mRNA_H-canaliculatus_M_contigs77593.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Phage (integrase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=B7RNF4_ROSS0) HSP 1 Score: 276 bits (706), Expect = 3.810e-91 Identity = 130/168 (77.38%), Postives = 149/168 (88.69%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
LSK ANGW NPCR E+VRAT+RGI+RVKGTAQ QA+PLLREDLFLVLD L +D R++RDRALLL+GWAGGFRSSELTGLD++D+EEVREGL+LHLR+SKTDQTGQGRK+GIPLGRTRHCPVAAL+ W L +PD ++FRPVDRHGN+R MLR DAVSTILR RL
Sbjct: 67 LSKAHEANGWPNPCRKELVRATLRGIKRVKGTAQAQARPLLREDLFLVLDALDDDPRSLRDRALLLVGWAGGFRSSELTGLDLSDIEEVREGLILHLRKSKTDQTGQGRKIGIPLGRTRHCPVAALSGWRQALPEPDGRVFRPVDRHGNVRGPMLRPDAVSTILRDRL 234
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Phage (integrase n=1 Tax=Roseobacter sp. CCS2 TaxID=391593 RepID=A4EDW3_9RHOB) HSP 1 Score: 276 bits (707), Expect = 5.820e-91 Identity = 133/169 (78.70%), Postives = 148/169 (87.57%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRLT 507
LSK+ +ANGW+NPC AE+VRAT+RGI+RVKGTAQDQAKPLLREDLFLVLD LG R RDRALLLIGW GGFRSSELTGL V+D+E+ REG++LHLRRSKTDQTG+GRK+GIPLGRTRHCPVAALTAWL N+P KIF PVDRHGNLR + LR DAVSTILR RLT
Sbjct: 91 LSKVHAANGWDNPCCAEVVRATLRGIKRVKGTAQDQAKPLLREDLFLVLDALGNGIRTKRDRALLLIGWGGGFRSSELTGLQVSDIEDAREGIILHLRRSKTDQTGEGRKVGIPLGRTRHCPVAALTAWLAATNRPVGKIFLPVDRHGNLRGDQLRPDAVSTILRDRLT 259
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: tyrosine-type (recombinase/integrase n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C989C2F) HSP 1 Score: 273 bits (698), Expect = 1.350e-89 Identity = 130/168 (77.38%), Postives = 147/168 (87.50%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
LS + AN W NPCR+EIVRATMRGI+RVKGTAQDQA+PLLREDLF++LDTLG+D R RDRALLLIGWAGGFRSSEL GLD+ D+EEVREGLVLHLRRSKTDQTGQGRK+GIPLGRTRHCPV +L+AWL L + IFRPVDRHGN++ + LR+DAVSTILR RL
Sbjct: 91 LSMVHKANAWPNPCRSEIVRATMRGIKRVKGTAQDQARPLLREDLFILLDTLGDDARGKRDRALLLIGWAGGFRSSELVGLDLADIEEVREGLVLHLRRSKTDQTGQGRKIGIPLGRTRHCPVGSLSAWLSVLASEEGPIFRPVDRHGNVQSDRLRSDAVSTILRNRL 258
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Integrase (n=1 Tax=Thalassococcus sp. S3 TaxID=2017482 RepID=A0A4P6MH70_9RHOB) HSP 1 Score: 270 bits (690), Expect = 2.210e-88 Identity = 132/168 (78.57%), Postives = 146/168 (86.90%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
LSK+ AN NPCR+EIVRATMRGI+RVKGTAQDQA+PLLREDLF +LD LG+D RA RDRALLLIGWAGGFRSSEL GLD+ D+EEVREGLVLHLRRSKTDQT QGRK+GIPLGRTRHCPVAAL+AWLD D IFRPVDRHGN++ + LR+DAVSTILR RL
Sbjct: 91 LSKVHEANACPNPCRSEIVRATMRGIKRVKGTAQDQARPLLREDLFTLLDALGDDPRAFRDRALLLIGWAGGFRSSELVGLDLVDIEEVREGLVLHLRRSKTDQTRQGRKIGIPLGRTRHCPVAALSAWLDAQRVNDGPIFRPVDRHGNVQPDRLRSDAVSTILRNRL 258
