALE+EA  L  +  A+   G  D  R +       +Y   L QLE+ + ++   IQRPE C+ ++Q GRL+ MR  P       + P A  V                 DWGWG ++++Q+             KP        A+ A    +    + V+ + E    G    PP P+K G      EM V+ F L S+ +LSS+R+ +P D+RAA  R+AV +S+ E              A+R+ +              DP         + EKL+ R   L+ RL+ LP H   D++E+   +     L  +AKLL+ EAK   H+VM D++RR KRVLRRLGHCD+ G+IQLKGRVACEIN CDELVVTELIF+G F ELT EQ+AAVLSC+VHQ
Sbjct:  455 EGLIKCLFATETFSIGLNMPARTVVFTSTRKFDGADFRWVTSGEYIQMSGRAGRRGKDVDGKVIQMLDEKMDPDVAKAMLYGDADPLHSSYHINYNMLLNMLRVEGADPEFIVRSSFHQFQQEQGVPALEEEAELLTAKANAIEIKGEDDVVRQAALLTCFLKYHTTLTQLEKVQEEILTTIQRPEYCMAFLQVGRLVYMREPPT---PSASNPSALEV----------------RDWGWGVVINVQKVQRAVARAPQDKTKPQSFQDRAAAATAASATESVYTLEVLVRAEAAGGGAAGGPPRPVKPGSSGKVGEMTVVPFELASLAKLSSIRVHLPSDIRAAASRSAVGKSLAESSTTSSLIAAAIKGAIRKSRAEIGRRHPNGLPELDPIDDIGIKGSAFEKLVGRGDDLEERLEELPLHKAPDKQERYALYKEKADLLARAKLLKAEAKSATHVVMHDQLRRMKRVLRRLGHCDAAGIIQLKGRVACEINACDELVVTELIFNGTFNELTMEQTAAVLSCLVHQ 963          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9N8_9STRA)

HSP 1 Score: 387 bits (994), Expect = 1.490e-120
Identity = 235/501 (46.91%), Postives = 303/501 (60.48%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDGEKALLAAGLKDEERTS-EYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKPASK-AGDPAKFEV------AVLVMCKPEDGKRGKEYLPPA------------------PMKDGE----MRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRRLQ------DP---------SLEKLLARETQLQLRLDG--LPFHDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMV 1362
            EGLIK LFATETFSIG+NMPARTVVFTNTRK+DG DFRW+TSGEYIQMSGRAGRRGKDDRGIV+QM+DEKM+P + KG+LYGEAD LNSSY I YNMLLNMLRVED DP++L+K+SFHQ+QQEA+APAL  +A +++ E   +  G ++EE  + EY  + +QL  TR  V + I++PE   P++Q GRL++                          +  G   +G L +GWG IV  + +P  + AG+  K  V       VL +  P    R  +  PPA                  P  D E    M++   +L S+  LS+VRL +P D + AE R +V +S+KE +RR        DP           EKLL RE  L  RL G  L   D+ +   Q+  +     L + AKL+R+EA+  Q MVM++E+RR +RVLR +GH D  GV+  KGR ACEINT DELVVTEL F G  +ELT EQ  A+LSC +
Sbjct:  505 EGLIKCLFATETFSIGINMPARTVVFTNTRKWDGTDFRWVTSGEYIQMSGRAGRRGKDDRGIVVQMMDEKMEPAICKGILYGEADPLNSSYRIGYNMLLNMLRVEDVDPEYLIKASFHQYQQEAAAPALITKAEDMEKEALAVNVGSEEEENAAREYHAMEKQLGATRKSVAKTIRKPEYSRPFLQPGRLVK--------------------------IDLGDFATGRLHFGWGVIVSARTRPGGQTAGEAGKAAVENANMETVLDVLLPTRSHRDPDTDPPAKIDLLEWRGDVETCQPFRPDVDAEKYRVMKIFAVSLESLQALSAVRLFLPQDAKLAEHRRSVGKSLKEVLRRFAKEVPTLDPIRDMGVEVEDFEKLLQRERTLVDRLAGHALAQLDEPELRSQVDAYARKAELLEGAKLVRREARKAQSMVMREELRRMRRVLREMGHVDEVGVVLTKGRTACEINTADELVVTELFFDGTLSELTAEQCVALLSCAI 979          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: Helicase ((Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5Z9_THAPS)

HSP 1 Score: 363 bits (931), Expect = 9.920e-113
Identity = 221/487 (45.38%), Postives = 300/487 (61.60%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALE---DEASNLDGEKALLAAGLKDE-ERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQTG-RLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKP----ASKAGDPAK------FEVAVLVMCKPEDGKRGKEYLPPAPMKDGEMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRRLQD--PSLE-------------KLLARETQLQLRLDGLPFHDDQDREEQLQRFTAMQH---LADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMV 1362
