mRNA_H-canaliculatus_M_contigs77435.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77435.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77435.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=12 Tax=root TaxID=1 RepID=A0A1B7ZE46_9FLAO)

HSP 1 Score: 344 bits (882), Expect = 6.350e-116
Identity = 160/170 (94.12%), Postives = 168/170 (98.82%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIPQCEVKF++M ITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDR+KNGWMDVNPGVASSYIFNLKKGD+VTISGPYGEFFINES+SEMLYVGGGAGMAPMRSHLYHLFKTL+T+RKV+YWYGGRSKRELFYLDH
Sbjct:  170 YIQIEIPQCEVKFADMDITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRAKNGWMDVNPGVASSYIFNLKKGDEVTISGPYGEFFINESNSEMLYVGGGAGMAPMRSHLYHLFKTLKTDRKVSYWYGGRSKRELFYLDH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A495DUK1_9FLAO)

HSP 1 Score: 342 bits (877), Expect = 3.630e-115
Identity = 158/170 (92.94%), Postives = 167/170 (98.24%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIPQCEVK++++ ITAHPEEHETPDKF+AEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPG+ASSYIFNLKKGDDV ISGPYGEFFINESD+EMLYVGGGAGMAPMRSHLYHLFKTLRT+RKVTYWYGGRSKRELFYL+H
Sbjct:  170 YIQIEIPQCEVKYADIDITAHPEEHETPDKFKAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGIASSYIFNLKKGDDVVISGPYGEFFINESDAEMLYVGGGAGMAPMRSHLYHLFKTLRTDRKVTYWYGGRSKRELFYLEH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=18 Tax=Flavobacteriaceae TaxID=49546 RepID=G0L1Y1_ZOBGA)

HSP 1 Score: 338 bits (868), Expect = 8.400e-114
Identity = 155/170 (91.18%), Postives = 166/170 (97.65%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIP+CE+K+S++ ITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMAS+PAEGREIMLNVRIATPPWDR+KNGWMDVNPGVASSYIF+LK GDDV ISGPYGEFFINESD+EMLYVGGGAGMAPMRSHLYHLFKTL+TNRKVTYWYGGRSKRELFY+DH
Sbjct:  170 YIQIEIPECEIKYSDIDITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASYPAEGREIMLNVRIATPPWDRAKNGWMDVNPGVASSYIFSLKPGDDVVISGPYGEFFINESDAEMLYVGGGAGMAPMRSHLYHLFKTLKTNRKVTYWYGGRSKRELFYIDH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=30 Tax=root TaxID=1 RepID=E6X6L9_CELAD)

HSP 1 Score: 337 bits (863), Expect = 4.810e-113
Identity = 155/170 (91.18%), Postives = 165/170 (97.06%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIP+CEVK++++ ITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMAS+PAEGREIMLNVRIATPPWDR+KNGWMDVNPGVASSYIFNLK GDDV ISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLF+TL+T RKV+YWYGGRSKRELFYLDH
Sbjct:  170 YIQIEIPECEVKYADIDITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASYPAEGREIMLNVRIATPPWDRAKNGWMDVNPGVASSYIFNLKPGDDVVISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFRTLKTGRKVSYWYGGRSKRELFYLDH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=4 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A3G2L410_9FLAO)

HSP 1 Score: 336 bits (862), Expect = 6.820e-113
Identity = 154/170 (90.59%), Postives = 166/170 (97.65%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ E+PQCE+K++++ ITAHPEEHETPDKF+AEWDKFNLWPLVMKNPE VERAYSMAS+PAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIF+LKKGDDV ISGPYGEFFINES+SEMLYVGGGAGMAPMRSHLYHLFKTL+TNRKVTYWYGGRSKRELFYL+H
Sbjct:  170 YIQIEVPQCEIKYADIDITAHPEEHETPDKFKAEWDKFNLWPLVMKNPELVERAYSMASYPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFSLKKGDDVVISGPYGEFFINESESEMLYVGGGAGMAPMRSHLYHLFKTLQTNRKVTYWYGGRSKRELFYLEH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=18 Tax=Flavobacteriia TaxID=117743 RepID=A0A0N8H3D9_9FLAO)

HSP 1 Score: 335 bits (860), Expect = 1.410e-112
Identity = 155/170 (91.18%), Postives = 164/170 (96.47%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ E+P+CEVKF++M ITAHPEEH+TPDKF+AEWDKFNLWPLVMKNPE VERAYSMASFPAEGREIMLNVRIATPPWDR+KNGWMDVNPGVASSYIF LK GDDV ISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTL+T+RKVTYWYGGRSKRELFYLDH
Sbjct:  170 YIQIEVPKCEVKFADMDITAHPEEHDTPDKFKAEWDKFNLWPLVMKNPEMVERAYSMASFPAEGREIMLNVRIATPPWDRAKNGWMDVNPGVASSYIFGLKPGDDVVISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLKTDRKVTYWYGGRSKRELFYLDH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A223V711_9FLAO)

