mRNA_H-canaliculatus_M_contigs7739.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7739.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7739.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7739.1.1 vs.
Match: Rhodanese (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 508 bits (1308), Expect = 8.800e-164
Identity = 301/425 (70.82%), Postives = 321/425 (75.53%), Query Frame = 1 
Query:    1 KIPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQLVDLSGGLEVAVKEGGSKTSNSSGGXXXXXXXXXXGRGSGTDIAGGRGLGDDREMAAVPWAASPPLPPRVTEGAPRPGGXXXXXXXXXXXXXXXYAAVLGGAGSPRLPEELAASSWDHGGGGDEGFDGDEAAPAFA-DGWGMGATPXXXXXXXXREDMAPAEVLRVVARGVRAEFKTLQWACRQETFPYTRGTGTADATVVDGYVSLGFSIKRGIVDQEKGVEGPLLVLSTRTVTLDRLDLTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDGHASDLLGTINSYAEGSWPFLLSLTSLKLEDFPQASEKELAMARGEGRPEGVPQGGIMASIAGLGGSAAASSAAAVAEGHHRALEEAFVV--EGGRVTNLKGFVQEDFGVVFDEV 1266
            ++PPISGTSSRVGYAITNLDLSGFRLRKEDV+VQLVDLSGGLEVAVKEGGS  +                   G              MAAVPW A+      V E + RPG                YAAVLGGAGSPRLPEEL  S W H G G +GFD  + A AFA DG  + A+P        REDMAPAEVLRVVARGVRAEFKTLQWACRQETFPYT G GTADATVVDGYVSLGFSIKRGIVD+EKG+EGPLLVLSTRTVTLDRL LTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDGHAS LLGT+N+YAEGSWPFLLSLTSLKLEDFP A+EKELAMARGEGRP+G P GG+MASIAGL G A  ++A  V   +HRALEEAFVV  EG RV NLKGFVQEDFGVVFDEV
Sbjct:  751 EVPPISGTSSRVGYAITNLDLSGFRLRKEDVDVQLVDLSGGLEVAVKEGGSSNNG------------RDAISDGXXXXXXXXXXXXXXMAAVPWGAA------VKEASSRPGDGSFVSLPEQRRQAA-YAAVLGGAGSPRLPEELQVS-WGHHGEG-KGFD--DGAEAFAEDGGVVSASPPVPPP---REDMAPAEVLRVVARGVRAEFKTLQWACRQETFPYTYGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRLGLTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDGHASALLGTVNAYAEGSWPFLLSLTSLKLEDFPLATEKELAMARGEGRPQGNP-GGVMASIAGLAGGATGAAAVVV---NHRALEEAFVVQGEGRRVLNLKGFVQEDFGVVFDEV 1145
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BLAST of mRNA_H-canaliculatus_M_contigs7739.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.100e-36
Identity = 79/130 (60.77%), Postives = 102/130 (78.46%), Query Frame = 1 
Query:  568 DMAPA-EVLRVVARGVRAEFKTLQWACRQETFPYTRGTGTADATVVDGYVSLGFSIKRGIVDQEKGVEGPLLVLSTRTVTLDRLDLTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDGHASDLLGT 954
            D  PA EV  VVARGV+A+F+ +QWA +QETFPY  GTGTADA VV+G V +GFS+KRG +    GVEGPLLV+S+RT+T++ L ++VAN R+AWL+NLL  LFS TI  YVCRSL++ +D +AS+LL T
Sbjct:  890 DTPPAPEVFAVVARGVQAQFRGIQWAAKQETFPYGSGTGTADAMVVNGSVRIGFSLKRGTLG---GVEGPLLVMSSRTITMEALTVSVANTRLAWLLNLLVSLFSETIKEYVCRSLKDTLDKNASELLRT 1016
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BLAST of mRNA_H-canaliculatus_M_contigs7739.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HX46_POLGL)

