mRNA_H-canaliculatus_M_contigs7761.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7761.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7761.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7761.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU6_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 3.710e-111
Identity = 190/329 (57.75%), Postives = 228/329 (69.30%), Query Frame = 1 
Query:    1 GLVLAWTHAIVTGNGDVALLVEPDSRALPG-RCRADADEATAGTCGWADFFSPMTHLCVFSSQLDLQDFMAARGAGPLIDEWQELGSVDNDGAGDEQHAWGQDPNVRAALEGTATDQVRAMSRVLH----HLRPRLQGIVHSVLREQCGGVFSDKTKAGKYVGMFVHETEGRSNGLFKATETLDCFERASKYLEDLDKYAAGYILASEISGVALVSEDATALAEAKNIVRRYFRNVKSEHIVKVVAGSSASPLSNGEGNSVLSNKCGNPDIGDGDALVQFLAELELMAQADVFVGVASEGFSRLVFLVREALQITRRTSLSMDRKVPFP 972
            GLVLAWTHAI  GNGD+A++VEPD  A  G  C AD +       GW  FF+PM HLCVFSSQ D  DF+A R      D  + LG +D D  GD  HAWGQDP++R ALEGTATDQ +AM+RVLH    H++PRLQG V +VL E     FSDK   GKYVGMFV +TEGR+    K TETLDCFE+A KY+EDLD+++AG+I  SEI+G+ LVSED TAL EAK+IVRRYF  VKS+ +V++VA       + GE +  L + CG  D     AL Q L EL+L+AQADVFVGVASE FS+LVFL+RE LQ  R+TSLSMD   PFP
Sbjct:  113 GLVLAWTHAISNGNGDIAVVVEPDGLAPEGGACPADNEHGDEEAGGWPRFFTPMAHLCVFSSQQDFHDFLATRDLNQPPDG-RHLG-MDEDEGGDPPHAWGQDPDIRKALEGTATDQAQAMARVLHYLLSHVQPRLQGKVQAVLHEPDVAFFSDKP--GKYVGMFVRKTEGRTYKSLKMTETLDCFEKAFKYIEDLDRFSAGHISFSEITGIFLVSEDTTALPEAKSIVRRYFGKVKSDKVVQLVAADPGPSATEGEVD--LRSSCGTSDGEREMALKQTLVELQLLAQADVFVGVASESFSKLVFLMRETLQFARKTSLSMDETTPFP 435
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BLAST of mRNA_H-canaliculatus_M_contigs7761.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D7_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 8.540e-109
Identity = 187/328 (57.01%), Postives = 226/328 (68.90%), Query Frame = 1 
Query:    4 LVLAWTHAIVTGNGDVALLVEPDSRALPG-RCRADADEATAGTCGWADFFSPMTHLCVFSSQLDLQDFMAARGAGPLIDEWQELGSVDNDGAGDEQHAWGQDPNVRAALEGTATDQVRAMSRVLH----HLRPRLQGIVHSVLREQCGGVFSDKTKAGKYVGMFVHETEGRSNGLFKATETLDCFERASKYLEDLDKYAAGYILASEISGVALVSEDATALAEAKNIVRRYFRNVKSEHIVKVVAGSSASPLSNGEGNSVLSNKCGNPDIGDGDALVQFLAELELMAQADVFVGVASEGFSRLVFLVREALQITRRTSLSMDRKVPFP 972
            LVLAWTHAI  GNGD+A++VEP   A  G  C  D +       GW  FF+PM HLCVFSSQ D + F+A R      D  + LG +D D  GD  HAW QDP++R ALEGTA DQV+AM+RVLH    H++PRLQG V +VL E     FSDK   GKYVGMFV +TEGR+    K TETLDCFE+A KY+EDLD+++AG+I  SEI+G+ LVSED TAL EAKNIVRRYF  VKS+ +V++VA    S  + GE +  LS+ CG  D     AL Q L EL+L+AQADVFVGVASE FS+LVFL+RE L   R+TSLSMD+  PFP
