mRNA_H-canaliculatus_M_contigs77621.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77621.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77621.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.780e-20
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   31 QKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            +KMSIVIKA+GEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR
Sbjct:  218 EKMSIVIKAQGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 264
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 5.800e-19
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:   31 QKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            +KMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAA++IASTVAR
Sbjct:  256 EKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAAKEIASTVAR 302
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBB7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.740e-15
Identity = 34/51 (66.67%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   19 RSSIQKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            R+  +K  I+++A+GEA++A+LVGEAIKDNPGFIQLRRIDAAR IA TV++
Sbjct:   25 RARQEKEGIIVRAKGEAEAARLVGEAIKDNPGFIQLRRIDAARSIAETVSK 75
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BG24_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 3.130e-15
Identity = 36/51 (70.59%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   19 RSSIQKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            R+  +K S+VIKAEGEA+SAKL+G+AIKDNPGFIQLR+++AARDIA+TV++
Sbjct:  219 RAVQEKKSMVIKAEGEAKSAKLIGDAIKDNPGFIQLRKLEAARDIATTVSK 269
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.800e-15
Identity = 35/47 (74.47%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   31 QKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            +KMSIV+KA+GEA+SA L+G+AIKDNPGF+QLRRIDAAR+IA+TV++
Sbjct:  220 EKMSIVLKAKGEAESAALIGKAIKDNPGFLQLRRIDAAREIATTVSK 266
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N9N1_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 4.820e-14
Identity = 31/47 (65.96%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   31 QKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            +K S+VI+A+GEAQSAKL+G+A++DNPGF+QLRR++AARDIA T+++
Sbjct:  224 EKRSVVIRAQGEAQSAKLIGDAVRDNPGFLQLRRLEAARDIAGTLSK 270
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XRM2_GALSU)