HSP 1 Score: 68.9 bits (167), Expect = 9.590e-9
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:  583 EVLRVVARGVRAEFKTLQWACRQETFPYTRGTGTADATVVDGYVSLGFSIKRGIVDQEKGVEGPLLVLSTRTVTLDRLDLTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDGHASDLLGTINS 963
            E+LRV A  + A F+ L+    QE FP+      ADA      V   F +K G+  ++     P LV+S+R+V +D L+L V     A ++N L+ LF+  + +Y C+ + +Q+D     L+ ++NS
Sbjct:  900 ELLRVSAWDISAHFRKLKVTVNQEFFPFLTADCIADAKAERMSVGFAFKLKPGVNGKQ-----PELVMSSRSVHMDHLELWVGETNYAVVVNALSFLFADVLKSYACQKIADQLDEQMEVLVASLNS 1021
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7739.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Rhodanese8.800e-16470.82domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Uncharacterized3.100e-3660.77protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical9.590e-932.28protein (Fragment) n=2 Tax=Polarella glacialis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7739contigH-canaliculatus_M_contigs7739:996..3772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTI7
PFAMsPDZ
Model size1275
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.44e-164
EggNOG OGs28JPJ@1|root,2QS2W@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005770.1
Cds size1275
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.220169-CDS-H-canaliculatus_M_contigs7739:995..16461696854111.220169-CDS-H-canaliculatus_M_contigs7739:995..1646Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7739 996..1646 +
1696854111.2332385-CDS-H-canaliculatus_M_contigs7739:2012..21411696854111.2332385-CDS-H-canaliculatus_M_contigs7739:2012..2141Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7739 2013..2141 +
1696854111.2451186-CDS-H-canaliculatus_M_contigs7739:2635..28161696854111.2451186-CDS-H-canaliculatus_M_contigs7739:2635..2816Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7739 2636..2816 +
1696854111.2589157-CDS-H-canaliculatus_M_contigs7739:3458..37721696854111.2589157-CDS-H-canaliculatus_M_contigs7739:3458..3772Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7739 3459..3772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7739.1.1prot_H-canaliculatus_M_contigs7739.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7739 996..3772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7739.1.1

>prot_H-canaliculatus_M_contigs7739.1.1 ID=prot_H-canaliculatus_M_contigs7739.1.1|Name=mRNA_H-canaliculatus_M_contigs7739.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=425bp
KIPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQLVDLSGGLEVAVKEGG
SKTSNSSGGSGDTDQQGGGGRGSGTDIAGGRGLGDDREMAAVPWAASPPL
PPRVTEGAPRPGGGGSLASPPDQRRKAAYAAVLGGAGSPRLPEELAASSW