Sbjct:   77 LVLAWTHAISNGNGDIAVVVEPHRLAPEGGACPTDKEHGDEEAGGWPRFFTPMAHLCVFSSQQDFRSFLATRDLNKPPDG-RHLG-MDEDEGGDLPHAWDQDPDIRKALEGTAMDQVQAMARVLHYLLSHVQPRLQGKVQAVLHEPDVAFFSDKP--GKYVGMFVRKTEGRTYKSLKMTETLDCFEKAFKYIEDLDRFSAGHISFSEITGIFLVSEDTTALPEAKNIVRRYFGKVKSDKVVQLVAADPGSSATEGEVD--LSSSCGTSDSEREMALKQTLVELQLLAQADVFVGVASESFSKLVFLMRETLHFARKTSLSMDKATPFP 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7761.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.710e-11157.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.540e-10957.01protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7761contigH-canaliculatus_M_contigs7761:2030..5005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G435
Model size999
Max annot lvl2759|Eukaryota
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.5e-14
EggNOG OGsKOG3705@1|root,KOG3705@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_001600.1
EC2.4.1.68
Descriptionglycoprotein 6-alpha-L-fucosyltransferase activity
Cds size999
COG categoryM
CAZyGT23
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7761.1.1prot_H-canaliculatus_M_contigs7761.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7761 2030..5005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.5080166-CDS-H-canaliculatus_M_contigs7761:2029..22301696854113.5080166-CDS-H-canaliculatus_M_contigs7761:2029..2230Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7761 2030..2230 -
1696854113.5210438-CDS-H-canaliculatus_M_contigs7761:2881..30091696854113.5210438-CDS-H-canaliculatus_M_contigs7761:2881..3009Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7761 2882..3009 -
1696854113.5320125-CDS-H-canaliculatus_M_contigs7761:3213..33491696854113.5320125-CDS-H-canaliculatus_M_contigs7761:3213..3349Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7761 3214..3349 -
1696854113.5434093-CDS-H-canaliculatus_M_contigs7761:3865..40151696854113.5434093-CDS-H-canaliculatus_M_contigs7761:3865..4015Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7761 3866..4015 -
1696854113.5539498-CDS-H-canaliculatus_M_contigs7761:4027..40481696854113.5539498-CDS-H-canaliculatus_M_contigs7761:4027..4048Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7761 4028..4048 -
1696854113.5730531-CDS-H-canaliculatus_M_contigs7761:4290..44641696854113.5730531-CDS-H-canaliculatus_M_contigs7761:4290..4464Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7761 4291..4464 -
1696854113.5861156-CDS-H-canaliculatus_M_contigs7761:4816..50051696854113.5861156-CDS-H-canaliculatus_M_contigs7761:4816..5005Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7761 4817..5005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7761.1.1

>prot_H-canaliculatus_M_contigs7761.1.1 ID=prot_H-canaliculatus_M_contigs7761.1.1|Name=mRNA_H-canaliculatus_M_contigs7761.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=333bp