            EGLIK LFATETF+IG+NMPA+TVVFTNTRKFDG++ RW+TSGEYIQMSGRAGRRGKDDRG+VIQM+DEKM+P V KG+LYG+ D LNSSY ISYNMLLNM+RVED DP++L+++SFHQ+QQE+ APALE   DEA +      ++  G  D+     EY+ + +QL  T+  + ++ +RPE+ LP++Q+G RL+ +                  +DG+               +GWG IV  +RK     A  AG  A         + VL+ C     +  +      P     MR     L ++  +S+VRL +P D +  E R  ++ S+KE  RR  D  P L+             KLL R ++L+ RL       D D EE+++R +A +    L D+++ LR+EA+  Q MVMKD++R+ KRVL+ LGH D  GVIQ KGR ACEINT +ELVV EL+F+G F +LT EQ  A+LSC++
Sbjct:  359 EGLIKALFATETFAIGINMPAKTVVFTNTRKFDGKEIRWVTSGEYIQMSGRAGRRGKDDRGVVIQMMDEKMEPTVCKGILYGDPDPLNSSYKISYNMLLNMMRVEDVDPEYLLRASFHQYQQESEAPALEIKADEAEDEANAIEIVPGGSTDDLTAVGEYYGMDKQLLLTQRKMMKIQRRPEHILPFVQSGGRLIDVS-----------------IDGES--------------YGWGVIVRYKRKAGTGTAGSAGQTALNAEGPLHSIDVLLPCVDRTARHCRPESTKDPPNIVSMREFTVGLDTIDRISAVRLFVPQDTKPQEARKNISNSLKEVQRRFPDGLPLLDPVKDLKINVSEFNKLLERASELKNRLATHKLSTDIDEEERIKRVSAYEQKNDLMDQSRALRREARACQTMVMKDDLRKMKRVLKELGHVDGQGVIQTKGRTACEINTANELVVVELMFAGLFNDLTVEQCVALLSCLI 814          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8X5_THAOC)

HSP 1 Score: 358 bits (918), Expect = 7.860e-111
Identity = 227/515 (44.08%), Postives = 306/515 (59.42%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDGE----KALLAAGLKDEERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQT-GRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKPAS------------KAGDPAKFEVAVLVMC---------------KPED-------GKRGKEYLPPAPMKDG----EMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRR------LQDP---------SLEKLLARETQLQLRLDGLPFHDDQDREEQLQRFTAM---QHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMV 1362
            EGLIK LFATETF+IG+NMPA+TVVFTNTRK+DG++ RW+TSGEYIQMSGRAGRRGKDDRG+VIQM+DEKM+P V KG+LYG+ D LNSSY ISYNMLLNMLRVED DP++L+++SFHQ+QQE+ APALE +A   D E    + +     +D     EYF + +QL  T+  + +V +RPE+ LP++Q+ GRL+ +                  +DG+               +GWG IV  ++K  +             AG      + VL+ C               + ED        +   ++  PA   DG     MR     L S+  +S+VRL +P D +  E R  + +S+KE  RR      L DP           +KLL R ++L+ RL       + D  E+++R +A    Q   DKA+LLR+EA+  Q MVMKDE+RR KRVL+ LGH D+ GVIQ KGR ACEINT +ELVV EL+F+G F +L+ EQ+ A+LSC++
Sbjct:  333 EGLIKALFATETFAIGINMPAKTVVFTNTRKWDGKEIRWVTSGEYIQMSGRAGRRGKDDRGVVIQMMDEKMEPAVCKGILYGDPDPLNSSYRISYNMLLNMLRVEDVDPEYLLRASFHQYQQESEAPALEAQADQHDAEAKSIEVVPGGTEEDVALVGEYFGMDRQLLLTQRKMIKVQRRPEHILPFVQSSGRLIDVT-----------------IDGEN--------------YGWGVIVRYRKKAGTGTAGSAGQAAVDAAGGAGVHAIDVLLSCVDRHFDDTSQAAEARREEDLANLGLLWRGTSQHCRPAGAADGPEVVSMREFTVGLDSIDRISAVRLFVPQDAKPPEARRNIMKSLKEVKRRFPDGLPLLDPVKDLKINVGEFDKLLQRASELKERLASHRLATEVDEAERVRRVSAYERRQDETDKARLLRREARACQTMVMKDELRRMKRVLKELGHVDAAGVIQTKGRTACEINTANELVVVELVFAGLFNDLSVEQAVALLSCLI 816          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: exosome (RNA helicase MTR4 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140239ED)

