mRNA_H-canaliculatus_M_contigs77601.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77601.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77601.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BE89_9RHOD)

HSP 1 Score: 110 bits (275), Expect = 5.170e-30
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHRWVG 183
            +VVAWIKRILRVEKTGHSGTLDPKVTGCL+VCIDR+TRLVK+QQSAGKEYVG+ R H  +G
Sbjct:   50 EVVAWIKRILRVEKTGHSGTLDPKVTGCLLVCIDRSTRLVKSQQSAGKEYVGVIRLHSSLG 110
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L510_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.460e-30
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFH 171
            +VV+WIKRILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVKAQQSAGKEYVG+ R H
Sbjct:    3 EVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCLDRATRLVKAQQSAGKEYVGVVRLH 59
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.150e-30
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHRWVGG 186
            +VVAWIKRILRV+KTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFH  V G
Sbjct:  104 EVVAWIKRILRVDKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHSAVDG 165
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3D4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.170e-29
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFH 171
            +VVAWIKRILRVEKTGHSGTLDPKVTGCLIVC DRATRLVKAQQSAGKEY+G+ R H
Sbjct:  100 EVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCCDRATRLVKAQQSAGKEYIGIVRLH 156
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit 4-like n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NX62_9TELE)

HSP 1 Score: 110 bits (276), Expect = 4.970e-29
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHRWV 180
            +VVAWI+RILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVK+QQSAGKEYVG+ R H  +
Sbjct:   79 EVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVGIVRLHNAI 138
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit DKC1-like n=1 Tax=Antrostomus carolinensis TaxID=279965 RepID=UPI000528AC26)

HSP 1 Score: 109 bits (273), Expect = 5.300e-29
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHRWV 180
            +VVAWI+RILRVEKTGHSGTLDPKVTGCLIVCI+RATRLVK+QQSAGKEYVG+ R H  +
Sbjct:   76 EVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAI 135
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit DKC1-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4BF9A8)

HSP 1 Score: 110 bits (275), Expect = 6.210e-29
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFH 171
            +VVAWI+RILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVK+QQSAGKEYVG+ R H
Sbjct:   61 EVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQSAGKEYVGIVRLH 117
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BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit DKC1 (Fragment) n=3 Tax=Hominidae TaxID=9604 RepID=H7C0M1_HUMAN)

HSP 1 Score: 110 bits (275), Expect = 1.080e-28
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHRWVGG 186
            +VVAWI+RILRVEKTGHSGTLDPKVTGCLIVCI+RATRLVK+QQSAGKEYVG+ R H  + G
Sbjct:   90 EVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEG 151
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: H/ACA (ribonucleoprotein complex subunit 4-like n=1 Tax=Numida meleagris TaxID=8996 RepID=UPI000B3DB469)

HSP 1 Score: 109 bits (273), Expect = 1.210e-28
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHRWV 180
            +VVAWI+RILRVEKTGHSGTLDPKVTGCLIVCI+RATRLVK+QQSAGKEYVG+ R H  +
Sbjct:   77 EVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAI 136
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Match: Dyskeratosis (congenita 1, dyskerin n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3D5V3_ORYME)