HSP 1 Score: 335 bits (859), Expect = 1.940e-112
Identity = 154/170 (90.59%), Postives = 165/170 (97.06%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIP+CEVK+S++ ITAHPEEHETPDKF+AEWDKFNLWPLVMKNPETVERAYSMAS+PAEGREIMLNVRIATPPWDRSKNGWMDVNPG+ASSYIFNLKKGD   ISGPYGEFFINESD+EMLYVGGGAGMAPMRSHLYHLFKTL+T+RKV+YWYGGRSKRELFYLDH
Sbjct:  170 YIQIEIPECEVKYSDIDITAHPEEHETPDKFKAEWDKFNLWPLVMKNPETVERAYSMASYPAEGREIMLNVRIATPPWDRSKNGWMDVNPGIASSYIFNLKKGDKCVISGPYGEFFINESDAEMLYVGGGAGMAPMRSHLYHLFKTLKTDRKVSYWYGGRSKRELFYLDH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=18 Tax=Flavobacteriaceae TaxID=49546 RepID=A4ATH2_MARSH)

HSP 1 Score: 335 bits (859), Expect = 1.940e-112
Identity = 157/170 (92.35%), Postives = 162/170 (95.29%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIP CE+K+S++ ITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIF  K GD V ISGPYGEFFINES+SEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH
Sbjct:  170 YIQIEIPPCEIKYSDIDITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFAQKPGDKVVISGPYGEFFINESESEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=26 Tax=Bacteroidetes TaxID=976 RepID=A0A0Q1H7R8_9FLAO)

HSP 1 Score: 333 bits (853), Expect = 1.570e-111
Identity = 153/170 (90.00%), Postives = 165/170 (97.06%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIP CEVK+S++ ITAHPEEHETPDKF+AEWDKFNLWPLVMKNPETVERAYSMAS+PAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIF LK+GD VTISGP+GEFFINES++EMLYVGGGAGMAPMRSHLYHLF+TL+TNRKVTYWYGGRSKRELFY+DH
Sbjct:  170 YIQIEIPPCEVKYSDIDITAHPEEHETPDKFKAEWDKFNLWPLVMKNPETVERAYSMASYPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFGLKEGDPVTISGPFGEFFINESEAEMLYVGGGAGMAPMRSHLYHLFRTLKTNRKVTYWYGGRSKRELFYIDH 339
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Match: Na(+)-translocating (NADH-quinone reductase subunit F n=6 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A1G6ZS73_9FLAO)

HSP 1 Score: 332 bits (851), Expect = 3.160e-111
Identity = 152/170 (89.41%), Postives = 164/170 (96.47%), Query Frame = 1 
Query:    1 YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPETVERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNLKKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTNRKVTYWYGGRSKRELFYLDH 510
            YIQ EIP+CE+ + ++ ITAHPEEHETPDKFQ EWDKFNLWPLVMKNPETVERAYSMASFPAEG+EIMLNVRIATPPWDRSKNGWM VNPGVASSYIF+LKKGDDVTISGP+GEFFINESDSEMLYVGGGAGMAPMRSHLYHLF+TL+TNRKV+YWYGGRSKRELFY+DH
Sbjct:  170 YIQIEIPKCEINYKDIDITAHPEEHETPDKFQEEWDKFNLWPLVMKNPETVERAYSMASFPAEGKEIMLNVRIATPPWDRSKNGWMTVNPGVASSYIFSLKKGDDVTISGPFGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFETLKTNRKVSYWYGGRSKRELFYIDH 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77435.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Na(+)-translocating6.350e-11694.12NADH-quinone reductase subunit F n=12 Tax=root Tax... [more]
Na(+)-translocating3.630e-11592.94NADH-quinone reductase subunit F n=3 Tax=Flavobact... [more]
Na(+)-translocating8.400e-11491.18NADH-quinone reductase subunit F n=18 Tax=Flavobac... [more]
Na(+)-translocating4.810e-11391.18NADH-quinone reductase subunit F n=30 Tax=root Tax... [more]
Na(+)-translocating6.820e-11390.59NADH-quinone reductase subunit F n=4 Tax=Flavobact... [more]
Na(+)-translocating1.410e-11291.18NADH-quinone reductase subunit F n=18 Tax=Flavobac... [more]
Na(+)-translocating1.940e-11290.59NADH-quinone reductase subunit F n=2 Tax=Flavobact... [more]
Na(+)-translocating1.940e-11292.35NADH-quinone reductase subunit F n=18 Tax=Flavobac... [more]
Na(+)-translocating1.570e-11190.00NADH-quinone reductase subunit F n=26 Tax=Bacteroi... [more]
Na(+)-translocating3.160e-11189.41NADH-quinone reductase subunit F n=6 Tax=Flavobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77435contigH-canaliculatus_M_contigs77435:2..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog616991.JPOO01000003_gene1296
Preferred namenqrF
PFAMsFAD_binding_6,Fer2,NAD_binding_1
Model size510
Max annot lvl976|Bacteroidetes
KEGG koko:K00351
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.18e-117
EggNOG OGsCOG2871@1|root,COG2871@2|Bacteria,4NFKC@976|Bacteroidetes,1HWV9@117743|Flavobacteriia,23H1R@178469|Arenibacter
EC1.6.5.8
DescriptionOxidoreductase FAD-binding domain
Cds size510
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.8267338-CDS-H-canaliculatus_M_contigs77435:1..5111696854111.8267338-CDS-H-canaliculatus_M_contigs77435:1..511Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77435 2..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77435.1.1prot_H-canaliculatus_M_contigs77435.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77435 2..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77435.1.1