HSP 1 Score: 358 bits (918), Expect = 4.710e-110
Identity = 201/477 (42.14%), Postives = 293/477 (61.43%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDGEKALLAAGLKDEERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKPASK----AGDPAKFEVAVLVMCKPEDGK--RGKEYLPPAPMKDGEMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRR---------------LQDPSLEKLLARETQLQLRLDGLPFHDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMVHQ 1368
            EGLIK LFATETF++G+NMPARTV+FTN RKFDG+DFRWI+SGEYIQMSGRAGRRG DDRGIVI M+DEK++P + K +L G  D LNS++H++YNM+LN+LRVE+ +P+++++ SF QFQQ  + P +  +   L  E+      + +EE    Y+ + QQL R   DV   ++RP+ C+P++Q GR+++++                               + E D+GWG +V+  +K  +K    A   A + V  L+ C  E  +    +   PP P   GEM+V+  TLG +  LSSVRL +P DLR+ + R +V +S++E  +R               ++DP L+KL+ +    + R+   P H D   EE  +R      LA + K  R+E K  + ++  DE++ RKRVLRRLG+C    VI++KGRVACEI++ DEL++TE++F+G F +LTP+Q AA+LSC V Q
Sbjct:  469 EGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKLNPAIGKSLLKGLPDPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFCQFQQYKALPDMITKLKTL--EQMYNGTQVPEEESVCAYYKIRQQLARLARDVEEFVRRPKYCIPFLQPGRMVKVK-------------------------------NEEDDFGWGVVVNFHKKTNTKIIASAEQEALYVVEALLCCSRESARLPHTEASKPPRPGDKGEMQVVPITLGLITALSSVRLYLPKDLRSHDNRQSVIKSIEEVHKRFPDGVPLLDPVDDMGIKDPGLKKLVQKVEAFERRMFSHPLHSDPALEELCRRCQDKMQLAVEVKGARRELKRARTVLQADELKNRKRVLRRLGYCSPSDVIEVKGRVACEISSADELLLTEMLFNGVFNDLTPQQCAALLSCFVFQ 912          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: Antiviral (helicase n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1VND3_9FUNG)

HSP 1 Score: 357 bits (916), Expect = 2.030e-109
Identity = 207/476 (43.49%), Postives = 307/476 (64.50%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDGEKALLAAGLKDEERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRK--PASKAGD--PAKFEVAVLVMCKPEDGKRGKEYLPPAPMKDGEMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRR------LQDPSLEKLLARETQ----------LQLRLDGLPFHDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMVHQ 1368
            EGLIK+LFATETFSIGLNMPA+TV+FT+ RKFDG++ RW++ GEYIQMSGRAGRRG DDRGIVI MLDEKM+P VAKGML G AD LNS++H+SYNM+LN+LRVE   P+F+++  F+QFQ  A  P L D+ S L+ EK   A  +++E   +EY+ + +QL + + D R ++  P+  LPY+QTGRL+R+R                 +D +  D+ +  ++    D+GWG I+ +Q++     + G+  P K+ + VL+ C P   K  K   P      GEM VL   L ++  +S++R  +P +L++++ R  V ++++E  +R      L DP +E +  +ET+          L+ RLD     ++++ EE   ++ +   + DK K+++KE +  Q ++  DE++ RKR+LRRLG+  S  +I+LKGRVACEI+T DEL++TE+IF+G F ELT EQ+ A+LSC V Q
Sbjct:  501 EGLIKVLFATETFSIGLNMPAKTVLFTSVRKFDGKENRWVSGGEYIQMSGRAGRRGLDDRGIVILMLDEKMEPAVAKGMLKGVADRLNSAFHLSYNMILNLLRVEGISPEFMLERCFYQFQNCAKIPELIDDLSKLEDEKN--AIKIENESEIAEYYEIRKQLNQYKRDKRTIMNNPQYILPYLQTGRLVRIR-----------------IDDKVKDVDAFKDDDTIQDYGWGVIISIQKRINQNKQMGEDAPPKYILDVLLYCAPGTEKNPKLAKPCPKRTKGEMVVLQCNLSTIDGVSTIRTKVPSNLKSSDARNQVYKTLQETKKRFKNKIPLLDP-VEHMNIKETEFINLLKKIEILENRLDKCEIKNEENLEEIYNKYHSKIKVDDKIKVVKKEIQHAQSVLQLDELKARKRILRRLGYTSSADIIELKGRVACEISTGDELILTEMIFNGLFNELTVEQTVALLSCFVFQ 956          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVU2_TRICV)