HSP 1 Score: 72.8 bits (177), Expect = 8.240e-14
Identity = 33/45 (73.33%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:   34 KMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVA 168
            K SI+I+A+GEAQSAKL+GEA+K+NPGFI+LR+I+AARDIA+T+A
Sbjct:  221 KKSIIIRAQGEAQSAKLIGEAMKNNPGFIKLRKIEAARDIANTIA 265
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNB9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.360e-14
Identity = 32/47 (68.09%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   31 QKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            +K SI++KAEGEA+SA+LVG+AI+DNPGF++LR+ID A++IA+TVAR
Sbjct:  243 EKKSIIVKAEGEAESARLVGKAIQDNPGFVKLRKIDTAKEIATTVAR 289
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y4Q0_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 1.000e-13
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   19 RSSIQKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            R+  +K SI++KA+GEAQSA+L+G+AIK+ PGFI LR+IDAA+DIAS +AR
Sbjct:  216 RARQEKQSIIVKADGEAQSAQLIGDAIKNKPGFIALRKIDAAKDIASVIAR 266
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BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Match: Prohibitin (n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX85_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-13
Identity = 33/47 (70.21%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   31 QKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARDIASTVAR 171
            +K SI++KA+GEAQSA+LVG+AI+DNPGF+QLR IDAARDI++ VA+
Sbjct:  221 EKRSIILKAQGEAQSAELVGKAIRDNPGFVQLRMIDAARDISTIVAK 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77621.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Prohibitin9.780e-2095.74n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 R... [more]
Prohibitin5.800e-1993.62n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Prohibitin1.740e-1566.67n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 Re... [more]
Prohibitin3.130e-1570.59n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S... [more]
Prohibitin3.800e-1574.47n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z... [more]
Prohibitin4.820e-1465.96n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A... [more]
Prohibitin8.240e-1473.33n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M... [more]
Prohibitin9.360e-1468.09n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A... [more]
Prohibitin1.000e-1364.71n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 ... [more]
Prohibitin1.020e-1370.21n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77621contigH-canaliculatus_M_contigs77621:163..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0Y3
Preferred namePHB2
PFAMsBand_7
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K17081
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000001,GO:0000003,GO:0000060,GO:0000819,GO:0001101,GO:0001302,GO:0001666,GO:0001763,GO:0001932,GO:0001934,GO:0002009,GO:0002082,GO:0003006,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0005911,GO:0006140,GO:0006355,GO:0006457,GO:0006606,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006851,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007049,GO:0007059,GO:0007062,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007548,GO:0007568,GO:0007569,GO:0007588,GO:0008022,GO:0008104,GO:0008134,GO:0008150,GO:0008285,GO:0008406,GO:0009506,GO:0009507,GO:0009536,GO:0009611,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016363,GO:0017038,GO:0019219,GO:0019220,GO:0019222,GO:0019866,GO:0019867,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022612,GO:0023051,GO:0023056,GO:0023057,GO:0030001,GO:0030054,GO:0030154,GO:0030162,GO:0030312,GO:0030331,GO:0030421,GO:0030879,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031536,GO:0031647,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033143,GO:0033144,GO:0033146,GO:0033147,GO:0033218,GO:0033365,GO:0033554,GO:0033599,GO:0033600,GO:0033993,GO:0034220,GO:0034399,GO:0034504,GO:0034613,GO:0035239,GO:0035257,GO:0035258,GO:0035295,GO:0035632,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0040018,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042695,GO:0042886,GO:0042981,GO:0043051,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043410,GO:0043433,GO:0043467,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045136,GO:0045137,GO:0045184,GO:0045271,GO:0045787,GO:0045840,GO:0045861,GO:0045892,GO:0045927,GO:0045931,GO:0045934,GO:0045937,GO:0046543,GO:0046907,GO:0047485,GO:0048232,GO:0048308,GO:0048311,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048729,GO:0048731,GO:0048732,GO:0048754,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050821,GO:0050896,GO:0051090,GO:0051091,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0055044,GO:0055085,GO:0060255,GO:0060259,GO:0060429,GO:0060443,GO:0060444,GO:0060548,GO:0060562,GO:0060603,GO:0060688,GO:0060744,GO:0060749,GO:0060762,GO:0061138,GO:0061180,GO:0061377,GO:0061458,GO:0062012,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070372,GO:0070374,GO:0070469,GO:0070482,GO:0070584,GO:0070588,GO:0070727,GO:0070838,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071396,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072594,GO:0080090,GO:0090068,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:0098813,GO:1900542,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902531,GO:1902533,GO:1902679,GO:1902806,GO:1902808,GO:1903506,GO:1903507,GO:1903578,GO:1903998,GO:1905330,GO:1990204,GO:2000026,GO:2000027,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue9.51e-20
EggNOG OGsCOG0330@1|root,KOG3090@2759|Eukaryota
Descriptionthelarche
Cds size174
COG categoryO
BRITEko00000,ko03029,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.6614687-CDS-H-canaliculatus_M_contigs77621:162..3361696854113.6614687-CDS-H-canaliculatus_M_contigs77621:162..336Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77621 163..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77621.1.1prot_H-canaliculatus_M_contigs77621.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77621 163..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77621.1.1

>prot_H-canaliculatus_M_contigs77621.1.1 ID=prot_H-canaliculatus_M_contigs77621.1.1|Name=mRNA_H-canaliculatus_M_contigs77621.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=58bp
MLACPARSSIQKMSIVIKAEGEAQSAKLVGEAIKDNPGFIQLRRIDAARD
IASTVAR*
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mRNA from alignment at H-canaliculatus_M_contigs77621:163..336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77621.1.1 ID=mRNA_H-canaliculatus_M_contigs77621.1.1|Name=mRNA_H-canaliculatus_M_contigs77621.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77621:163..336+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCTGGCGTGTCCTGCCCGATCTTCGATACAAAAGATGAGCATCGTGAT
CAAGGCGGAGGGAGAGGCGCAGTCGGCCAAGCTGGTCGGAGAGGCCATCA
AGGACAACCCGGGGTTCATCCAGCTGCGGCGCATCGACGCGGCGAGGGAC
ATCGCCTCTACGGTGGCAAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77621:163..336+

>mRNA_H-canaliculatus_M_contigs77621.1.1 ID=mRNA_H-canaliculatus_M_contigs77621.1.1|Name=mRNA_H-canaliculatus_M_contigs77621.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77621:163..336+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCTGGCGTGTCCTGCCCGATCTTCGATACAAAAGATGAGCATCGTGAT
CAAGGCGGAGGGAGAGGCGCAGTCGGCCAAGCTGGTCGGAGAGGCCATCA
AGGACAACCCGGGGTTCATCCAGCTGCGGCGCATCGACGCGGCGAGGGAC
ATCGCCTCTACGGTGGCAAGGTGA
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