mRNA_H-canaliculatus_M_contigs77594.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77594.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77594.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77594.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Kordia sp. TaxID=1965332 RepID=A0A2G2KHQ3_9FLAO)

HSP 1 Score: 81.6 bits (200), Expect = 1.840e-18
Identity = 37/87 (42.53%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 INKLSDNAEIMQTKDIVINSILFFFLGNSFASAFYFLRDTNVYEDLINEIPFFGKKLVRYLFIGSSVLGIPLIYFFILIYKHFKLKN 261
            +N L+DN+E +  + ++ NS +FF  G S ASA YF+R T+ +++   EIP  G  +++Y+ IGSS++GIP+IYFF L+Y+  K ++
Sbjct:    1 MNTLTDNSETISRETLITNSAIFFAFGISIASAIYFVRKTDTFDEF-QEIPLIGFTIMKYIVIGSSIIGIPIIYFFYLVYQFIKKED 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77594.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.840e-1842.53protein n=1 Tax=Kordia sp. TaxID=1965332 RepID=A0A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77594contigH-canaliculatus_M_contigs77594:127..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size270
Hectar predicted targeting categorysignal peptide
Exons1
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.1282532-UTR-H-canaliculatus_M_contigs77594:126..1561696854113.1282532-UTR-H-canaliculatus_M_contigs77594:126..156Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs77594 127..156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854113.1485438-CDS-H-canaliculatus_M_contigs77594:156..3961696854113.1485438-CDS-H-canaliculatus_M_contigs77594:156..396Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77594 157..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77594.1.1prot_H-canaliculatus_M_contigs77594.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77594 157..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77594.1.1

>prot_H-canaliculatus_M_contigs77594.1.1 ID=prot_H-canaliculatus_M_contigs77594.1.1|Name=mRNA_H-canaliculatus_M_contigs77594.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=80bp
MQTKDIVINSILFFFLGNSFASAFYFLRDTNVYEDLINEIPFFGKKLVRY
LFIGSSVLGIPLIYFFILIYKHFKLKNHQ*
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mRNA from alignment at H-canaliculatus_M_contigs77594:127..396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77594.1.1 ID=mRNA_H-canaliculatus_M_contigs77594.1.1|Name=mRNA_H-canaliculatus_M_contigs77594.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=270bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77594:127..396+ (Hapterophycus canaliculatus Oshoro7m male)
ATAAATAAACTTTCTGACAATGCAGAAATAATGCAAACAAAAGATATCGT
AATTAATAGCATTCTTTTTTTCTTTTTAGGCAATTCTTTTGCTAGCGCTT
TTTATTTTTTACGAGATACAAATGTTTATGAAGATCTAATTAATGAAATT
CCTTTTTTCGGAAAAAAACTTGTCAGATATTTATTTATAGGGAGTTCCGT
TTTAGGAATACCTCTCATTTATTTTTTTATATTGATTTATAAACATTTTA
AACTTAAAAACCATCAATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77594:127..396+

>mRNA_H-canaliculatus_M_contigs77594.1.1 ID=mRNA_H-canaliculatus_M_contigs77594.1.1|Name=mRNA_H-canaliculatus_M_contigs77594.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77594:127..396+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCAAACAAAAGATATCGTAATTAATAGCATTCTTTTTTTCTTTTTAGG
CAATTCTTTTGCTAGCGCTTTTTATTTTTTACGAGATACAAATGTTTATG
AAGATCTAATTAATGAAATTCCTTTTTTCGGAAAAAAACTTGTCAGATAT
TTATTTATAGGGAGTTCCGTTTTAGGAATACCTCTCATTTATTTTTTTAT
ATTGATTTATAAACATTTTAAACTTAAAAACCATCAATGA
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