HSP 1 Score: 350 bits (897), Expect = 2.230e-109
Identity = 222/535 (41.50%), Postives = 308/535 (57.57%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLD--GEKALLAAGLKDEERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQT-GRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKPASKAG----------DPAKFEVAVLVMC--------------KPEDGK------RGK-EYLPPAPMKDG----EMRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRR------LQDPSLE---------KLLARETQLQLRLDGLPFHD-----------------------------DQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCM 1359
            EGLIK LFATETF+IG+NMPA+TVVFTNTRK+DG DFRW+TSGEYIQMSGRAGRRGKDDRGIVIQMLDE+M+P V KG+LYG+ D LNSSY I YNMLLNM+RVED DP++L+++SFHQ+QQE+ APALE  A  L+   ++ ++  G +DEE   EY+ + +QL+ TR  + RV++RPE+ LP++QT GRLL +                  +DG                +GWGA+V  +R+  +++G          D     + VL+ C              K ED        RG  ++  PA   D      MR+   TL  +  +S+VR+ +  DL   E RA V  ++KE  RR      L DP  +         KLL R   L+ RL      +                             ++ R++ ++ +     L D++++LR+E++  + +V++DE+R+ KRVLR LGH D+ GVI  KGR ACE+NT +EL+V EL+F+G F +L  EQ AA+LSC+
Sbjct:  138 EGLIKALFATETFAIGINMPAKTVVFTNTRKWDGTDFRWVTSGEYIQMSGRAGRRGKDDRGIVIQMLDERMEPAVCKGILYGDPDPLNSSYRIKYNMLLNMMRVEDVDPEYLLRASFHQYQQESEAPALEARAEELERRAKEIVVGDGAEDEEAVGEYYRMEKQLDLTRKGMARVVRRPEHMLPFVQTPGRLLDVT-----------------IDGDN--------------YGWGALVSYKRRTGTQSGGTAGKAARDSDAPLHTLDVLLPCVDRHFDSKGIDKGQKEEDASNQGLLWRGSSQHCRPARPSDDPKLVSMRIFTATLDDVERISAVRIFVKKDLHPPEARAHVGHAVKEVQRRFPGGVPLLDPVKDLKIKSEEFGKLLDRAAALKDRLASHKLSNVIATESEEGGEGKKDKEAKNEKQEEDALTEEKRDQMVRAYARKNDLLDQSRVLRRESRSRRAVVLRDELRKMKRVLRALGHVDASGVICTKGRAACEVNTANELLVVELLFTGLFNDLKVEQIAALLSCL 641          
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Match: ATP-dependent (RNA helicase DOB1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CQP2_NANGC)

HSP 1 Score: 356 bits (914), Expect = 2.660e-109
Identity = 218/497 (43.86%), Postives = 289/497 (58.15%), Query Frame = 1
Query:    1 EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSGRAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLNMLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDG--EKALLAAGLKDEERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHGDQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQR------KPASKAGDPAKFEVAVLV----------MCKPEDGKRGKEYLPPAPMKDGE----MRVLHFTLGSMVELSSVRLLMPPDLRAAERRAAVAESMKEAVRRL-------------------QDPSLEKLLARETQLQLRLDGLPFHDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLRRLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVLSCMVHQ 1368
            EGLIK LFATETFSIG+NMPA+TVVFT   KFDG+DFRW+T GEYIQMSGRAGRRGKDDRGIVI M+D KM+P V K +LYGE D L SSYH+SYNMLLNMLRV+  +P+FLV+SSFHQ+QQEA+APALE EA +++       +  G + E   +EY+    Q E  + ++R+  Q PE  L +++ GRL  +                         ++   E  G+ DWGWGA+V  +       K  ++ G  A    A LV          MC       GKE  PP P   GE     RV+   L  +  LS+V + MP +++++E R+ V   +KE  RRL                   Q  + + LL R   L+ +++     + +        +       DKAKLLR+EA+  Q +VMKD+++R KRVLRRLG  DS+ V+QLKGRVACE+NT DELVVTE+IF+G F +L PEQ  A++ CM  +
