mRNA_H-canaliculatus_M_contigs77657.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77657.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77657.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77657.1.1 vs.
Match: Fibronectin (type-III domain-containing protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A842QLB6_9ARCH)

HSP 1 Score: 60.8 bits (146), Expect = 2.980e-8
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:   70 EGLEIFDVSDPTDIRRLGGITSPGAQFTQVDAVGSLAFFTGGTNGLLSIDVSDPVNPTILDQISIPGLNGSATDVEVLGAVAFVSTTADGSGGLVAFDVSNPS 378
            +G+ +  +   TD   LG  T  G +   +   G +A+  GG +GL ++D+SDP+NP +LD I + G       ++V G +A+V+    G GGL  FDV NPS
Sbjct:  392 DGVRVLTIMHQTDFFELG--TYSGKKALDIRVQGDIAYVVGGDDGLYTLDISDPLNPVLLDSILV-GDTKYYRKLDVQGHLAYVADYGSG-GGLRVFDVQNPS 490
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77657.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Heimdallarchaeota archaeon TaxID=2026747 RepID=A0A497R258_9ARCH)

HSP 1 Score: 54.7 bits (130), Expect = 3.830e-6
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:    7 GATQVVDLVGSTLFATGTVNIEGLEIFDVSDPTDIRRLGGITSPGAQFTQVDAVGSLAFFTGGTNGLLSIDVSDPVNPTILDQISIPGLNGSATDVEVLGAVAFVSTT 330
            G    + L  + LF  G      LEI DVSDPT+I ++G ++  G  + ++   G LAF   G  GL+ ++VS P NP  +   +   L   A DV V G +AFV+ +
Sbjct:  127 GIFNAITLRDNYLFLGGRYG--DLEILDVSDPTNITKVGNMSGTGDVW-EIVFDGDLAFLASGNKGLVIVNVSVPENPVEIGNYNTNDL--FAMDVRVAGNIAFVANS 229
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77657.1.1 vs.
Match: Beta_helix (domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A522U9N1_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.760e-5
Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:   10 ATQVVDLVGSTLFATGTVNIEGLEIFDVSDPTDIRRLGGITSPGAQFTQVDAVGSLAFFTG------GTNGLLSIDVSDPVNPTILDQISIPGLNGSATDVEVLGAVAFVSTTADGSGGLVAFD 363
            A  V   + + + ++G +  E L + DV++P D+R LG +  P A +T    +  LAF  G      G  GLL+ID++DP++P+I  Q+ +PG    A  V + G  A+V   A GSGGL+  D
Sbjct:  593 AVDVSGNLAALIGSSGGLTSE-LALADVTNPADMRGLGTLRLP-ASYTGRPRM--LAFADGRLYVADGAAGLLAIDITDPLHPSIAAQLRVPG---GAEGVVMEGHYAYV---AGGSGGLIIVD 706
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77657.1.1 vs.
Match: Probable (pectate lyase C n=1 Tax=Tichowtungia aerotolerans TaxID=2697043 RepID=A0A6P1MIE9_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.290e-5
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:   73 GLEIFDVSDPTDIRRLGGITSPGAQF----TQVDAVGS--------LAFFTGGTNGLLSIDVSDPVNPTILDQISIPGLNGSATDVEVLGAVAFVSTTADGSGG-----LVAFDVSNPS 378
            GL I D+S+P +  R G + + G +F       D   S        +A    GTNGL+ +DVS+P+ PT L   + PG    A  V V G  A++   ADG+GG     L   D+SNPS
Sbjct:  648 GLTIIDISNPENPFRAGSLGAVGERFGIASLNTDGFASGVAVTTNGIACIADGTNGLVVVDVSNPLIPTKLASYNTPG---KAVRVVVQGNYAYI---ADGNGGYYVGGLEVVDISNPS 760
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77657.1.1 vs.
Match: Fibronectin (type-III domain-containing protein n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524ELZ9_THOAR)