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: site-specific (integrase n=1 Tax=Gemmobacter sp. LW-1 TaxID=1529005 RepID=UPI0006C75F03) HSP 1 Score: 264 bits (674), Expect = 5.710e-86 Identity = 127/169 (75.15%), Postives = 146/169 (86.39%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRLT 507
LSK+ +AN W NPC++E+VRAT+RGIRRVKGTAQDQA+PLLREDLFL+LD L +D RA RDRALLLIGWAGGFRSSEL GLD +DVEEVREGLVL+LRRSKTDQ G GRK+G+PLGRTRHCPVAAL AWL D +FRPVDRHG+++ + LR+DAVSTILR RLT
Sbjct: 90 LSKVHAANDWPNPCQSEVVRATLRGIRRVKGTAQDQARPLLREDLFLILDALDDDARAQRDRALLLIGWAGGFRSSELVGLDWSDVEEVREGLVLNLRRSKTDQMGHGRKIGVPLGRTRHCPVAALAAWLKASGGDDGPLFRPVDRHGHIQPDRLRSDAVSTILRDRLT 258
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Site-specific (recombinase XerC n=1 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A2T6CD06_9RHOB) HSP 1 Score: 258 bits (659), Expect = 1.110e-83 Identity = 126/168 (75.00%), Postives = 146/168 (86.90%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
LSK +N W NP R+E+VRATMRGI+RVKGTAQ+QA+PLLREDLF++LD+LG DTRAIRDRALLLIGWAGGFRS+EL GL+ DVEEVREGLVL+LRRSKTDQTGQGRK+GIP GRTR+CPV AL+AWL+ L+ IFRPVDRHGN++ LR+DAVSTILR RL
Sbjct: 91 LSKAHDSNDWPNPVRSELVRATMRGIKRVKGTAQNQARPLLREDLFIMLDSLGVDTRAIRDRALLLIGWAGGFRSAELVGLEPADVEEVREGLVLYLRRSKTDQTGQGRKIGIPRGRTRNCPVVALSAWLEVLHSDGGPIFRPVDRHGNVQPGRLRSDAVSTILRNRL 258
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Integrase (n=1 Tax=Sulfitobacter sp. SK011 TaxID=1389004 RepID=A0A345Q9U6_9RHOB) HSP 1 Score: 226 bits (575), Expect = 7.520e-71 Identity = 110/168 (65.48%), Postives = 129/168 (76.79%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILRGRL 504
+SK+ SAN W NPCR+E+VR T++GIRR KGTAQ QAKPLLR+DLFLVLD++GE R RDRALLL+GWAGG R+SEL GL D+E V EGL+LHLRRSKTDQ G+GRK+GIPLGRTRHCPV AL W + +F VDRHG + LR+DAVSTILR L
Sbjct: 100 ISKVHSANSWPNPCRSELVRTTLQGIRRAKGTAQKQAKPLLRDDLFLVLDSIGESIRDRRDRALLLLGWAGGMRASELVGLRTDDIEAVSEGLILHLRRSKTDQEGKGRKIGIPLGRTRHCPVTALATWQKYPAEKAGPLFCSVDRHGKVSTTHLRSDAVSTILRNCL 267
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Tyrosine-type (recombinase/integrase n=2 Tax=Pukyongiella litopenaei TaxID=2605946 RepID=A0A5C2H1J9_9RHOB) HSP 1 Score: 205 bits (522), Expect = 1.710e-65 Identity = 98/124 (79.03%), Postives = 111/124 (89.52%), Query Frame = 1
Query: 121 LREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTIL 492
+REDLF++LD LG+D RA+RDRALLLIGWAGGFRSSEL GLD+ DVEEVREG VLHLRRSKTDQ GQGRK+GIPLGRTRHCPVAAL+AWL LN+ + IFRPVDRHGN++ + LRADAVSTIL
Sbjct: 1 MREDLFILLDALGDDPRALRDRALLLIGWAGGFRSSELVGLDLNDVEEVREGRVLHLRRSKTDQMGQGRKIGIPLGRTRHCPVAALSAWLGILNKDEGPIFRPVDRHGNVQPDRLRADAVSTIL 124