Sbjct:  464 EGLIKCLFATETFSIGINMPAKTVVFTQCTKFDGKDFRWVTPGEYIQMSGRAGRRGKDDRGIVIMMMDSKMEPDVCKAILYGEPDKLYSSYHVSYNMLLNMLRVQGVNPEFLVRSSFHQYQQEAAAPALEKEAESMEAVARGVKIEGGTEGEAAAAEYYACRSQWEEIKKEMRKYTQDPEIVLSFLKKGRLAYV-------------------------VEETPE--GKRDWGWGAVVGYKVVDGGKVKSKTQEGGGAAIGRAGLVKGDGWAHVVEMCLRVRKGSGKETTPPEPFSVGEGEFDTRVVGVLLPCLETLSAVCIHMPGEIKSSESRSQVGRGLKEVERRLGGENGPGIPFLDPIKDLKIQSDTFKTLLERAKVLEEKMERCRLREREGWRGVYAAYVEKTEAMDKAKLLRREARMHQALVMKDDVKRMKRVLRRLGFVDSENVLQLKGRVACEVNTVDELVVTEMIFNGVFNDLKPEQVVALIGCMCFE 933          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7767.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Superkiller1.100e-25883.41viralicidic activity 2-like 2 (ATP-dependent helic... [more]
rRNA_proc-arch2.510e-18175.54domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
rRNA-processing1.910e-13348.67arch domain-containing protein n=1 Tax=Tribonema m... [more]
Hypothetical1.490e-12046.91protein n=2 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Helicase9.920e-11345.38(Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=... [more]
Uncharacterized7.860e-11144.08protein (Fragment) n=1 Tax=Thalassiosira oceanica ... [more]
exosome4.710e-11042.14RNA helicase MTR4 n=1 Tax=Petromyzon marinus TaxID... [more]
Antiviral2.030e-10943.49helicase n=4 Tax=Neocallimastigaceae TaxID=29007 R... [more]
Hypothetical2.230e-10941.50protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
ATP-dependent2.660e-10943.86RNA helicase DOB1 n=3 Tax=Monodopsidaceae TaxID=42... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7767contigH-canaliculatus_M_contigs7767:36..4239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYM5
Preferred nameSKIV2L2
PFAMsDEAD,DSHCT,Helicase_C,rRNA_proc-arch
Model size1380
Max annot lvl2759|Eukaryota
KEGG koko:K12598
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000184,GO:0000288,GO:0000291,GO:0000460,GO:0000956,GO:0003002,GO:0003006,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009653,GO:0009791,GO:0009892,GO:0009893,GO:0009908,GO:0009987,GO:0010093,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019439,GO:0022414,GO:0022613,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034427,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046700,GO:0048367,GO:0048437,GO:0048444,GO:0048449,GO:0048518,GO:0048519,GO:0048523,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0055087,GO:0060147,GO:0060149,GO:0060255,GO:0060968,GO:0060969,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0070478,GO:0071704,GO:0071840,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0090701,GO:0099402,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1905392,GO:1905393
Exons9
Evalue1.8e-259
EggNOG OGsCOG4581@1|root,KOG0948@2759|Eukaryota
EC3.6.4.13
DescriptionRNA helicase activity
Cds size1380
