mRNA_H-canaliculatus_M_contigs77505.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77505.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77505.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.350e-27
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   43 VQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            V WVET  PF+KRFDHYLDP FF+H+IHWFSI NSFMMVIFLCGLVALILV+TLKNDFAK
Sbjct:  204 VAWVETDVPFDKRFDHYLDPKFFKHRIHWFSIINSFMMVIFLCGLVALILVKTLKNDFAK 263
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZR7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.480e-24
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   40 KVQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            +V W ETS PFE RFD YL+  FFEH+IHWFSIFNSFMMVIFLCGLVALIL+RTLKND+A+
Sbjct:  198 EVAWTETSIPFENRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 258
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.680e-24
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:   40 KVQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            +V WVE+  PF+KRFD YL+P FF+H+IHWFSI NSFMMV+FLCGLVALILV+TLKNDFAK
Sbjct:  203 EVAWVESDVPFDKRFDSYLEPKFFKHRIHWFSIINSFMMVVFLCGLVALILVKTLKNDFAK 263
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Cellulase (domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5B2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.360e-23
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   40 KVQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            +V W ET+ PFE RFD YL+  FFEH+IHWFSIFNSFMMVIFLCGLVALIL+RTLKND+A+
Sbjct:  766 EVAWTETAIPFENRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 826
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y189_PLABS)

HSP 1 Score: 101 bits (252), Expect = 2.330e-23
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:   40 KVQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAKVKLLPD 240
            +V+W+ T+  FE RFDHYLD  FFEH+IHWFSIFNSFMMV+FLCGLV LIL+RTL+ND+AK  L  D
Sbjct:  191 EVEWIPTTELFEDRFDHYLDVDFFEHQIHWFSIFNSFMMVLFLCGLVVLILMRTLRNDYAKYSLEDD 257
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M626_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.760e-23
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   43 VQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            V W ET+  FEKRF+ YL+  FFEHKIHWFSIFNSFMMVIFLCGLVA+I+ RTLKNDFA+
Sbjct:  149 VHWKETTKSFEKRFNRYLEYDFFEHKIHWFSIFNSFMMVIFLCGLVAIIMFRTLKNDFAR 208
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQ45_BRELC)

HSP 1 Score: 100 bits (248), Expect = 8.360e-23
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   49 WVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            W ET+ PFE RFD YL+  FFEH+IHWFSIFNSFMMVIFLCGLVALIL+RTLKND+A+
Sbjct:  203 WYETTIPFEDRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 260
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3Y7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.140e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   43 VQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            V W ET  PFE+R+D YLD  FFEH+IHWFSIFNSFMMVIFLCGLV LIL+RT++NDFAK
Sbjct:   68 VNWHETDKPFEQRWDEYLDNAFFEHQIHWFSIFNSFMMVIFLCGLVFLILIRTVRNDFAK 127
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: Transmembrane (9 superfamily member n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B789_HYAAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.510e-22
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   40 KVQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            + +W ET+ PF+ RFD YL+  FFEH+IHWFSIFNSFMMVIFLCGLVALIL+RTLKND+A+
Sbjct:  200 EAEWSETTIPFDGRFDRYLEDEFFEHQIHWFSIFNSFMMVIFLCGLVALILLRTLKNDYAR 260
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BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Match: transmembrane (9 superfamily member 3-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193E6515)