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: hypothetical (protein n=1 Tax=Methylobacterium sp. WL69 TaxID=2603893 RepID=UPI001FF0041E) HSP 1 Score: 205 bits (521), Expect = 1.830e-64 Identity = 101/165 (61.21%), Postives = 127/165 (76.97%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILR 495
LSK+ G NPCR+EIVRAT+RGI+R +GTAQ QAKPLL+EDL LVL++L E R RDRALLL+G+ GGFR SEL GLD D+ +VR+GL+ LR SKTDQ G+GR++GIP GRTR+CPVAAL AWL + IFRPVDRHG++++E L +AVS ++R
Sbjct: 11 LSKVHEMAGHPNPCRSEIVRATLRGIKRTRGTAQRQAKPLLKEDLVLVLNSLNETVRDTRDRALLLLGFLGGFRRSELVGLDHDDIVQVRQGLIATLRFSKTDQEGKGREIGIPYGRTRNCPVAALQAWLSHSDIHSGPIFRPVDRHGHVKEERLSGEAVSLVIR 175
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Match: Integrase (n=1 Tax=Methylobacterium sp. WL69 TaxID=2603893 RepID=A0A5C8SMK6_9HYPH) HSP 1 Score: 205 bits (521), Expect = 4.240e-63 Identity = 101/165 (61.21%), Postives = 127/165 (76.97%), Query Frame = 1
Query: 1 LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDTLGEDTRAIRDRALLLIGWAGGFRSSELTGLDVTDVEEVREGLVLHLRRSKTDQTGQGRKLGIPLGRTRHCPVAALTAWLDTLNQPDSKIFRPVDRHGNLRDEMLRADAVSTILR 495
LSK+ G NPCR+EIVRAT+RGI+R +GTAQ QAKPLL+EDL LVL++L E R RDRALLL+G+ GGFR SEL GLD D+ +VR+GL+ LR SKTDQ G+GR++GIP GRTR+CPVAAL AWL + IFRPVDRHG++++E L +AVS ++R
Sbjct: 113 LSKVHEMAGHPNPCRSEIVRATLRGIKRTRGTAQRQAKPLLKEDLVLVLNSLNETVRDTRDRALLLLGFLGGFRRSELVGLDHDDIVQVRQGLIATLRFSKTDQEGKGREIGIPYGRTRNCPVAALQAWLSHSDIHSGPIFRPVDRHGHVKEERLSGEAVSLVIR 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77593.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs77593.1.1 >prot_H-canaliculatus_M_contigs77593.1.1 ID=prot_H-canaliculatus_M_contigs77593.1.1|Name=mRNA_H-canaliculatus_M_contigs77593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=169bp LSKIQSANGWENPCRAEIVRATMRGIRRVKGTAQDQAKPLLREDLFLVLDback to top mRNA from alignment at H-canaliculatus_M_contigs77593:4..510- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs77593.1.1 ID=mRNA_H-canaliculatus_M_contigs77593.1.1|Name=mRNA_H-canaliculatus_M_contigs77593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=507bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77593:4..510- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77593:4..510- >mRNA_H-canaliculatus_M_contigs77593.1.1 ID=mRNA_H-canaliculatus_M_contigs77593.1.1|Name=mRNA_H-canaliculatus_M_contigs77593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=507bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77593:4..510- (Hapterophycus canaliculatus Oshoro7m male)back to top |