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7767.1.2prot_H-canaliculatus_M_contigs7767.1.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7767 36..4239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.8104837-CDS-H-canaliculatus_M_contigs7767:35..1481696854113.8104837-CDS-H-canaliculatus_M_contigs7767:35..148Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 36..148 +
1696854113.827774-CDS-H-canaliculatus_M_contigs7767:380..4991696854113.827774-CDS-H-canaliculatus_M_contigs7767:380..499Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 381..499 +
1696854113.8381827-CDS-H-canaliculatus_M_contigs7767:787..9451696854113.8381827-CDS-H-canaliculatus_M_contigs7767:787..945Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 788..945 +
1696854113.8493397-CDS-H-canaliculatus_M_contigs7767:1076..12411696854113.8493397-CDS-H-canaliculatus_M_contigs7767:1076..1241Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 1077..1241 +
1696854113.8599138-CDS-H-canaliculatus_M_contigs7767:2046..23221696854113.8599138-CDS-H-canaliculatus_M_contigs7767:2046..2322Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 2047..2322 +
1696854113.869735-CDS-H-canaliculatus_M_contigs7767:2774..29171696854113.869735-CDS-H-canaliculatus_M_contigs7767:2774..2917Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 2775..2917 +
1696854113.879393-CDS-H-canaliculatus_M_contigs7767:3112..32231696854113.879393-CDS-H-canaliculatus_M_contigs7767:3112..3223Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 3113..3223 +
1696854113.8965669-CDS-H-canaliculatus_M_contigs7767:3335..34231696854113.8965669-CDS-H-canaliculatus_M_contigs7767:3335..3423Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 3336..3423 +
1696854113.9074616-CDS-H-canaliculatus_M_contigs7767:4032..42391696854113.9074616-CDS-H-canaliculatus_M_contigs7767:4032..4239Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7767 4033..4239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7767.1.2

>prot_H-canaliculatus_M_contigs7767.1.2 ID=prot_H-canaliculatus_M_contigs7767.1.2|Name=mRNA_H-canaliculatus_M_contigs7767.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=460bp
EGLIKILFATETFSIGLNMPARTVVFTNTRKFDGQDFRWITSGEYIQMSG
RAGRRGKDDRGIVIQMLDEKMDPQVAKGMLYGEADALNSSYHISYNMLLN
MLRVEDADPDFLVKSSFHQFQQEASAPALEDEASNLDGEKALLAAGLKDE
ERTSEYFLVLQQLERTRGDVRRVIQRPENCLPYIQTGRLLRMRGWPVGHG
DQGNKPQASGVDGQKGDLQSGHENSGELDWGWGAIVDLQRKPASKAGDPA
KFEVAVLVMCKPEDGKRGKEYLPPAPMKDGEMRVLHFTLGSMVELSSVRL
LMPPDLRAAERRAAVAESMKEAVRRLQDPSLEKLLARETQLQLRLDGLPF
HDDQDREEQLQRFTAMQHLADKAKLLRKEAKGVQHMVMKDEMRRRKRVLR
RLGHCDSDGVIQLKGRVACEINTCDELVVTELIFSGAFTELTPEQSAAVL
SCMVHQVSL*
back to top

mRNA from alignment at H-canaliculatus_M_contigs7767:36..4239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7767.1.2 ID=mRNA_H-canaliculatus_M_contigs7767.1.2|Name=mRNA_H-canaliculatus_M_contigs7767.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7767:36..4239+ (Hapterophycus canaliculatus Oshoro7m male)