HSP 1 Score: 111 bits (278), Expect = 1.470e-28
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGLARFHRWV 180
            +VVAWI+RILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVK+QQSAGKEYVG+ R H  V
Sbjct:  104 EVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVGIVRLHNAV 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77601.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical5.170e-3083.61protein (Fragment) n=1 Tax=Rhodosorus marinus TaxI... [more]
Hypothetical7.460e-3089.47protein (Fragment) n=1 Tax=Amphora coffeiformis Ta... [more]
Uncharacterized9.150e-3091.94protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX4... [more]
Hypothetical1.170e-2989.47protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
H/ACA4.970e-2983.33ribonucleoprotein complex subunit 4-like n=1 Tax=N... [more]
H/ACA5.300e-2983.33ribonucleoprotein complex subunit DKC1-like n=1 Ta... [more]
H/ACA6.210e-2987.72ribonucleoprotein complex subunit DKC1-like n=1 Ta... [more]
H/ACA1.080e-2882.26ribonucleoprotein complex subunit DKC1 (Fragment) ... [more]
H/ACA1.210e-2883.33ribonucleoprotein complex subunit 4-like n=1 Tax=N... [more]
Dyskeratosis1.470e-2886.67congenita 1, dyskerin n=1 Tax=Oryzias melastigma T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77601contigH-canaliculatus_M_contigs77601:153..338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEX4
Preferred nameDKC1
PFAMsDKCLD,PUA,TruB_C_2,TruB_N
Model size186
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K11131
KEGG ReactionR03663
KEGG Pathwayko00970,ko03008,map00970,map03008
KEGG ModuleM00359,M00360,M00425
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000154,GO:0000454,GO:0000455,GO:0000495,GO:0000723,GO:0001522,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003720,GO:0003723,GO:0003824,GO:0003964,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006403,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007275,GO:0007276,GO:0007281,GO:0007444,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0009058,GO:0009059,GO:0009451,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009982,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010638,GO:0010833,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016556,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0016853,GO:0016866,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022412,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0030515,GO:0031118,GO:0031120,GO:0031123,GO:0031126,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033979,GO:0034061,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034964,GO:0035220,GO:0035295,GO:0040031,GO:0042127,GO:0042221,GO:0042254,GO:0042592,GO:0043085,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043489,GO:0043628,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0045934,GO:0045935,GO:0046483,GO:0046689,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0055044,GO:0060249,GO:0060255,GO:0060341,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070201,GO:0070202,GO:0070203,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0080090,GO:0090304,GO:0090661,GO:0090666,GO:0090669,GO:0090670,GO:0090685,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902369,GO:1902494,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:1990481,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons1
Evalue1.5e-30
EggNOG OGsCOG0130@1|root,KOG2529@2759|Eukaryota
EC6.1.1.3
DescriptionmRNA pseudouridine synthesis
Cds size186
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009,ko03016,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.4742815-CDS-H-canaliculatus_M_contigs77601:152..3381696854113.4742815-CDS-H-canaliculatus_M_contigs77601:152..338Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77601 153..338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77601.1.1prot_H-canaliculatus_M_contigs77601.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77601 153..338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77601.1.1

>prot_H-canaliculatus_M_contigs77601.1.1 ID=prot_H-canaliculatus_M_contigs77601.1.1|Name=mRNA_H-canaliculatus_M_contigs77601.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=62bp
KVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEY
VGLARFHRWVGG
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mRNA from alignment at H-canaliculatus_M_contigs77601:153..338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77601.1.1 ID=mRNA_H-canaliculatus_M_contigs77601.1.1|Name=mRNA_H-canaliculatus_M_contigs77601.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77601:153..338- (Hapterophycus canaliculatus Oshoro7m male)
AAGGTGGTGGCGTGGATCAAGCGCATCCTCCGCGTGGAGAAGACCGGCCA
CAGCGGCACCCTCGACCCGAAAGTGACTGGGTGCCTGATCGTGTGCATAG
ACCGCGCGACGAGGCTCGTGAAGGCCCAGCAGAGCGCCGGGAAGGAGTAC
GTGGGCCTCGCACGGTTTCACAGGTGGGTGGGTGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77601:153..338-

>mRNA_H-canaliculatus_M_contigs77601.1.1 ID=mRNA_H-canaliculatus_M_contigs77601.1.1|Name=mRNA_H-canaliculatus_M_contigs77601.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77601:153..338- (Hapterophycus canaliculatus Oshoro7m male)
AAGGTGGTGGCGTGGATCAAGCGCATCCTCCGCGTGGAGAAGACCGGCCA
CAGCGGCACCCTCGACCCGAAAGTGACTGGGTGCCTGATCGTGTGCATAG
ACCGCGCGACGAGGCTCGTGAAGGCCCAGCAGAGCGCCGGGAAGGAGTAC
GTGGGCCTCGCACGGTTTCACAGGTGGGTGGGTGGG
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