GLVLAWTHAIVTGNGDVALLVEPDSRALPGRCRADADEATAGTCGWADFF
SPMTHLCVFSSQLDLQDFMAARGAGPLIDEWQELGSVDNDGAGDEQHAWG
QDPNVRAALEGTATDQVRAMSRVLHHLRPRLQGIVHSVLREQCGGVFSDK
TKAGKYVGMFVHETEGRSNGLFKATETLDCFERASKYLEDLDKYAAGYIL
ASEISGVALVSEDATALAEAKNIVRRYFRNVKSEHIVKVVAGSSASPLSN
GEGNSVLSNKCGNPDIGDGDALVQFLAELELMAQADVFVGVASEGFSRLV
FLVREALQITRRTSLSMDRKVPFPDRISRSRL*
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mRNA from alignment at H-canaliculatus_M_contigs7761:2030..5005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7761.1.1 ID=mRNA_H-canaliculatus_M_contigs7761.1.1|Name=mRNA_H-canaliculatus_M_contigs7761.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2976bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7761:2030..5005- (Hapterophycus canaliculatus Oshoro7m male)
GGCCTAGTGCTGGCATGGACCCACGCGATCGTCACCGGCAACGGAGACGT
GGCGCTCTTGGTCGAGCCTGATAGCCGCGCGCTTCCCGGTCGGTGCCGAG
CGGACGCAGACGAAGCGACAGCGGGAACTTGTGGGTGGGCGGACTTCTTC
TCGCCGATGACGCACCTCTGTGTCTTCAGCTCGCAGCTGGTGGGTAGTTT
TTAAAGCAAGGTAAGGTAATCCAAGGTAGGTATCCTAGGTAGGTATCCTA
GGTACTTAGGTAGCTTGATGGATTGGTAGGTAGGTACAAGGCGTGGCCCA
GACACAAATAGACCGCAAGCGTCGAGGTTCGTGCAAACGGCACTCTGGGT
GCGAAAATATGATCGCTGCGGAGACATGGTCGTGATGGACACCAGCCTTT
TCCTTGACCCGATTATCCTCGCACCGAGGTCACGCATGAGCTACACAAAC
GAGCGCGGCAAAGTTCGAGCTCCAAACAGCAGGCGAGCACATCCGACACG
GCCGTTGCCCCGTCTCAAGCACACCGACTCGCCGGATGCAGGACCTGCAA
GATTTCATGGCGGCTCGAGGCGCAGGCCCACTGATAGACGAGTGGCAAGA
GCTCGGCTCGGTCGACAACGATGGAGCAGGAGATGAGCAGCATGCCTGGG
GTCAGGACCCAAACGTCCGGGCCGCGCTGGAGGGGACGGCAACGGACCAA
GTCCGAGCTATGTCGGTCAGTACCATGGGGAGGGGTGAAGTGGTGAAGTC
GGACGATTTGGTTGGTGGTGGGTGCATTTTCCTCTCCTTAGAGGTGGGTC
TCCTTCGCTGGACGGCTCGCCCACAAACGTCGTTGTGCACGCACTAGGTG
CGTATTTGTGTTGGGAAGGTTGGGCTGCGCGCCCGCCCCGCTCCGGCCTA
ACCCTAGCGACCCCGGCGTCAAAACCGCCGCGGAAATGTCGCCTCGCCCT
GTTGCAGCGGGTTCTGCACCATCTGCGTGTGTAAGTATAGCCGCGCCTGC
AGGGTATCGTCCACTCCGTGCTTCGGGAGCAGTGCGGCGGGGTCTTCTCC
GACAAGACAAAGGCTGGCAAATACGTCGGTATGTTCGTGCACGAGACCGA
AGGGCGAAGCAACGGGTTGTTCAAGGCGACCGAAACGCTGGTGGGTCTTG
TTGGACGATTGGGATTTGTCGCCCGGCCTGGGACTTCACTTCCTCTTGTC
TAGCCTTGCATCTCGGGGGCGGGAGGTTGGGGGGAGATGAGAAAAGAGTC
TGCTTGGAGTCGGAATCCAGTTCGCGGGTTGATTGGCTTCCGCGTACCTC
CTCTTGGTCCGACGCGACGGCTGCCGGACCTGCTTCTTGGGGTATCGAGC
CGTGCGTGACGCCCAAGCGTTCAACTCCTTCTGGGAAGTGGAGTTGCGTG
CTACGCATACGAGAAGCAAACGCATCTCTCGATGGGCTTTCTAGAGACGA
ACTTTTACGCCTGCCTCTGCTAGCCCTCGTGTCCTTCCTCCCTTCTGTGT
GCGAAGCTGCGCCGCTCCCGGTCCTCCAGGCTGGCGTTGGAAGAAACATA
GTCTGCAGGAGTGCCCGGCGTGGCAATGATGTTTGGTACTTTTCCCACCC
GGGACCCATCTAACCGCGCTCTTGGGTCTGGTCTAACGACCCCCGCCCCG
CCGCAGGACTGTTTTGAGAGGGCTAGCAAGTATCTGGAAGACCTGGACAA
GTACGCCGCGGGCTACATTCTTGCTTCGGAGATTTCGGGAGTAGCCCTCG
TTTCCGAAGATGCCACCGCTCTCGCGGAGGCCAAAAACATAGGTTCGTTT