GAGGGTCTCATCAAGATTCTATTCGCGACGGAGACTTTCTCCATTGGTCT CAACATGCCGGCGAGGACGGTGGTGTTCACTAACACCCGTAAATTTGACG GACAGGATTTCAGGTGAGACCGTGTCGCCTGCACCCTTTCACTTTCATTT GCTCGTGCAACATGTCATGGCATGTGTCTTCGCTTGCATGCCATCCGAAG TTCACTACGGCACACTTTCTATACATACGCAATCTAGACAGCAATGTCAC GTACACAGGGTCGGCATGGACAAGCCGGACCGGACCAGCAATTATGTCTG CAATTTAATCTAGAAGCTCACGCTGTTTTTCTTCTTACTTCCAAGGTGGA TAACGTCGGGAGAGTATATCCAGATGAGCGGGCGCGCGGGAAGGCGAGGC AAGGACGACCGAGGCATCGTTATCCAAATGCTTGACGAGAAGATGGATCC TCAAGTAGCGAAGGGTAAGCTAATGCCACACAAGCAAATGCTCCGCTGAC AGGTCTCTGACAAGAACAAATACTAGCAACCTGTCGGCCTCCCGACGAGC TCAAGCACGGGAAGGGGACCTTGCGACGCTGAAGCTCCGTCGTGGAAATA ATCATGTCGGCGAGTCCTCGACGTTTGGAATTCAGCGTCTTAAATGTTAT TGCTTGGCGCGTTTGGTACTTTGAAATATTGCTTTGCGAATTCCAATATT CATCGAACAAATAAATCAAACAGCGTCGTAACTACCGACCCCGCATTCAC AGGAATGCTGTACGGAGAGGCAGATGCCTTGAACAGCTCCTACCACATCA GCTACAACATGCTTTTGAACATGCTGAGAGTGGAAGACGCTGATCCGGAT TTCTTGGTTAAGAGCTCGTTTCACCAGTTCCAACAGGAGGCATCTGCGCC AGCTCTGGAGGTGGGTCCGCTGTCCCCACCCCGATTGCGATGCAGGCCCT ATTTTCAGCTGGTGGCAAAAGCAGCGATGTGATATGCCTGAAGATGCGAT ACTATCATGTCGCTGACGAGCTTGAATGCTACTCGTTGCAGGACGAGGCA AGCAACCTAGATGGCGAAAAGGCTTTGCTTGCAGCCGGGTTGAAGGACGA AGAACGAACCTCGGAATACTTTCTTGTACTTCAGCAGCTCGAACGAACAC GGGGGGATGTGCGCCGCGTAATACAGCGTCCTGAGAACTGCCTCCCTTAC ATCCAGGTGAGGGCAGTCTCCTCGTGACTCTCTTGATCCAACGAAGCAGA TTCTCAATGATCATTCTGACTGTACATGTACTATAGCAGACAGACGGAGC AGAAATACCCGCAAGGCATTGCTTCGGCATGCAATAAATGCGGAATGAGT TCCGACTTGTGACTTTCGGAGCTCCTTTGAGACATTATTGAACGTCACGC GTGCATGTGCCCCCTTCACCCCTTCGATGTGTTCTTGTTGTCAATTGAAA CAACATTCACGTGGAGCTAGCAGAAGACTCGTGACCGAACACGTTCGTAG CGCTGTGAGGTTTTCATCGGCAAAATTTTCGGGACCTGCTGTCGCAGACT AGGCTCAACTCTGCATCCGCACCATTGGGAACGCCTCTATATCCTGATTG GCCTCGTGTAATTCGCGCAACGGAATTTCATTGGCGCTCGCTCGTGAAAT AAACCTGTCAACAATTTGCAGTGGTTCCAGAAAACTTGCTTCGCTACAGC GGCACCCAGTACCCATCGATCTCCATGAAGACGAAGTGCTTAAAGGAGAC AGTCTGCCTTTAAACTTGGATGGCGATCCCGCCATCATTTAGGCCACGAA TTGCATTTACAACTGGTTGCTAAGGGAGCTACCAAATGATCCCTGTGAAC TCTTTTTGTCGGCCCCGCCCCTGCTGCTGAGCCATTCTGTCGTCAGCTGG TGTTCCAACTTGGGTTCAACGCCGCTTAACACTGCTGTCATGTCATGTCC TGTCATTTCACTCATACTCTGTGTGTGCATGTGCTCTTTCGATAACGCTG TCCTAATTTAGACGGGGCGTTTGCTTCGCATGAGGGGTTGGCCAGTCGGG CATGGAGACCAAGGTAACAAACCCCAGGCAAGCGGGGTTGACGGGCAAAA GGGAGATCTTCAAAGCGGCCATGAAAATAGTGGCGAGCTAGACTGGGGAT GGGGAGCGATTGTAGATCTACAGAGAAAGCCTGCGAGCAAAGCTGGCGAT CCCGCCAAGTTCGAGGTTGCTGTGCTGGTGATGTGCAAGCCGGAGGACGG CAAACGTGGAAAAGAATATCTCCCTCCCGCGCCGATGGTGAGTAAGTAGC GAGCACATTGGAACAGCGACTCAGCGTTTTGTACGTTGTGCGCGTAGGCA GAAAATATTATTACTTGTACAAGACGTCTTACTGGGAATGTGGACTGGGA ATGTGGACTTTGTTTTCTGAATCATCCATGCAGCGGAAAATTGATCGAAG GGATGCTCTTGTCTTTGAAGTAAACAGTGCGACAATGACGCGTGGTATGA TAACTATGCTTTCTGTCACCAAACAGCAAGCACTTCTTGCGCATCGCCGC CGGCCTCACATTTTTGTCTGAAACCACGCTGGTTTCTGATCATCTCTTGA AGTTAAGGAACATGGAACTCGACTTCTTTGTGAAAACATCCGTTTTCTCA AGTGATGAGCGGGTGCTGTGGCGCGCTGTGCTCTTCGATTTGATTCTGGC AGCCGTTTTGCTGCTCGTTTGTTTCGCCAAAAATTACAGAAGGACGGCGA AATGCGAGTCTTGCACTTCACGCTTGGATCTATGGTAGAACTGAGCTCCG TTCGGCTATTGATGCCGCCAGACCTGCGAGCGGCGGAGAGGCGGGCGGCA GTGGCGGAGAGCATGAAAGAAGCGGTTCGCAGGTATCAACGCCATGCGTC GTAATCCATCGGTGTCTTCCCTGCACGAGGCAAAACTCCCTTCGTGAAGC AGCCACATTCGCCGGAAACGTCATCGTGATCGTCATCGTGATTGTCTGGC