HSP 1 Score: 92.4 bits (228), Expect = 1.570e-22
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   40 KVQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSFMMVIFLCGLVALILVRTLKNDFAK 222
            +V W  ++T FE RFD YLDP FF+H+IHWFSIFNSFMMVIFL GLV++IL+RTL+ D+A+
Sbjct:   32 EVNWYRSNTKFEDRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYAR 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77505.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Transmembrane2.350e-2785.009 superfamily member n=1 Tax=Ectocarpus siliculosu... [more]
Transmembrane1.480e-2478.699 superfamily member (Fragment) n=1 Tax=Nothophyto... [more]
Transmembrane2.680e-2477.059 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1... [more]
Cellulase1.360e-2377.05domain-containing protein (Fragment) n=1 Tax=Notho... [more]
Transmembrane2.330e-2370.159 superfamily member n=2 Tax=Plasmodiophora brassi... [more]
Transmembrane7.760e-2376.679 superfamily member (Fragment) n=1 Tax=Spumella e... [more]
Transmembrane8.360e-2379.319 superfamily member n=1 Tax=Bremia lactucae TaxID... [more]
Transmembrane1.140e-2276.679 superfamily member n=1 Tax=Pinguiococcus pyrenoi... [more]
Transmembrane1.510e-2273.779 superfamily member n=1 Tax=Hyaloperonospora arab... [more]
transmembrane1.570e-2267.219 superfamily member 3-like n=1 Tax=Nilaparvata lu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77505contigH-canaliculatus_M_contigs77505:86..325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEY0
Preferred nameTM9SF3
PFAMsEMP70
Model size240
Max annot lvl2759|Eukaryota
KEGG koko:K02639,ko:K17087
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Exons1
Evalue3.84e-28
EggNOG OGsKOG1278@1|root,KOG1277@2759|Eukaryota
Ec32 ortholog descriptionNonaspanin (TM9SF)
Ec32 orthologEc-21_005980.1
Descriptionsecretion of lysosomal enzymes
Cds size240
COG categoryI
BRITEko00000,ko00001,ko00194,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854112.3565767-CDS-H-canaliculatus_M_contigs77505:85..3251696854112.3565767-CDS-H-canaliculatus_M_contigs77505:85..325Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77505 86..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77505.1.1prot_H-canaliculatus_M_contigs77505.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77505 86..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77505.1.1

>prot_H-canaliculatus_M_contigs77505.1.1 ID=prot_H-canaliculatus_M_contigs77505.1.1|Name=mRNA_H-canaliculatus_M_contigs77505.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=80bp
PLPPPAKYARPVEKVQWVETSTPFEKRFDHYLDPTFFEHKIHWFSIFNSF
MMVIFLCGLVALILVRTLKNDFAKVKLLPD
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mRNA from alignment at H-canaliculatus_M_contigs77505:86..325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77505.1.1 ID=mRNA_H-canaliculatus_M_contigs77505.1.1|Name=mRNA_H-canaliculatus_M_contigs77505.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77505:86..325+ (Hapterophycus canaliculatus Oshoro7m male)
CCTCTCCCCCCCCCCGCGAAATATGCTCGCCCTGTCGAGAAGGTTCAGTG
GGTCGAGACCAGCACGCCCTTCGAAAAGCGTTTCGACCACTACCTTGACC
CCACCTTCTTCGAGCACAAGATCCACTGGTTCTCCATCTTCAACTCGTTC
ATGATGGTGATCTTCCTCTGCGGTCTCGTCGCTCTCATCTTGGTCCGCAC
GCTGAAGAACGACTTCGCCAAGGTGAAACTTCTCCCAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77505:86..325+

>mRNA_H-canaliculatus_M_contigs77505.1.1 ID=mRNA_H-canaliculatus_M_contigs77505.1.1|Name=mRNA_H-canaliculatus_M_contigs77505.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=240bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77505:86..325+ (Hapterophycus canaliculatus Oshoro7m male)
CCTCTCCCCCCCCCCGCGAAATATGCTCGCCCTGTCGAGAAGGTTCAGTG
GGTCGAGACCAGCACGCCCTTCGAAAAGCGTTTCGACCACTACCTTGACC
CCACCTTCTTCGAGCACAAGATCCACTGGTTCTCCATCTTCAACTCGTTC
ATGATGGTGATCTTCCTCTGCGGTCTCGTCGCTCTCATCTTGGTCCGCAC
GCTGAAGAACGACTTCGCCAAGGTGAAACTTCTCCCAGAC
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