TTTTGTCGGTGTCGTTGGTTTGCCAAATGATGTTTATCTCCACGTCATCA
AATGACCGCGCACGCACTGGAAAGCTGCAGGTGCAGTTGATTGTACCCCC
TTCAGGTGTTTCATTACATAGACTCGCCTCTGCCTTTGAACCGACGATGG
CTGTTCAACTTGTGTTCGTCTTCGGATGGAAACAATGCTTGGACAGTGCG
CCGCTATTTCCGGAACGTCAAAAGCGAACACATCGTGAAGGTGGTTGCTG
GTAGCTCGGCGTCACCCCTGTCCAACGGCGAGGGGAACAGCGTCCTCAGC
AACAAGTGCGGAAACCCAGACATAGTGGTGAGGGTGTTCGGTGCACGGTC
AGGGAGCCTTCGCCTTTTCCGTTTCGTTTCGATCACAGTTATGAAATCGA
CGTTGCAAGCTTTGAAGCCGTGTGATATCCAAGATGTTGTGTGAGGTTCT
GGGGGGATATCATTCCCTCGAGACACGAAAGGGATACTAAGTGCGGCAGC
CCTGTTATGCAGGTTGCACCGTTATGTCGTGCGATACCAAGGCAGGCGGA
CAATCCAAATCAAGCAGCAGATTCATCGGATATGATTTCGCGGTAGATCA
TGGTCGAACGTTGTGACGCCCAAGTCGTACCCACTTTTGGAGTTCCCGGG
TACGAAGTCTCCCGATGTTGTTTGCGTGTGGCCAAGTGGGCGCTGTGTGT
CCCCGCCCCTCATCTCTCTTTCCCCCGTCGAAGTCCATGCTCCAGGACGT
AAGATTTCTGTCCCATCCGGACGCGAAGTGCATCCGTGTTATGGCGCGTC
CCTTCTATCTCCTACGCAACATCGAAAACTCAGTCGACCAAAACATATCG
TAGGCGGCTCCACCCAGTATCACCCGAGGTGCAGCGAGTGATCACTTTCA
AACCTACGTTAGTGCTTCCGCTTACTCTCTCGTCCCGCCGGTCCTTCCGA
CCTCATCGGACGTCGCTGCGCGCAGGGCGACGGCGATGCACTCGTGCAAT
TTCTGGCGGAGCTGGAGCTGATGGCGCAGGCAGACGTGTTCGTCGGAGTA
GCTTCGGAAGGATTCAGCCGGCTCGTCTTTCTCGTACGCGAGGCCCTCCA
AATCACGAGACGAACGTCGCTAAGCATGGACCGGAAAGTACCGTTTCCCG
ACCGGATTTCGAGAAGTAGACTTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7761:2030..5005-

>mRNA_H-canaliculatus_M_contigs7761.1.1 ID=mRNA_H-canaliculatus_M_contigs7761.1.1|Name=mRNA_H-canaliculatus_M_contigs7761.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=999bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7761:2030..5005- (Hapterophycus canaliculatus Oshoro7m male)
GGCCTAGTGCTGGCATGGACCCACGCGATCGTCACCGGCAACGGAGACGT
GGCGCTCTTGGTCGAGCCTGATAGCCGCGCGCTTCCCGGTCGGTGCCGAG
CGGACGCAGACGAAGCGACAGCGGGAACTTGTGGGTGGGCGGACTTCTTC
TCGCCGATGACGCACCTCTGTGTCTTCAGCTCGCAGCTGGACCTGCAAGA
TTTCATGGCGGCTCGAGGCGCAGGCCCACTGATAGACGAGTGGCAAGAGC
TCGGCTCGGTCGACAACGATGGAGCAGGAGATGAGCAGCATGCCTGGGGT
CAGGACCCAAACGTCCGGGCCGCGCTGGAGGGGACGGCAACGGACCAAGT
CCGAGCTATGTCGCGGGTTCTGCACCATCTGCGTCCGCGCCTGCAGGGTA
TCGTCCACTCCGTGCTTCGGGAGCAGTGCGGCGGGGTCTTCTCCGACAAG
ACAAAGGCTGGCAAATACGTCGGTATGTTCGTGCACGAGACCGAAGGGCG
AAGCAACGGGTTGTTCAAGGCGACCGAAACGCTGGACTGTTTTGAGAGGG
CTAGCAAGTATCTGGAAGACCTGGACAAGTACGCCGCGGGCTACATTCTT
GCTTCGGAGATTTCGGGAGTAGCCCTCGTTTCCGAAGATGCCACCGCTCT
CGCGGAGGCCAAAAACATAGTGCGCCGCTATTTCCGGAACGTCAAAAGCG
AACACATCGTGAAGGTGGTTGCTGGTAGCTCGGCGTCACCCCTGTCCAAC
GGCGAGGGGAACAGCGTCCTCAGCAACAAGTGCGGAAACCCAGACATAGG
CGACGGCGATGCACTCGTGCAATTTCTGGCGGAGCTGGAGCTGATGGCGC
AGGCAGACGTGTTCGTCGGAGTAGCTTCGGAAGGATTCAGCCGGCTCGTC
TTTCTCGTACGCGAGGCCCTCCAAATCACGAGACGAACGTCGCTAAGCAT
GGACCGGAAAGTACCGTTTCCCGACCGGATTTCGAGAAGTAGACTTTGA
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