DHGGGGDEGFDGDEAAPAFADGWGMGATPPPVPPPPPREDMAPAEVLRVV
ARGVRAEFKTLQWACRQETFPYTRGTGTADATVVDGYVSLGFSIKRGIVD
QEKGVEGPLLVLSTRTVTLDRLDLTVANCRMAWLINLLTRLFSSTISTYV
CRSLQEQVDGHASDLLGTINSYAEGSWPFLLSLTSLKLEDFPQASEKELA
MARGEGRPEGVPQGGIMASIAGLGGSAAASSAAAVAEGHHRALEEAFVVE
GGRVTNLKGFVQEDFGVVFDEVWR*
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mRNA from alignment at H-canaliculatus_M_contigs7739:996..3772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7739.1.1 ID=mRNA_H-canaliculatus_M_contigs7739.1.1|Name=mRNA_H-canaliculatus_M_contigs7739.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2777bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7739:996..3772+ (Hapterophycus canaliculatus Oshoro7m male)
AAGATCCCCCCGATCTCCGGCACGAGCTCTCGGGTGGGCTACGCCATCAC
CAACCTCGACCTGTCGGGCTTCCGCCTCCGGAAGGAGGACGTGGAGGTTC
AGCTTGTCGACCTCTCCGGCGGCCTGGAGGTCGCCGTAAAGGAAGGCGGC
AGCAAGACCAGCAACAGCAGCGGCGGCAGCGGCGACACGGACCAGCAAGG
GGGAGGCGGCAGAGGCTCTGGAACGGACATTGCGGGTGGGCGTGGCTTGG
GGGATGATAGAGAAATGGCGGCGGTTCCCTGGGCGGCGTCGCCGCCGCTA
CCACCGCGCGTGACAGAGGGTGCGCCAAGGCCAGGCGGGGGTGGGTCGCT
CGCGTCCCCTCCCGACCAAAGGCGGAAGGCCGCCTACGCCGCCGTGCTGG
GGGGAGCGGGATCCCCGCGGCTGCCGGAAGAACTGGCGGCCTCTTCCTGG
GACCACGGCGGCGGAGGGGATGAAGGTTTCGACGGCGATGAAGCGGCGCC
GGCGTTTGCGGACGGGTGGGGGATGGGTGCGACGCCTCCGCCGGTGCCCC
CGCCGCCCCCACGGGAGGATATGGCTCCTGCCGAGGTGCTGCGGGTGGTC
GCGAGAGGCGTTAGGGCGGAGTTTAAGACGCTGCAGTGGGCGTGCCGTCA
GGTGAGTCGATCCGGGGATTGCTGCTGGCTGCTGACTGTTGGTTTGTTTG
AGGTTCGAGGCACGTGGTGTCTTGCGGGTGCGGGTTGACTCGAGCCGCCG
GTGTTTTGTCTTCTTCCTTGGTTGGTGTCAATGGATTGTGGTTCCGTCCT
ATCAGCAAGAACACGAGTTGCCTTTCGAAGTTGTTGGTACGATCTTTGCA
GGGTCAGTTTTAGTGTGGTTCGGGCCCGTTCGATGGTGATCGGTGTTCGG
GTGTGTCCGCGACAGCAGCAGCAGCGGCAGCAGCAGCAGCGGTATGTACA
ACAACAATCCGACTTGGACGTGACACGTGTCTGCGCGCCTGCTGCCGCTG
TGTTGCAACACCTCCAGGAAACGTTCCCCTACACCCGCGGCACCGGGACC
GCTGATGCGACTGTCGTGGACGGTTACGTCTCTCTGGGGTTTTCCATCAA
AAGAGGCATCGTGGACCAGGAGAAGGGAGTCGAGGGCCCCTTGCTGGTGA
GCGAGCGACGAAAGAGGGGGGGGAGGGGAAGTGCGCGGGAGTTGCCTTTG
AGAGTTTTTCACTCCTGAAGGCGATTATTTGTCAAAGGAATTACGTCAAG
TGCCTGTTCTAGTCTCCTACCTTGCCTGCTCCGGTCTGTTTGCTTTCTCG
ATATCGTGTCCCTGTTACAGTGCAAAGCTGGTTTTTCAGGTACGGGATTC
GGACAACAATAAACGGAAGATCTTAGCGTTCTAGTTTCCAGTTCGCCCGC
GGAACGTTTTGGTATACAGGTATACATGTCTGTGGGTGTGGGTGTTGGTG
TGGGTGTGGGTGTGAGGAGGGTGAGATAGTGCTTCATTTCCGTCTTGTAG
AGGAACCGCGTCCTCCTCTGCTCCCTACAGAGCATCATCGTCGCGGTGCA
ACCTGCACCCATAACTCAAGCAAGAACAAGAGCAACGACAATAACAGCAA
CAACAATAACTGCGAATTTGTGCCTTTCTCTTTTCTTCAGGTCCTCTCGA
CCCGCACGGTGACCCTGGACCGGCTGGATCTCACCGTTGCCAATTGCCGC
ATGGCGTGGCTCATCAACCTCTTGACACGGCTGTTTTCGAGCACAATCAG
CACCTACGTGTGCCGGTCGCTGCAGGAACAGGTGGACGGACACGCTTCGG
ATCTGTTGGGCACGATCAATTGTGAGCTCTCCGACTGCTCGTCCAAGTGG
GTAGGAGCGGTTTTTTGGAAGAAAAACAGTCGACCACACGGAAGAAATAC