HSP 1 Score: 50.8 bits (120), Expect = 9.350e-5
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   70 EGLEIFDVSDPTDIRRLGGITSPGAQFTQVDAVGSLAFFTGGTNGLLSIDVSDPVNPTILDQISIPGLNGSATDVEVLGAVAFVSTTADGSGGLVAFDVSNPS 378
            +G+        TD  +L       A   +V   G +A+  GG++GL +++VSDP NP +LD I++ G       ++V G  A+V+    G GGL  F+V NPS
Sbjct:  374 DGVRALRYMHQTDFYKLASYNERKALDIRVQ--GEIAYVAGGSDGLYTLNVSDPANPVLLDNITV-GFPEFYRKLDVQGHYAYVADYGPG-GGLRIFNVCNPS 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77657.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Fibronectin2.980e-835.92type-III domain-containing protein n=1 Tax=Candida... [more]
Uncharacterized3.830e-635.19protein n=1 Tax=Candidatus Heimdallarchaeota archa... [more]
Beta_helix2.760e-535.48domain-containing protein n=1 Tax=bacterium TaxID=... [more]
Probable5.290e-536.13pectate lyase C n=1 Tax=Tichowtungia aerotolerans ... [more]
Fibronectin9.350e-533.98type-III domain-containing protein n=1 Tax=Thorarc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77657contigH-canaliculatus_M_contigs77657:34..411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog215803.DB30_5455
PFAMsBig_5,LVIVD,TIG
Model size378
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.11e-09
EggNOG OGsCOG0823@1|root,COG5276@1|root,COG0823@2|Bacteria,COG5276@2|Bacteria,1Q8G3@1224|Proteobacteria,438JI@68525|delta/epsilon subdivisions,2X3U7@28221|Deltaproteobacteria,2YX4C@29|Myxococcales
Descriptionig-like, plexins, transcription factors
Cds size378
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.777386-CDS-H-canaliculatus_M_contigs77657:33..4111696854113.777386-CDS-H-canaliculatus_M_contigs77657:33..411Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77657 34..411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77657.1.1prot_H-canaliculatus_M_contigs77657.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77657 34..411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77657.1.1

>prot_H-canaliculatus_M_contigs77657.1.1 ID=prot_H-canaliculatus_M_contigs77657.1.1|Name=mRNA_H-canaliculatus_M_contigs77657.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=126bp
LGGATQVVDLVGSTLFATGTVNIEGLEIFDVSDPTDIRRLGGITSPGAQF
TQVDAVGSLAFFTGGTNGLLSIDVSDPVNPTILDQISIPGLNGSATDVEV
LGAVAFVSTTADGSGGLVAFDVSNPS
back to top

mRNA from alignment at H-canaliculatus_M_contigs77657:34..411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77657.1.1 ID=mRNA_H-canaliculatus_M_contigs77657.1.1|Name=mRNA_H-canaliculatus_M_contigs77657.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=378bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77657:34..411- (Hapterophycus canaliculatus Oshoro7m male)
CTTGGCGGCGCCACCCAAGTCGTCGACTTAGTTGGATCCACTTTATTTGC
CACTGGAACCGTAAACATCGAGGGCCTAGAAATCTTTGATGTATCCGACC
CCACAGACATTCGTCGACTTGGCGGCATCACGTCACCGGGAGCGCAGTTT
ACCCAAGTCGATGCGGTCGGTTCTCTCGCGTTTTTCACCGGCGGCACCAA
TGGACTGCTTTCGATCGATGTTTCTGACCCCGTTAACCCAACGATTCTCG
ATCAAATTTCGATTCCTGGCCTCAATGGCTCTGCGACGGACGTTGAGGTC
TTGGGGGCGGTCGCATTTGTATCGACCACAGCGGATGGATCGGGCGGATT
GGTTGCTTTCGACGTCAGTAACCCCTCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77657:34..411-

>mRNA_H-canaliculatus_M_contigs77657.1.1 ID=mRNA_H-canaliculatus_M_contigs77657.1.1|Name=mRNA_H-canaliculatus_M_contigs77657.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=378bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77657:34..411- (Hapterophycus canaliculatus Oshoro7m male)
CTTGGCGGCGCCACCCAAGTCGTCGACTTAGTTGGATCCACTTTATTTGC
CACTGGAACCGTAAACATCGAGGGCCTAGAAATCTTTGATGTATCCGACC
CCACAGACATTCGTCGACTTGGCGGCATCACGTCACCGGGAGCGCAGTTT
ACCCAAGTCGATGCGGTCGGTTCTCTCGCGTTTTTCACCGGCGGCACCAA
TGGACTGCTTTCGATCGATGTTTCTGACCCCGTTAACCCAACGATTCTCG
ATCAAATTTCGATTCCTGGCCTCAATGGCTCTGCGACGGACGTTGAGGTC
TTGGGGGCGGTCGCATTTGTATCGACCACAGCGGATGGATCGGGCGGATT
GGTTGCTTTCGACGTCAGTAACCCCTCC
back to top