CATAACAGTACGAAACTCGTGCATGAAAACAGGCTCAAAGGCAAGGTGCC GACACTCCATCCGATTGCTGACATGAGATTACAAGACCCCTCCTTGGAGA AGCTTCTAGCAAGAGAGACACAGCTGCAGCTTCGTCTAGACGGTCTGCCG TTTCACGATGACCAAGACCGAGAGGAGCAACTACAAAGGTAACTAACCCA TGCGTGTCAAAAAGCAGCACAGTGGCCGATGCTCTCGTCGCGTTCCACGT GTGCACCCGTGCAGTAAATAACAAGTGACCTAGTCCGCGTTTATTTTCAG GTTTACGGCGATGCAACACCTAGCTGACAAGGCTAAACTTCTCCGGAAGG AGGCGAAAGGTGTCCAACACATGGTGATGAAAGACGAGGTACGCATGCGG AGTCTGGAGTTCAGAGAAAGACCGTGCGTGATTGGCAAACGCGCTCTTGC TTTGAAAATAACTTTGCCCGCGGTTATGGAGACATGGCCGTGGTTCTACA GGAGTATAAAATGTAGCAGCTCCCCCTCGGACCGCTTGGTCACAACAGGA TCTACAGCCTTCCTGTCTGCTCGCCTATGTCCTATCGTTGTATCTTAATC CTGTTCAAGGCATGAGTGGTACGACGTCGCCCTTTATTCCGCGTAATGCA TGCAGGGCTCAGTCTGGCTCTACGAAGTAGTGGTAGCGAGTCAGCTTGCG GTAGCTTCCGCTAGCTCAGGTCGCTTGGTGAACGCGGTCTCATCCCGAGT ATGGCGTGATAAAAGAGCACGTGGGCGCTCGCATGCCTCAGACCCACGTC TTACTGTTGTGTGCGGAGTATTGCGCAAACTCATGACGGCGTGCTATTGC GAGAGTTCACGAAGGATCGCAGCCGCAAGGGGTCACAGGTAGCTTGAGTA AGTGACTCAAGCACAGAGGGCGACACACATTACCTCGTCTTCGTAGACTC CCGAGGTTGTGAATTCCATCCGATGAATGTGGCTGTGATCTGCATAGATG CGCCGGAGGAAGCGTGTATTGCGGAGGCTCGGCCACTGCGACTCCGATGG GGTCATCCAACTGAAAGGGCGCGTCGCCTGCGAGATCAACACCTGCGATG AGCTCGTAGTAACAGAGCTCATTTTCAGTGGGGCATTCACAGAGCTCACT CCCGAACAAAGCGCTGCCGTCCTGAGCTGCATGGTTCACCAGGTGAGCTT GTAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7767:36..4239+

>mRNA_H-canaliculatus_M_contigs7767.1.2 ID=mRNA_H-canaliculatus_M_contigs7767.1.2|Name=mRNA_H-canaliculatus_M_contigs7767.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1380bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7767:36..4239+ (Hapterophycus canaliculatus Oshoro7m male)
GAGGGTCTCATCAAGATTCTATTCGCGACGGAGACTTTCTCCATTGGTCT
CAACATGCCGGCGAGGACGGTGGTGTTCACTAACACCCGTAAATTTGACG
GACAGGATTTCAGGTGGATAACGTCGGGAGAGTATATCCAGATGAGCGGG
CGCGCGGGAAGGCGAGGCAAGGACGACCGAGGCATCGTTATCCAAATGCT
TGACGAGAAGATGGATCCTCAAGTAGCGAAGGGAATGCTGTACGGAGAGG
CAGATGCCTTGAACAGCTCCTACCACATCAGCTACAACATGCTTTTGAAC
ATGCTGAGAGTGGAAGACGCTGATCCGGATTTCTTGGTTAAGAGCTCGTT
TCACCAGTTCCAACAGGAGGCATCTGCGCCAGCTCTGGAGGACGAGGCAA
GCAACCTAGATGGCGAAAAGGCTTTGCTTGCAGCCGGGTTGAAGGACGAA
GAACGAACCTCGGAATACTTTCTTGTACTTCAGCAGCTCGAACGAACACG
GGGGGATGTGCGCCGCGTAATACAGCGTCCTGAGAACTGCCTCCCTTACA
TCCAGACGGGGCGTTTGCTTCGCATGAGGGGTTGGCCAGTCGGGCATGGA
GACCAAGGTAACAAACCCCAGGCAAGCGGGGTTGACGGGCAAAAGGGAGA
TCTTCAAAGCGGCCATGAAAATAGTGGCGAGCTAGACTGGGGATGGGGAG
CGATTGTAGATCTACAGAGAAAGCCTGCGAGCAAAGCTGGCGATCCCGCC
AAGTTCGAGGTTGCTGTGCTGGTGATGTGCAAGCCGGAGGACGGCAAACG
TGGAAAAGAATATCTCCCTCCCGCGCCGATGAAGGACGGCGAAATGCGAG
TCTTGCACTTCACGCTTGGATCTATGGTAGAACTGAGCTCCGTTCGGCTA
TTGATGCCGCCAGACCTGCGAGCGGCGGAGAGGCGGGCGGCAGTGGCGGA
GAGCATGAAAGAAGCGGTTCGCAGATTACAAGACCCCTCCTTGGAGAAGC
TTCTAGCAAGAGAGACACAGCTGCAGCTTCGTCTAGACGGTCTGCCGTTT
CACGATGACCAAGACCGAGAGGAGCAACTACAAAGGTTTACGGCGATGCA
ACACCTAGCTGACAAGGCTAAACTTCTCCGGAAGGAGGCGAAAGGTGTCC
AACACATGGTGATGAAAGACGAGATGCGCCGGAGGAAGCGTGTATTGCGG
AGGCTCGGCCACTGCGACTCCGATGGGGTCATCCAACTGAAAGGGCGCGT
CGCCTGCGAGATCAACACCTGCGATGAGCTCGTAGTAACAGAGCTCATTT
TCAGTGGGGCATTCACAGAGCTCACTCCCGAACAAAGCGCTGCCGTCCTG
AGCTGCATGGTTCACCAGGTGAGCTTGTAA
back to top