TTGTACAACTTTTTTGAAACTGCTGTAGGATGGACACGCCGTCTCGCCGA
GACACGTCGCAGCAGGCGGATCGGCATTGCAGCGGGCGTCTCCGGAAGCC
TGTGCTGCATTTCATACAGTGAGGGTTCAAGTGTAGAGGAGCTAAACGCA
TCAACGAAAGCAAAAGTCTTGGAGACTCGGCAGGGGGAAATGGGTGCGGA
TTGTGGTGAAATCGACGTGGAAGTCACAATTTCGTGCAACAGTCGTCGTT
GTTGTCGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGGTAGCGGTGA
GCAGTGGTGGGTGGCAGCCTTGATGCTGTCTTCGCTGTCGTTCGCGTCCA
CAAAATCGCAGAAAGCGAGAGCAACATGTCCTGGGCTAAGCACGAGCGAT
ACCAGACGCAAACTTCATCGGCGCGCGGATCTGAAAGGTGTAAGGTTGTG
GACGCACTTGAGGAACCTACCGTTCGCCCGATCCTCTGTGTCACTCTTGC
CGTCGGCCAACAAAGCGTTTATCTTCCTCCCTCGCCTCTCTTCTTGTCGG
CTCTGGCACCAAGCCTACGCGGAGGGATCCTGGCCTTTCCTGCTTAGCCT
CACCAGCCTCAAGCTGGAAGATTTCCCACAGGCAAGCGAGAAGGAGCTGG
CCATGGCACGAGGGGAGGGCCGACCAGAGGGAGTTCCCCAAGGAGGCATC
ATGGCCAGCATTGCTGGGCTCGGGGGAAGCGCGGCAGCGAGCAGCGCGGC
GGCGGTGGCCGAAGGACACCACCGCGCACTCGAGGAGGCGTTCGTTGTGG
AGGGGGGCCGCGTGACTAACCTCAAGGGCTTCGTCCAGGAAGACTTCGGC
GTGGTGTTTGATGAGGTGTGGCGTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7739:996..3772+

>mRNA_H-canaliculatus_M_contigs7739.1.1 ID=mRNA_H-canaliculatus_M_contigs7739.1.1|Name=mRNA_H-canaliculatus_M_contigs7739.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1275bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7739:996..3772+ (Hapterophycus canaliculatus Oshoro7m male)
AAGATCCCCCCGATCTCCGGCACGAGCTCTCGGGTGGGCTACGCCATCAC
CAACCTCGACCTGTCGGGCTTCCGCCTCCGGAAGGAGGACGTGGAGGTTC
AGCTTGTCGACCTCTCCGGCGGCCTGGAGGTCGCCGTAAAGGAAGGCGGC
AGCAAGACCAGCAACAGCAGCGGCGGCAGCGGCGACACGGACCAGCAAGG
GGGAGGCGGCAGAGGCTCTGGAACGGACATTGCGGGTGGGCGTGGCTTGG
GGGATGATAGAGAAATGGCGGCGGTTCCCTGGGCGGCGTCGCCGCCGCTA
CCACCGCGCGTGACAGAGGGTGCGCCAAGGCCAGGCGGGGGTGGGTCGCT
CGCGTCCCCTCCCGACCAAAGGCGGAAGGCCGCCTACGCCGCCGTGCTGG
GGGGAGCGGGATCCCCGCGGCTGCCGGAAGAACTGGCGGCCTCTTCCTGG
GACCACGGCGGCGGAGGGGATGAAGGTTTCGACGGCGATGAAGCGGCGCC
GGCGTTTGCGGACGGGTGGGGGATGGGTGCGACGCCTCCGCCGGTGCCCC
CGCCGCCCCCACGGGAGGATATGGCTCCTGCCGAGGTGCTGCGGGTGGTC
GCGAGAGGCGTTAGGGCGGAGTTTAAGACGCTGCAGTGGGCGTGCCGTCA
GGAAACGTTCCCCTACACCCGCGGCACCGGGACCGCTGATGCGACTGTCG
TGGACGGTTACGTCTCTCTGGGGTTTTCCATCAAAAGAGGCATCGTGGAC
CAGGAGAAGGGAGTCGAGGGCCCCTTGCTGGTCCTCTCGACCCGCACGGT
GACCCTGGACCGGCTGGATCTCACCGTTGCCAATTGCCGCATGGCGTGGC
TCATCAACCTCTTGACACGGCTGTTTTCGAGCACAATCAGCACCTACGTG
TGCCGGTCGCTGCAGGAACAGGTGGACGGACACGCTTCGGATCTGTTGGG
CACGATCAATTCCTACGCGGAGGGATCCTGGCCTTTCCTGCTTAGCCTCA
CCAGCCTCAAGCTGGAAGATTTCCCACAGGCAAGCGAGAAGGAGCTGGCC
ATGGCACGAGGGGAGGGCCGACCAGAGGGAGTTCCCCAAGGAGGCATCAT
GGCCAGCATTGCTGGGCTCGGGGGAAGCGCGGCAGCGAGCAGCGCGGCGG
CGGTGGCCGAAGGACACCACCGCGCACTCGAGGAGGCGTTCGTTGTGGAG
GGGGGCCGCGTGACTAACCTCAAGGGCTTCGTCCAGGAAGACTTCGGCGT
GGTGTTTGATGAGGTGTGGCGTTAG
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