>prot_H-canaliculatus_M_contigs77435.1.1 ID=prot_H-canaliculatus_M_contigs77435.1.1|Name=mRNA_H-canaliculatus_M_contigs77435.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp
YIQREIPQCEVKFSEMAITAHPEEHETPDKFQAEWDKFNLWPLVMKNPET
VERAYSMASFPAEGREIMLNVRIATPPWDRSKNGWMDVNPGVASSYIFNL
KKGDDVTISGPYGEFFINESDSEMLYVGGGAGMAPMRSHLYHLFKTLRTN
RKVTYWYGGRSKRELFYLDH
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mRNA from alignment at H-canaliculatus_M_contigs77435:2..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77435.1.1 ID=mRNA_H-canaliculatus_M_contigs77435.1.1|Name=mRNA_H-canaliculatus_M_contigs77435.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77435:2..511- (Hapterophycus canaliculatus Oshoro7m male)
TATATTCAAAGAGAAATTCCACAATGTGAAGTGAAGTTTTCAGAAATGGC
TATTACTGCACACCCAGAAGAGCATGAGACTCCAGATAAATTTCAAGCAG
AATGGGACAAGTTCAACTTATGGCCATTGGTCATGAAGAACCCTGAAACG
GTTGAGAGAGCATACTCTATGGCTTCTTTTCCTGCTGAAGGAAGAGAGAT
TATGTTGAATGTGCGTATCGCTACGCCACCATGGGATCGTTCCAAAAATG
GATGGATGGATGTTAACCCTGGTGTTGCTTCATCGTATATTTTCAACTTG
AAGAAAGGTGATGATGTAACTATTTCAGGACCTTATGGTGAATTCTTTAT
CAATGAGTCTGATTCAGAAATGTTATATGTAGGTGGTGGTGCAGGTATGG
CGCCAATGCGTTCGCATTTATATCATTTATTCAAAACCCTAAGAACTAAT
CGTAAAGTGACCTATTGGTATGGTGGACGTTCAAAACGTGAATTATTTTA
CTTAGATCAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77435:2..511-

>mRNA_H-canaliculatus_M_contigs77435.1.1 ID=mRNA_H-canaliculatus_M_contigs77435.1.1|Name=mRNA_H-canaliculatus_M_contigs77435.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77435:2..511- (Hapterophycus canaliculatus Oshoro7m male)
TATATTCAAAGAGAAATTCCACAATGTGAAGTGAAGTTTTCAGAAATGGC
TATTACTGCACACCCAGAAGAGCATGAGACTCCAGATAAATTTCAAGCAG
AATGGGACAAGTTCAACTTATGGCCATTGGTCATGAAGAACCCTGAAACG
GTTGAGAGAGCATACTCTATGGCTTCTTTTCCTGCTGAAGGAAGAGAGAT
TATGTTGAATGTGCGTATCGCTACGCCACCATGGGATCGTTCCAAAAATG
GATGGATGGATGTTAACCCTGGTGTTGCTTCATCGTATATTTTCAACTTG
AAGAAAGGTGATGATGTAACTATTTCAGGACCTTATGGTGAATTCTTTAT
CAATGAGTCTGATTCAGAAATGTTATATGTAGGTGGTGGTGCAGGTATGG
CGCCAATGCGTTCGCATTTATATCATTTATTCAAAACCCTAAGAACTAAT
CGTAAAGTGACCTATTGGTATGGTGGACGTTCAAAACGTGAATTATTTTA
CTTAGATCAT
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